jgi.p|Nanoce1779_2|112563, mRNA_6784 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|112563
Unique Name	mRNA_6784
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2253
Alignment location	scaffold_17:89297..91729 -

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Properties


Property Name	Value
TranscriptId	112649
Track	FilteredModels2
ProteinId	112563

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:89297..91729 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|112563	gene_6784	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|112563	mRNA_6784-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6784	CDS_6784	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:89297..91729-
coding sequence from alignment at scaffold_17:89297..91729-

mRNA sequence

>mRNA_6784 ID=mRNA_6784|Name=jgi.p|Nanoce1779_2|112563|organism=Nannochloropsis oceanica|type=mRNA|length=2253bp
CCCTTTCATGGCCACCGCCAGCTCGTACTTGCGCAAGGTCAAAGCCTTGA
TATTCAGGGCTACGGGTTTACACCGTTGCTTTTTGCCCAAGATTAGAAGT
GCCTCGAACAGAATTACAAAGAAAAGGAGCGGTAGCAAATACGGCGACGG
AGGCTCCAGCAGCGTGATGGCCATGCCGACGATGCGTACTGAGGTTACTG
GATGGTCCTGCAAGTCGGTGCACCACTGAAGACGCGGCAGCCACAGTCTC
CGCGGCGCCATCTTCATCACCACATCTTACAACATGGCCCGGCGCCGCTC
CTCCACCGCACTCACAAGACCATTCAGAAGACCCAATCACCATCGGTATC
AAACCAATTTCCTTCTTCTCCTGGCCACGATGATCACATCCGTGGCAGCT
AGACCAACGCCGTCAAAAGCCACCTTTCTTCCTGTCCTGAACCCCCCCCC
GCGACCTCGGGGTGCCCGCCGCCATGCACAACACCAATCAAATCAACTAA
TTGACACGAGTCTGGACAACGGCACGACCACAGGAACATTCGCCGAGCTC
TATGGTGAGCGGCTGCCGAATTGGTTGCTGTCACGTGTCGAAAGCTTGGG
CTTTACAAGGCCGACGATGGTCCAGCGAGAGGCGTTGGGGGCTATTTTGG
ATGGAGAGGACGTGGTGATCCAGGCGCAGACGGGCACGGGCAAGACACTC
GCCTTTCTGTTGCCGTTGCTGGCGGGTATTGATGCAAGCAAACAGGCCGT
GCAGGCCATGGTGGTGGTTCCGAGCCGAGAATTGGGGTTGCAGGTGGCAA
GCGTGGCCAAGCAGCTATCTGCAGGGCGGGTCTATTACCGAGACGAGGAA
GTGCAAGACGATGACGATGATGACGTTAACGCCGACGACGAAGAAGCTGA
TAGCAGCACCGCCACCATTTTTACTCCGACTGTCAACGGCACGAGCAACA
AGATCCTAGTCATGTCCCTCCTTGAAGGCTCTAAAAACACCAGGCAAAAA
GCCTGGGTGCTGGCCGAGCCGCCACACGTGGTGATTGGCAACCCTCTTGC
TCTCTCCCGCCTTGTAGAACAAGGCGGTATCCGTTACCACCAGGTTAAGA
TGGTTGTTATTGACGAAGTGGATGCCTGCCTCACCCGCCGGGAGACCCGA
GCGCAGCTACAGGCGCTGCTTGGAAAATACCTGTCGCCTTCCTTCTTGAC
CTCCGAGCTAGAAGAAGAGGCGGCATTGGCGGCTAAGGGAGGTAAAGGGG
ACGAGACGCTCCTGATCCCTCAGGGTGCTATGAAGGAAGACGGGGTCGGG
AGCGGCGGTGACGAGGCCCGGCAGTTGGCACCTTGGAAACTGGTGCAGCG
GCAAACCGTGTTTGTCAGCGCCACCATCCCCCAACACAACCACTTTATCA
AGCAATGCGTGCAGCAGCAATGGACCTTACGACAGCCTATCCACGTACAA
GTCACCCCTGGAGAACTCATGCCCCCTCAGCTCCAACACTATTACCTCGT
TTGCCCCACCAAAGCCGAGAAGCTCGCTGCGCTTCGAGCGTTCTTGCGAA
GGGAGCAGTCGAAAGGCAGGTTGCAGGCATGTGCAATCTTCACAGCAGAT
GACCAGGATGCAGAAGTTATCGCCGCAGGGTTAGTGGAAAGCGATGGGTT
GGATGAGGAAGAAGAGGAGGAGGGGGGAAAGAAGAGGAAGGGTGGGTTGC
AGGCTTTGTTGAACAAAGACCACATCAAGCGACGGGCTAAGGTGATGGAT
GCCTTTCGCGCGGGCGAGTCCCGAGTGTTGGTCACAACTGACTTTGCGGC
ACGTGGGTTGGATATTCCACGGATAAGCCATGTGGCTATGTACGATATCC
CCGCGGATGCCGAGACGTACTTGCATAGGGGCGGGAGGGCGGGGAGGATG
GGGAGAGCGGGGTCGGTAACGTCGTTGGTATCGGAGACGGAGGAGTTCGC
GCTATCGCGGCTGGCCAACACGTTGAAGATTAAGATGAGGCGGCTGGGGG
TTATGAGAAAGGCGGGGCGAGGAGAAACGGAAAGGAAACGGGGAAAGAGG
TAGAGATGGGGGTGCAAGTGTAGTGTACAGAGAGTAAATTGCAAAGTAAA
GAAATGTTTTCATACCCACATCGACGACAGGGGCACATGAAGGATGCGAC
GAGTAATGCAGATGGAAAGACTTTTGTACATGTTTATTATCGTCTTTCGT
AAAATCTGTTGGGGAGAAGATTCAAGCCTAATGCCCCTTCTTCCATGTGA
GCG

protein sequence of jgi.p|Nanoce1779_2|112563

>mRNA_6784-protein ID=mRNA_6784-protein|Name=jgi.p|Nanoce1779_2|112563|organism=Nannochloropsis oceanica|type=polypeptide|length=590bp
MARRRSSTALTRPFRRPNHHRYQTNFLLLLATMITSVAARPTPSKATFLP
VLNPPPRPRGARRHAQHQSNQLIDTSLDNGTTTGTFAELYGERLPNWLLS
RVESLGFTRPTMVQREALGAILDGEDVVIQAQTGTGKTLAFLLPLLAGID
ASKQAVQAMVVVPSRELGLQVASVAKQLSAGRVYYRDEEVQDDDDDDVNA
DDEEADSSTATIFTPTVNGTSNKILVMSLLEGSKNTRQKAWVLAEPPHVV
IGNPLALSRLVEQGGIRYHQVKMVVIDEVDACLTRRETRAQLQALLGKYL
SPSFLTSELEEEAALAAKGGKGDETLLIPQGAMKEDGVGSGGDEARQLAP
WKLVQRQTVFVSATIPQHNHFIKQCVQQQWTLRQPIHVQVTPGELMPPQL
QHYYLVCPTKAEKLAALRAFLRREQSKGRLQACAIFTADDQDAEVIAAGL
VESDGLDEEEEEEGGKKRKGGLQALLNKDHIKRRAKVMDAFRAGESRVLV
TTDFAARGLDIPRISHVAMYDIPADAETYLHRGGRAGRMGRAGSVTSLVS
ETEEFALSRLANTLKIKMRRLGVMRKAGRGETERKRGKR*

mRNA from alignment at scaffold_17:89297..91729-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6784 ID=mRNA_6784|Name=jgi.p|Nanoce1779_2|112563|organism=Nannochloropsis oceanica|type=mRNA|length=2433bp|location=Sequence derived from alignment at scaffold_17:89297..91729- (Nannochloropsis oceanica)
CCCTTTCATGGCCACCGCCAGCTCGTACTTGCGCAAGGTCAAAGCCTTGA
TATTCAGGGCTACGGGTTTACACCGTTGCTTTTTGCCCAAGATTAGAAGT
GCCTCGAACAGAATTACAAAGAAAAGGAGCGGTAGCAAATACGGCGACGG
AGGCTCCAGCAGCGTGATGGCCATGCCGACGATGCGTACTGAGGTTACTG
GATGGTATGAAAGAGTGAATTTGTGTGAGATCCTGTTTAGTTGAGGTGTA
CTACAGTGTAAAAATCGAGGCGCGGCAACAATAATATAGCTATTGCTATA
GCTATTCCTGTCAGATGATTCTGTTTGGTCAGGCGAGCTTTCTCGCTCTC
AACGTAGCTTTATCCAAAACACACACACACACAGGTCCTGCAAGTCGGTG
CACCACTGAAGACGCGGCAGCCACAGTCTCCGCGGCGCCATCTTCATCAC
CACATCTTACAACATGGCCCGGCGCCGCTCCTCCACCGCACTCACAAGAC
CATTCAGAAGACCCAATCACCATCGGTATCAAACCAATTTCCTTCTTCTC
CTGGCCACGATGATCACATCCGTGGCAGCTAGACCAACGCCGTCAAAAGC
CACCTTTCTTCCTGTCCTGAACCCCCCCCCGCGACCTCGGGGTGCCCGCC
GCCATGCACAACACCAATCAAATCAACTAATTGACACGAGTCTGGACAAC
GGCACGACCACAGGAACATTCGCCGAGCTCTATGGTGAGCGGCTGCCGAA
TTGGTTGCTGTCACGTGTCGAAAGCTTGGGCTTTACAAGGCCGACGATGG
TCCAGCGAGAGGCGTTGGGGGCTATTTTGGATGGAGAGGACGTGGTGATC
CAGGCGCAGACGGGCACGGGCAAGACACTCGCCTTTCTGTTGCCGTTGCT
GGCGGGTATTGATGCAAGCAAACAGGCCGTGCAGGCCATGGTGGTGGTTC
CGAGCCGAGAATTGGGGTTGCAGGTGGCAAGCGTGGCCAAGCAGCTATCT
GCAGGGCGGGTCTATTACCGAGACGAGGAAGTGCAAGACGATGACGATGA
TGACGTTAACGCCGACGACGAAGAAGCTGATAGCAGCACCGCCACCATTT
TTACTCCGACTGTCAACGGCACGAGCAACAAGATCCTAGTCATGTCCCTC
CTTGAAGGCTCTAAAAACACCAGGCAAAAAGCCTGGGTGCTGGCCGAGCC
GCCACACGTGGTGATTGGCAACCCTCTTGCTCTCTCCCGCCTTGTAGAAC
AAGGCGGTATCCGTTACCACCAGGTTAAGATGGTTGTTATTGACGAAGTG
GATGCCTGCCTCACCCGCCGGGAGACCCGAGCGCAGCTACAGGCGCTGCT
TGGAAAATACCTGTCGCCTTCCTTCTTGACCTCCGAGCTAGAAGAAGAGG
CGGCATTGGCGGCTAAGGGAGGTAAAGGGGACGAGACGCTCCTGATCCCT
CAGGGTGCTATGAAGGAAGACGGGGTCGGGAGCGGCGGTGACGAGGCCCG
GCAGTTGGCACCTTGGAAACTGGTGCAGCGGCAAACCGTGTTTGTCAGCG
CCACCATCCCCCAACACAACCACTTTATCAAGCAATGCGTGCAGCAGCAA
TGGACCTTACGACAGCCTATCCACGTACAAGTCACCCCTGGAGAACTCAT
GCCCCCTCAGCTCCAACACTATTACCTCGTTTGCCCCACCAAAGCCGAGA
AGCTCGCTGCGCTTCGAGCGTTCTTGCGAAGGGAGCAGTCGAAAGGCAGG
TTGCAGGCATGTGCAATCTTCACAGCAGATGACCAGGATGCAGAAGTTAT
CGCCGCAGGGTTAGTGGAAAGCGATGGGTTGGATGAGGAAGAAGAGGAGG
AGGGGGGAAAGAAGAGGAAGGGTGGGTTGCAGGCTTTGTTGAACAAAGAC
CACATCAAGCGACGGGCTAAGGTGATGGATGCCTTTCGCGCGGGCGAGTC
CCGAGTGTTGGTCACAACTGACTTTGCGGCACGTGGGTTGGATATTCCAC
GGATAAGCCATGTGGCTATGTACGATATCCCCGCGGATGCCGAGACGTAC
TTGCATAGGGGCGGGAGGGCGGGGAGGATGGGGAGAGCGGGGTCGGTAAC
GTCGTTGGTATCGGAGACGGAGGAGTTCGCGCTATCGCGGCTGGCCAACA
CGTTGAAGATTAAGATGAGGCGGCTGGGGGTTATGAGAAAGGCGGGGCGA
GGAGAAACGGAAAGGAAACGGGGAAAGAGGTAGAGATGGGGGTGCAAGTG
TAGTGTACAGAGAGTAAATTGCAAAGTAAAGAAATGTTTTCATACCCACA
TCGACGACAGGGGCACATGAAGGATGCGACGAGTAATGCAGATGGAAAGA
CTTTTGTACATGTTTATTATCGTCTTTCGTAAAATCTGTTGGGGAGAAGA
TTCAAGCCTAATGCCCCTTCTTCCATGTGAGCG

Coding sequence (CDS) from alignment at scaffold_17:89297..91729-

>mRNA_6784 ID=mRNA_6784|Name=jgi.p|Nanoce1779_2|112563|organism=Nannochloropsis oceanica|type=CDS|length=1770bp|location=Sequence derived from alignment at scaffold_17:89297..91729- (Nannochloropsis oceanica)
ATGGCCCGGCGCCGCTCCTCCACCGCACTCACAAGACCATTCAGAAGACC
CAATCACCATCGGTATCAAACCAATTTCCTTCTTCTCCTGGCCACGATGA
TCACATCCGTGGCAGCTAGACCAACGCCGTCAAAAGCCACCTTTCTTCCT
GTCCTGAACCCCCCCCCGCGACCTCGGGGTGCCCGCCGCCATGCACAACA
CCAATCAAATCAACTAATTGACACGAGTCTGGACAACGGCACGACCACAG
GAACATTCGCCGAGCTCTATGGTGAGCGGCTGCCGAATTGGTTGCTGTCA
CGTGTCGAAAGCTTGGGCTTTACAAGGCCGACGATGGTCCAGCGAGAGGC
GTTGGGGGCTATTTTGGATGGAGAGGACGTGGTGATCCAGGCGCAGACGG
GCACGGGCAAGACACTCGCCTTTCTGTTGCCGTTGCTGGCGGGTATTGAT
GCAAGCAAACAGGCCGTGCAGGCCATGGTGGTGGTTCCGAGCCGAGAATT
GGGGTTGCAGGTGGCAAGCGTGGCCAAGCAGCTATCTGCAGGGCGGGTCT
ATTACCGAGACGAGGAAGTGCAAGACGATGACGATGATGACGTTAACGCC
GACGACGAAGAAGCTGATAGCAGCACCGCCACCATTTTTACTCCGACTGT
CAACGGCACGAGCAACAAGATCCTAGTCATGTCCCTCCTTGAAGGCTCTA
AAAACACCAGGCAAAAAGCCTGGGTGCTGGCCGAGCCGCCACACGTGGTG
ATTGGCAACCCTCTTGCTCTCTCCCGCCTTGTAGAACAAGGCGGTATCCG
TTACCACCAGGTTAAGATGGTTGTTATTGACGAAGTGGATGCCTGCCTCA
CCCGCCGGGAGACCCGAGCGCAGCTACAGGCGCTGCTTGGAAAATACCTG
TCGCCTTCCTTCTTGACCTCCGAGCTAGAAGAAGAGGCGGCATTGGCGGC
TAAGGGAGGTAAAGGGGACGAGACGCTCCTGATCCCTCAGGGTGCTATGA
AGGAAGACGGGGTCGGGAGCGGCGGTGACGAGGCCCGGCAGTTGGCACCT
TGGAAACTGGTGCAGCGGCAAACCGTGTTTGTCAGCGCCACCATCCCCCA
ACACAACCACTTTATCAAGCAATGCGTGCAGCAGCAATGGACCTTACGAC
AGCCTATCCACGTACAAGTCACCCCTGGAGAACTCATGCCCCCTCAGCTC
CAACACTATTACCTCGTTTGCCCCACCAAAGCCGAGAAGCTCGCTGCGCT
TCGAGCGTTCTTGCGAAGGGAGCAGTCGAAAGGCAGGTTGCAGGCATGTG
CAATCTTCACAGCAGATGACCAGGATGCAGAAGTTATCGCCGCAGGGTTA
GTGGAAAGCGATGGGTTGGATGAGGAAGAAGAGGAGGAGGGGGGAAAGAA
GAGGAAGGGTGGGTTGCAGGCTTTGTTGAACAAAGACCACATCAAGCGAC
GGGCTAAGGTGATGGATGCCTTTCGCGCGGGCGAGTCCCGAGTGTTGGTC
ACAACTGACTTTGCGGCACGTGGGTTGGATATTCCACGGATAAGCCATGT
GGCTATGTACGATATCCCCGCGGATGCCGAGACGTACTTGCATAGGGGCG
GGAGGGCGGGGAGGATGGGGAGAGCGGGGTCGGTAACGTCGTTGGTATCG
GAGACGGAGGAGTTCGCGCTATCGCGGCTGGCCAACACGTTGAAGATTAA
GATGAGGCGGCTGGGGGTTATGAGAAAGGCGGGGCGAGGAGAAACGGAAA
GGAAACGGGGAAAGAGGTAG

Synonyms

Publications