jgi.p|Nanoce1779_2|573767, mRNA_679 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573767
Unique NamemRNA_679
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length737
Alignment locationscaffold_2:172967..173703 -

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Properties
Property NameValue
TranscriptId573853
TrackFilteredModels2
ProteinId573767
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:172967..173703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573767gene_679Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573767mRNA_679-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_679CDS_679Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_679 ID=mRNA_679|Name=jgi.p|Nanoce1779_2|573767|organism=Nannochloropsis oceanica|type=mRNA|length=737bp
ACAGCCCACAGTAACATGGCAAATCGCAGCGGCAAGAAAACCGTGGGGAC
AGCAACGGCAAATGAATTGGCAGCATCTGGATGCGAGGTTTGCTGTGCGG
AAGGAAGCCAAGGCAAATACAAGTGCCCCACGTGCCATCTCCGGTATTGC
AGCGTGGCTTGCTGTCGAACGCACAAGGAGACTCCGTGCGAGAAAAAAGA
CCCAAGAAGAGCAGCAATTGCAGGAGCCGGCAAGAAGCGGGGCCGTGGTG
CGGCAGCAGACGGTTTCTTCCCCGTTCCTTCCTCCATTGCCCGGCGACAC
CATCGTGACGTTGCCCAGGCTGCTCAAGGACAGAAGGAGGAAGAGGAGAA
TTGGCCGGTGCTGACCGACGACATGCGTAAGGCCCTGTCGGAAAGCAAGT
GGCTACGAAGCGCCTTAGAAGATTCAACGCTTTGTAGTTTGTTGACGGAC
ATAGATGGGAACCCGCACCGGGTAGACAAGTTGAGGGAGGCCTTGGGTCA
TTACCCCGACTTAAAGGGGTTTGTGGATCGGTTGTTGTTGGAGGTGGGAG
CTCTCAAATATGAGAACGGGCAGTTGATATTTGCGGGGGATGGGGGTCCG
TGACATGAAGGAATAAGAGATGTAGATATGGAGAGGAGAGGGGGCATATT
GTTGAGGAATGTACTATTTTAAAGCGAGTGCAACAAGGCGGGTTTTCCGG
TATAAGAAAAGCAAAGGCTGTGAGCCAGACATTAATA
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protein sequence of jgi.p|Nanoce1779_2|573767

>mRNA_679-protein ID=mRNA_679-protein|Name=jgi.p|Nanoce1779_2|573767|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MANRSGKKTVGTATANELAASGCEVCCAEGSQGKYKCPTCHLRYCSVACC
RTHKETPCEKKDPRRAAIAGAGKKRGRGAAADGFFPVPSSIARRHHRDVA
QAAQGQKEEEENWPVLTDDMRKALSESKWLRSALEDSTLCSLLTDIDGNP
HRVDKLREALGHYPDLKGFVDRLLLEVGALKYENGQLIFAGDGGP*
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mRNA from alignment at scaffold_2:172967..173703-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_679 ID=mRNA_679|Name=jgi.p|Nanoce1779_2|573767|organism=Nannochloropsis oceanica|type=mRNA|length=737bp|location=Sequence derived from alignment at scaffold_2:172967..173703- (Nannochloropsis oceanica)
ACAGCCCACAGTAACATGGCAAATCGCAGCGGCAAGAAAACCGTGGGGAC
AGCAACGGCAAATGAATTGGCAGCATCTGGATGCGAGGTTTGCTGTGCGG
AAGGAAGCCAAGGCAAATACAAGTGCCCCACGTGCCATCTCCGGTATTGC
AGCGTGGCTTGCTGTCGAACGCACAAGGAGACTCCGTGCGAGAAAAAAGA
CCCAAGAAGAGCAGCAATTGCAGGAGCCGGCAAGAAGCGGGGCCGTGGTG
CGGCAGCAGACGGTTTCTTCCCCGTTCCTTCCTCCATTGCCCGGCGACAC
CATCGTGACGTTGCCCAGGCTGCTCAAGGACAGAAGGAGGAAGAGGAGAA
TTGGCCGGTGCTGACCGACGACATGCGTAAGGCCCTGTCGGAAAGCAAGT
GGCTACGAAGCGCCTTAGAAGATTCAACGCTTTGTAGTTTGTTGACGGAC
ATAGATGGGAACCCGCACCGGGTAGACAAGTTGAGGGAGGCCTTGGGTCA
TTACCCCGACTTAAAGGGGTTTGTGGATCGGTTGTTGTTGGAGGTGGGAG
CTCTCAAATATGAGAACGGGCAGTTGATATTTGCGGGGGATGGGGGTCCG
TGACATGAAGGAATAAGAGATGTAGATATGGAGAGGAGAGGGGGCATATT
GTTGAGGAATGTACTATTTTAAAGCGAGTGCAACAAGGCGGGTTTTCCGG
TATAAGAAAAGCAAAGGCTGTGAGCCAGACATTAATA
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Coding sequence (CDS) from alignment at scaffold_2:172967..173703-

>mRNA_679 ID=mRNA_679|Name=jgi.p|Nanoce1779_2|573767|organism=Nannochloropsis oceanica|type=CDS|length=588bp|location=Sequence derived from alignment at scaffold_2:172967..173703- (Nannochloropsis oceanica)
ATGGCAAATCGCAGCGGCAAGAAAACCGTGGGGACAGCAACGGCAAATGA
ATTGGCAGCATCTGGATGCGAGGTTTGCTGTGCGGAAGGAAGCCAAGGCA
AATACAAGTGCCCCACGTGCCATCTCCGGTATTGCAGCGTGGCTTGCTGT
CGAACGCACAAGGAGACTCCGTGCGAGAAAAAAGACCCAAGAAGAGCAGC
AATTGCAGGAGCCGGCAAGAAGCGGGGCCGTGGTGCGGCAGCAGACGGTT
TCTTCCCCGTTCCTTCCTCCATTGCCCGGCGACACCATCGTGACGTTGCC
CAGGCTGCTCAAGGACAGAAGGAGGAAGAGGAGAATTGGCCGGTGCTGAC
CGACGACATGCGTAAGGCCCTGTCGGAAAGCAAGTGGCTACGAAGCGCCT
TAGAAGATTCAACGCTTTGTAGTTTGTTGACGGACATAGATGGGAACCCG
CACCGGGTAGACAAGTTGAGGGAGGCCTTGGGTCATTACCCCGACTTAAA
GGGGTTTGTGGATCGGTTGTTGTTGGAGGTGGGAGCTCTCAAATATGAGA
ACGGGCAGTTGATATTTGCGGGGGATGGGGGTCCGTGA
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Synonyms
Publications