jgi.p|Nanoce1779_2|596329, mRNA_6791 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596329
Unique NamemRNA_6791
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length912
Alignment locationscaffold_17:110026..110937 +

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Properties
Property NameValue
TranscriptId596415
TrackFilteredModels2
ProteinId596329
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:110026..110937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596329gene_6791Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596329mRNA_6791-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6791CDS_6791Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6791 ID=mRNA_6791|Name=jgi.p|Nanoce1779_2|596329|organism=Nannochloropsis oceanica|type=mRNA|length=912bp
AGAAAAAACAGGCAGCCTCATGAGATGGACTCGCCAGCTTGCCACCGCGG
CCTTTGCCGCGCACCATCTGCAGCATCCGTCGTATTCCATCTTTCACAAG
AAGCTGGGTCCTCGTCTGTCGGCTGCCTACGACCTGGTGCCGCATACTGC
TAGAGGAGTTGTCGATGTAGGCTGTGATCATGCGTTGCTATGCATTGCCT
TGGCCGCGGGTCGTCAACATCCCCATTTGCGCAGCGTCATTGGAGTTGAT
AAGGCAGCAGAACCTCTCAATGTGGCCAACCAAAATCTGCGAGAGCATTT
GTATTTGCGCAGCGAGACATACCCACTCACTGCCCATCTTGACCTACGCT
TAGGTGAAGGCCTTGAAGCCTTGTGCGCCGAGGACGACGGGCAGATCGAT
ACCTTGTGCATGGCCGGTATTGGCAGCGGCACAATTGTGAGTGTATTGAC
TTCGCTGAGCAAGTACGCGACGTTGAAGTACCTTGTGTTGCAGCCCTTTG
ACTCACGGCCGCAGTTTTTAAAAGAAGTGCGGGACTGTGTCCGGATGCAA
GACTTTCTTATTCGAGAGGAACGGATTGACTTTGTGAATGGCCGGTGGTT
TGTGACTATAGCGGCGGATAAAAATGCTGGAGAAGACGATTCAAGACAAA
GAAAGCAATCCGCGATTTTGGGAGAGACTTTGCGGCGGCGTGGACAAGAA
GATCCTCAAACACTTCAAGTTTACGGCGACTACCTTGCTCACCACCTTGC
TTGGTTTACAGCCATCAGCCGGGCACAAGGTGGCCATGTCGACATTACTT
TGTCTGGCAATCATGTAGCCACGTTTCTGGTGGCCATTGAGCAAGAAATG
GCGGCATTGGGAGTTTAATCAAATTTAAGGTCAAAATAAACATAGTCAGC
TTGTACATTGGA
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protein sequence of jgi.p|Nanoce1779_2|596329

>mRNA_6791-protein ID=mRNA_6791-protein|Name=jgi.p|Nanoce1779_2|596329|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MRWTRQLATAAFAAHHLQHPSYSIFHKKLGPRLSAAYDLVPHTARGVVDV
GCDHALLCIALAAGRQHPHLRSVIGVDKAAEPLNVANQNLREHLYLRSET
YPLTAHLDLRLGEGLEALCAEDDGQIDTLCMAGIGSGTIVSVLTSLSKYA
TLKYLVLQPFDSRPQFLKEVRDCVRMQDFLIREERIDFVNGRWFVTIAAD
KNAGEDDSRQRKQSAILGETLRRRGQEDPQTLQVYGDYLAHHLAWFTAIS
RAQGGHVDITLSGNHVATFLVAIEQEMAALGV*
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mRNA from alignment at scaffold_17:110026..110937+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6791 ID=mRNA_6791|Name=jgi.p|Nanoce1779_2|596329|organism=Nannochloropsis oceanica|type=mRNA|length=912bp|location=Sequence derived from alignment at scaffold_17:110026..110937+ (Nannochloropsis oceanica)
AGAAAAAACAGGCAGCCTCATGAGATGGACTCGCCAGCTTGCCACCGCGG
CCTTTGCCGCGCACCATCTGCAGCATCCGTCGTATTCCATCTTTCACAAG
AAGCTGGGTCCTCGTCTGTCGGCTGCCTACGACCTGGTGCCGCATACTGC
TAGAGGAGTTGTCGATGTAGGCTGTGATCATGCGTTGCTATGCATTGCCT
TGGCCGCGGGTCGTCAACATCCCCATTTGCGCAGCGTCATTGGAGTTGAT
AAGGCAGCAGAACCTCTCAATGTGGCCAACCAAAATCTGCGAGAGCATTT
GTATTTGCGCAGCGAGACATACCCACTCACTGCCCATCTTGACCTACGCT
TAGGTGAAGGCCTTGAAGCCTTGTGCGCCGAGGACGACGGGCAGATCGAT
ACCTTGTGCATGGCCGGTATTGGCAGCGGCACAATTGTGAGTGTATTGAC
TTCGCTGAGCAAGTACGCGACGTTGAAGTACCTTGTGTTGCAGCCCTTTG
ACTCACGGCCGCAGTTTTTAAAAGAAGTGCGGGACTGTGTCCGGATGCAA
GACTTTCTTATTCGAGAGGAACGGATTGACTTTGTGAATGGCCGGTGGTT
TGTGACTATAGCGGCGGATAAAAATGCTGGAGAAGACGATTCAAGACAAA
GAAAGCAATCCGCGATTTTGGGAGAGACTTTGCGGCGGCGTGGACAAGAA
GATCCTCAAACACTTCAAGTTTACGGCGACTACCTTGCTCACCACCTTGC
TTGGTTTACAGCCATCAGCCGGGCACAAGGTGGCCATGTCGACATTACTT
TGTCTGGCAATCATGTAGCCACGTTTCTGGTGGCCATTGAGCAAGAAATG
GCGGCATTGGGAGTTTAATCAAATTTAAGGTCAAAATAAACATAGTCAGC
TTGTACATTGGA
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Coding sequence (CDS) from alignment at scaffold_17:110026..110937+

>mRNA_6791 ID=mRNA_6791|Name=jgi.p|Nanoce1779_2|596329|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at scaffold_17:110026..110937+ (Nannochloropsis oceanica)
ATGAGATGGACTCGCCAGCTTGCCACCGCGGCCTTTGCCGCGCACCATCT
GCAGCATCCGTCGTATTCCATCTTTCACAAGAAGCTGGGTCCTCGTCTGT
CGGCTGCCTACGACCTGGTGCCGCATACTGCTAGAGGAGTTGTCGATGTA
GGCTGTGATCATGCGTTGCTATGCATTGCCTTGGCCGCGGGTCGTCAACA
TCCCCATTTGCGCAGCGTCATTGGAGTTGATAAGGCAGCAGAACCTCTCA
ATGTGGCCAACCAAAATCTGCGAGAGCATTTGTATTTGCGCAGCGAGACA
TACCCACTCACTGCCCATCTTGACCTACGCTTAGGTGAAGGCCTTGAAGC
CTTGTGCGCCGAGGACGACGGGCAGATCGATACCTTGTGCATGGCCGGTA
TTGGCAGCGGCACAATTGTGAGTGTATTGACTTCGCTGAGCAAGTACGCG
ACGTTGAAGTACCTTGTGTTGCAGCCCTTTGACTCACGGCCGCAGTTTTT
AAAAGAAGTGCGGGACTGTGTCCGGATGCAAGACTTTCTTATTCGAGAGG
AACGGATTGACTTTGTGAATGGCCGGTGGTTTGTGACTATAGCGGCGGAT
AAAAATGCTGGAGAAGACGATTCAAGACAAAGAAAGCAATCCGCGATTTT
GGGAGAGACTTTGCGGCGGCGTGGACAAGAAGATCCTCAAACACTTCAAG
TTTACGGCGACTACCTTGCTCACCACCTTGCTTGGTTTACAGCCATCAGC
CGGGCACAAGGTGGCCATGTCGACATTACTTTGTCTGGCAATCATGTAGC
CACGTTTCTGGTGGCCATTGAGCAAGAAATGGCGGCATTGGGAGTTTAA
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Synonyms
Publications