jgi.p|Nanoce1779_2|596330, mRNA_6792 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596330
Unique NamemRNA_6792
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length911
Alignment locationscaffold_17:110913..111823 -

Link to JBrowse

Properties
Property NameValue
TranscriptId596416
TrackFilteredModels2
ProteinId596330
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:110913..111823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596330gene_6792Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596330mRNA_6792-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6792CDS_6792Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6792 ID=mRNA_6792|Name=jgi.p|Nanoce1779_2|596330|organism=Nannochloropsis oceanica|type=mRNA|length=911bp
AGACGGAATCAATCAAATTCAAAGCGAAAGACCAGGTCATGCGATCGTAT
GAGGCCGTGTCACCTGCCGTCCAGTCGTATGGCTTTGGGTGCTGCCCGAG
GCCATGCCTCGGTGGGGGTAATGAAGACACTCCAGGTCCGGGCACATACC
GCCTCAAATCCACACTTATCGGACACGTAGCCGACTCAAGGATCCGCTCC
AACACTGGCTTTTCATTACGGAGTCGCACCACCTTTGGAAGCGACAGCAC
TTCGTCCATGCAGTCCGCGGCCGCTACGCCCGGCCCGGGCGATTACGTTT
GCATTCAACAACACGTCGGGTTCTTGATGGTTAATCCCAAGGAGAGGAAT
GCGCCACGATTTTCTTTCCCCAAGGGCCATTTTCCACGTGGCAATACCAA
GTTGGAGCCTGGACCCGGGCAATACCAGCTCAAGGAAGCCATGGGCCCGC
AAGCCTTGTCCACCAAGATCAATCCCCCCTCCACCATGTTCGCCAGGAGC
CGCAGCCTTCCCAGCAGCAACAGCAGCAGCAGTATCTGTAGCACCCGCAG
TGACTGCAGACGTCATCATACCGACGTTGGCCCTGGGTCTTACAATTACG
ATAGTGCCTGTGGCAAGCAGGTTGATTCGCGGAAGCAAAACTGTAGTGGG
ACACGTTTTGGGACTGCCGATGGCCCCTCGCCGCCCAAATTACCCACTTT
ATCCAGGACGACAAAAAGAGGAAGAAGAGCACGGTCATGAAACCTTGACC
GGAAATGGCGTATTATGAGGGAGTAAGAGACCAAGCAAGTGGACGTGTGC
TTGGAAGGAAACAAGGAACCGGAGGAAGCCAGATGCGTGTCATTTTCACC
ATACAGAACCGAAAACAAGATCTCATCTGAATTGATTCCAATGTACAAGC
TGACTATGTTT
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protein sequence of jgi.p|Nanoce1779_2|596330

>mRNA_6792-protein ID=mRNA_6792-protein|Name=jgi.p|Nanoce1779_2|596330|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MRSYEAVSPAVQSYGFGCCPRPCLGGGNEDTPGPGTYRLKSTLIGHVADS
RIRSNTGFSLRSRTTFGSDSTSSMQSAAATPGPGDYVCIQQHVGFLMVNP
KERNAPRFSFPKGHFPRGNTKLEPGPGQYQLKEAMGPQALSTKINPPSTM
FARSRSLPSSNSSSSICSTRSDCRRHHTDVGPGSYNYDSACGKQVDSRKQ
NCSGTRFGTADGPSPPKLPTLSRTTKRGRRARS*
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mRNA from alignment at scaffold_17:110913..111823-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6792 ID=mRNA_6792|Name=jgi.p|Nanoce1779_2|596330|organism=Nannochloropsis oceanica|type=mRNA|length=911bp|location=Sequence derived from alignment at scaffold_17:110913..111823- (Nannochloropsis oceanica)
AGACGGAATCAATCAAATTCAAAGCGAAAGACCAGGTCATGCGATCGTAT
GAGGCCGTGTCACCTGCCGTCCAGTCGTATGGCTTTGGGTGCTGCCCGAG
GCCATGCCTCGGTGGGGGTAATGAAGACACTCCAGGTCCGGGCACATACC
GCCTCAAATCCACACTTATCGGACACGTAGCCGACTCAAGGATCCGCTCC
AACACTGGCTTTTCATTACGGAGTCGCACCACCTTTGGAAGCGACAGCAC
TTCGTCCATGCAGTCCGCGGCCGCTACGCCCGGCCCGGGCGATTACGTTT
GCATTCAACAACACGTCGGGTTCTTGATGGTTAATCCCAAGGAGAGGAAT
GCGCCACGATTTTCTTTCCCCAAGGGCCATTTTCCACGTGGCAATACCAA
GTTGGAGCCTGGACCCGGGCAATACCAGCTCAAGGAAGCCATGGGCCCGC
AAGCCTTGTCCACCAAGATCAATCCCCCCTCCACCATGTTCGCCAGGAGC
CGCAGCCTTCCCAGCAGCAACAGCAGCAGCAGTATCTGTAGCACCCGCAG
TGACTGCAGACGTCATCATACCGACGTTGGCCCTGGGTCTTACAATTACG
ATAGTGCCTGTGGCAAGCAGGTTGATTCGCGGAAGCAAAACTGTAGTGGG
ACACGTTTTGGGACTGCCGATGGCCCCTCGCCGCCCAAATTACCCACTTT
ATCCAGGACGACAAAAAGAGGAAGAAGAGCACGGTCATGAAACCTTGACC
GGAAATGGCGTATTATGAGGGAGTAAGAGACCAAGCAAGTGGACGTGTGC
TTGGAAGGAAACAAGGAACCGGAGGAAGCCAGATGCGTGTCATTTTCACC
ATACAGAACCGAAAACAAGATCTCATCTGAATTGATTCCAATGTACAAGC
TGACTATGTTT
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Coding sequence (CDS) from alignment at scaffold_17:110913..111823-

>mRNA_6792 ID=mRNA_6792|Name=jgi.p|Nanoce1779_2|596330|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_17:110913..111823- (Nannochloropsis oceanica)
ATGCGATCGTATGAGGCCGTGTCACCTGCCGTCCAGTCGTATGGCTTTGG
GTGCTGCCCGAGGCCATGCCTCGGTGGGGGTAATGAAGACACTCCAGGTC
CGGGCACATACCGCCTCAAATCCACACTTATCGGACACGTAGCCGACTCA
AGGATCCGCTCCAACACTGGCTTTTCATTACGGAGTCGCACCACCTTTGG
AAGCGACAGCACTTCGTCCATGCAGTCCGCGGCCGCTACGCCCGGCCCGG
GCGATTACGTTTGCATTCAACAACACGTCGGGTTCTTGATGGTTAATCCC
AAGGAGAGGAATGCGCCACGATTTTCTTTCCCCAAGGGCCATTTTCCACG
TGGCAATACCAAGTTGGAGCCTGGACCCGGGCAATACCAGCTCAAGGAAG
CCATGGGCCCGCAAGCCTTGTCCACCAAGATCAATCCCCCCTCCACCATG
TTCGCCAGGAGCCGCAGCCTTCCCAGCAGCAACAGCAGCAGCAGTATCTG
TAGCACCCGCAGTGACTGCAGACGTCATCATACCGACGTTGGCCCTGGGT
CTTACAATTACGATAGTGCCTGTGGCAAGCAGGTTGATTCGCGGAAGCAA
AACTGTAGTGGGACACGTTTTGGGACTGCCGATGGCCCCTCGCCGCCCAA
ATTACCCACTTTATCCAGGACGACAAAAAGAGGAAGAAGAGCACGGTCAT
GA
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Synonyms
Publications