jgi.p|Nanoce1779_2|623660, mRNA_6789 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|623660
Unique NamemRNA_6789
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1050
Alignment locationscaffold_17:103896..104945 +

Link to JBrowse

Properties
Property NameValue
TranscriptId623746
TrackFilteredModels2
ProteinId623660
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:103896..104945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|623660gene_6789Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|623660mRNA_6789-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6789CDS_6789Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6789 ID=mRNA_6789|Name=jgi.p|Nanoce1779_2|623660|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp
ATGGCGGGTAACGAAAAACTGCAGCCGGAGACCTTGGAGGTGGTACGTTG
CAGGGACGCCAACATGCAAGAACCCTCCAAGGCCATGGTTCAAGCGGTAC
AATTTCATCCCTCGACGGGCGGATTGTTGTTTACGGCGGGCTTGGACAAG
ACACTGCGATTTTTTCAGGTGGATGGGAAGAGGAACGAAAAGGTGGCTGG
GGTGTTTTTCCCTGACCTGCCCATCCTGTCGGCTTCTTTCGTGGATCCGT
CGAGGGCTGGTGAATTTGAACAGGTGGTGGTGAGTGGGAGAAGGCCTTTT
TTTTATTGGTATGACACCGTTTCGGGAACGGCTGTGAGGGTTCATCGATT
GATAGGACGAGAAGAAAAGAGCTTGGAGAGGTTCGTGGCTTCTCCGGATG
GGCAGTGGCTGGCATTCACGGGTAAGGACGGGTATATCATATTGGTGGGC
GCAAAGAGCAAGCAGTGGGCTGGGGAGTTCAAGATGAATGGGACGGCGCG
ATCTATGTCGTTCAGTGCGGATGGCCAGCATCTGCTCGCCTCGGGGGGCG
ACGCCGTTGTGTACCGATGGGATTTGCGCTCGACCCGATGCCTCGCTCGG
TTCCACAACGAGGGAGGAACGGTTACTTCAGCCTTGGCTGCTTCGTTGGC
GGGTATGACAGCCGTGGGGGCCGAAAGTGGAGTGGTGAATCTATACGAGG
ACTCCGACGTGTTGGGAAGGGTGGAGAGGGAGGGAGGGCTGGCATTGGCG
CGACATGCCTCAACTGCCTTGCCACCCACCAAGGCGCTGACCCACTTGAC
GACCACGGTAGACTCGCTGGCTTTCAATCATGACGGGCAGCTGTTGGCGA
TGGCGTCGAAGTGGGATCGGGACGCCCTGCGGGTGGTGCACGTGCCCTCT
CGCACGGTGTATGCGAACTGGCCGACGGGGCAGACGCCTGTAAGGTATCC
GTCTGCACTGGCTTTCAGTCCGAATAGTGGGATGCTCGCAGTGGGGAATG
ATAGGGGGCGGGTGTTACTGTATCGGTTGAAACATTACGATAGAGCGTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|623660

>mRNA_6789-protein ID=mRNA_6789-protein|Name=jgi.p|Nanoce1779_2|623660|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MAGNEKLQPETLEVVRCRDANMQEPSKAMVQAVQFHPSTGGLLFTAGLDK
TLRFFQVDGKRNEKVAGVFFPDLPILSASFVDPSRAGEFEQVVVSGRRPF
FYWYDTVSGTAVRVHRLIGREEKSLERFVASPDGQWLAFTGKDGYIILVG
AKSKQWAGEFKMNGTARSMSFSADGQHLLASGGDAVVYRWDLRSTRCLAR
FHNEGGTVTSALAASLAGMTAVGAESGVVNLYEDSDVLGRVEREGGLALA
RHASTALPPTKALTHLTTTVDSLAFNHDGQLLAMASKWDRDALRVVHVPS
RTVYANWPTGQTPVRYPSALAFSPNSGMLAVGNDRGRVLLYRLKHYDRA*
back to top

mRNA from alignment at scaffold_17:103896..104945+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6789 ID=mRNA_6789|Name=jgi.p|Nanoce1779_2|623660|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp|location=Sequence derived from alignment at scaffold_17:103896..104945+ (Nannochloropsis oceanica)
ATGGCGGGTAACGAAAAACTGCAGCCGGAGACCTTGGAGGTGGTACGTTG
CAGGGACGCCAACATGCAAGAACCCTCCAAGGCCATGGTTCAAGCGGTAC
AATTTCATCCCTCGACGGGCGGATTGTTGTTTACGGCGGGCTTGGACAAG
ACACTGCGATTTTTTCAGGTGGATGGGAAGAGGAACGAAAAGGTGGCTGG
GGTGTTTTTCCCTGACCTGCCCATCCTGTCGGCTTCTTTCGTGGATCCGT
CGAGGGCTGGTGAATTTGAACAGGTGGTGGTGAGTGGGAGAAGGCCTTTT
TTTTATTGGTATGACACCGTTTCGGGAACGGCTGTGAGGGTTCATCGATT
GATAGGACGAGAAGAAAAGAGCTTGGAGAGGTTCGTGGCTTCTCCGGATG
GGCAGTGGCTGGCATTCACGGGTAAGGACGGGTATATCATATTGGTGGGC
GCAAAGAGCAAGCAGTGGGCTGGGGAGTTCAAGATGAATGGGACGGCGCG
ATCTATGTCGTTCAGTGCGGATGGCCAGCATCTGCTCGCCTCGGGGGGCG
ACGCCGTTGTGTACCGATGGGATTTGCGCTCGACCCGATGCCTCGCTCGG
TTCCACAACGAGGGAGGAACGGTTACTTCAGCCTTGGCTGCTTCGTTGGC
GGGTATGACAGCCGTGGGGGCCGAAAGTGGAGTGGTGAATCTATACGAGG
ACTCCGACGTGTTGGGAAGGGTGGAGAGGGAGGGAGGGCTGGCATTGGCG
CGACATGCCTCAACTGCCTTGCCACCCACCAAGGCGCTGACCCACTTGAC
GACCACGGTAGACTCGCTGGCTTTCAATCATGACGGGCAGCTGTTGGCGA
TGGCGTCGAAGTGGGATCGGGACGCCCTGCGGGTGGTGCACGTGCCCTCT
CGCACGGTGTATGCGAACTGGCCGACGGGGCAGACGCCTGTAAGGTATCC
GTCTGCACTGGCTTTCAGTCCGAATAGTGGGATGCTCGCAGTGGGGAATG
ATAGGGGGCGGGTGTTACTGTATCGGTTGAAACATTACGATAGAGCGTGA
back to top

Coding sequence (CDS) from alignment at scaffold_17:103896..104945+

>mRNA_6789 ID=mRNA_6789|Name=jgi.p|Nanoce1779_2|623660|organism=Nannochloropsis oceanica|type=CDS|length=1050bp|location=Sequence derived from alignment at scaffold_17:103896..104945+ (Nannochloropsis oceanica)
ATGGCGGGTAACGAAAAACTGCAGCCGGAGACCTTGGAGGTGGTACGTTG
CAGGGACGCCAACATGCAAGAACCCTCCAAGGCCATGGTTCAAGCGGTAC
AATTTCATCCCTCGACGGGCGGATTGTTGTTTACGGCGGGCTTGGACAAG
ACACTGCGATTTTTTCAGGTGGATGGGAAGAGGAACGAAAAGGTGGCTGG
GGTGTTTTTCCCTGACCTGCCCATCCTGTCGGCTTCTTTCGTGGATCCGT
CGAGGGCTGGTGAATTTGAACAGGTGGTGGTGAGTGGGAGAAGGCCTTTT
TTTTATTGGTATGACACCGTTTCGGGAACGGCTGTGAGGGTTCATCGATT
GATAGGACGAGAAGAAAAGAGCTTGGAGAGGTTCGTGGCTTCTCCGGATG
GGCAGTGGCTGGCATTCACGGGTAAGGACGGGTATATCATATTGGTGGGC
GCAAAGAGCAAGCAGTGGGCTGGGGAGTTCAAGATGAATGGGACGGCGCG
ATCTATGTCGTTCAGTGCGGATGGCCAGCATCTGCTCGCCTCGGGGGGCG
ACGCCGTTGTGTACCGATGGGATTTGCGCTCGACCCGATGCCTCGCTCGG
TTCCACAACGAGGGAGGAACGGTTACTTCAGCCTTGGCTGCTTCGTTGGC
GGGTATGACAGCCGTGGGGGCCGAAAGTGGAGTGGTGAATCTATACGAGG
ACTCCGACGTGTTGGGAAGGGTGGAGAGGGAGGGAGGGCTGGCATTGGCG
CGACATGCCTCAACTGCCTTGCCACCCACCAAGGCGCTGACCCACTTGAC
GACCACGGTAGACTCGCTGGCTTTCAATCATGACGGGCAGCTGTTGGCGA
TGGCGTCGAAGTGGGATCGGGACGCCCTGCGGGTGGTGCACGTGCCCTCT
CGCACGGTGTATGCGAACTGGCCGACGGGGCAGACGCCTGTAAGGTATCC
GTCTGCACTGGCTTTCAGTCCGAATAGTGGGATGCTCGCAGTGGGGAATG
ATAGGGGGCGGGTGTTACTGTATCGGTTGAAACATTACGATAGAGCGTGA
back to top
Synonyms
Publications