jgi.p|Nanoce1779_2|596305, mRNA_6783 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596305
Unique NamemRNA_6783
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1098
Alignment locationscaffold_17:88239..89670 +

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Properties
Property NameValue
TranscriptId596391
TrackFilteredModels2
ProteinId596305
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:88239..89670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596305gene_6783Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596305mRNA_6783-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6783CDS_6783Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6783 ID=mRNA_6783|Name=jgi.p|Nanoce1779_2|596305|organism=Nannochloropsis oceanica|type=mRNA|length=1098bp
ACAGCGAGTCCCAAGCATCACCTAAGGTAGTACCGCGACTAGCAGCAGCC
ACAGCAGCAGCAAATCATGATTGAGGGTCTCCAGGCGATCGACCCGGAGT
ATGAGGAGCGGATGCTTGCCTTTGAGATAGATTGTGACAAAGGCAAAGGG
GATGCCTGGGCCTGCCACTCAGTTGGGGAGTTTCTGGCTGTCGTCAAGGG
CGACTACAATAAAGCTGCAAAGGTATACACGGATAATTGCACTAAGTATA
GCCATCCTCCCTCATGTTTCAACCTTGGTCGTCTCTTTTTGGGTGGGCGA
GGCGTCCCGCAGAGCGACGCCCGGTCCCTGAAGTGCTTCGAGACCTCCTG
CAAAGCTGGGCATGGTATGGCCTGCCATCACATGGGGCTGCTCCTTTTGT
ACGGGAAAGATGGGGGCTACGACGTTGGTAAGGACCTCAAGAAAGCGACG
TCCATCTTGGATAAGGCCTGTGGGGAGGGCATCCCGGATAGTTGTTATGC
GTTGGCTAGCCACTTGCTGCGCACCCTGCCTGAGGACAAGATGCACAAGC
GGGACCCTTTGCGGGCGAAGGGTTTATTGGAAAAGGGTTGTGCGCGGGGC
CATGGACCCTCATGCTTCAATTTGGCGGTGATGCACAAGAAGGGCGATGA
GGGGATTCCCAAGAACGAGCAGGAGTTCGAAAAGTTCAAAAGAGTAACCG
AGGAGCTAGTGGAGCAAACAGGCTCGCTCACATGGAAGAAGGGGCATTAG
GCTTGAATCTTCTCCCCAACAGATTTTACGAAAGACGATAATAAACATGT
ACAAAAGTCTTTCCATCTGCATTACTCGTCGCATCCTTCATGTGCCCCTG
TCGTCGATGTGGGTATGAAAACATTTCTTTACTTTGCAATTTACTCTCTG
TACACTACACTTGCACCCCCATCTCTACCTCTTTCCCCGTTTCCTTTCCG
TTTCTCCTCGCCCCGCCTTTCTCATAACCCCCAGCCGCCTCATCTTAATC
TTCAACGTGTTGGCCAGCCGCGATAGCGCGAACTCCTCCGTCTCCGATAC
CAACGACGTTACCGACCCCGCTCTCCCCATCCTCCCCGCCCTCCCGCC
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protein sequence of jgi.p|Nanoce1779_2|596305

>mRNA_6783-protein ID=mRNA_6783-protein|Name=jgi.p|Nanoce1779_2|596305|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MIEGLQAIDPEYEERMLAFEIDCDKGKGDAWACHSVGEFLAVVKGDYNKA
AKVYTDNCTKYSHPPSCFNLGRLFLGGRGVPQSDARSLKCFETSCKAGHG
MACHHMGLLLLYGKDGGYDVGKDLKKATSILDKACGEGIPDSCYALASHL
LRTLPEDKMHKRDPLRAKGLLEKGCARGHGPSCFNLAVMHKKGDEGIPKN
EQEFEKFKRVTEELVEQTGSLTWKKGH*
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mRNA from alignment at scaffold_17:88239..89670+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6783 ID=mRNA_6783|Name=jgi.p|Nanoce1779_2|596305|organism=Nannochloropsis oceanica|type=mRNA|length=1432bp|location=Sequence derived from alignment at scaffold_17:88239..89670+ (Nannochloropsis oceanica)
ACAGCGAGTCCCAAGCATCACCTAAGGTAGTACCGCGACTAGCAGCAGCC
ACAGCAGCAGCAAATCATGATTGAGGGTCTCCAGGCGATCGACCCGGAGT
ATGAGGAGCGGATGCTTGCCTTTGAGATAGATTGTGACAAAGGCAAAGGG
GATGCCTGGGCCTGCCACTCAGTTGGGGAGTTTCTGGCTGTCGTCAAGGT
ATGTTTTGAGGCTATGGGAATAATATGCTAATCAAAGAAACAGTGCAGGC
GTGTTAGGATGGGGTTGCTTTGTGTCTGCCGAACAGAAATCGGGCAGTTA
GGGTCAGAAAGAGGCTGACTCCCTCATCCCGTCCTACCCTACCCCCACCT
TGCGGAAATTATCGTAGGGCGACTACAATAAAGCTGCAAAGGTATACACG
GATAATTGCACTAAGTATAGCCATCCTCCCTCATGTTTCAACCTTGGTCG
TCTCTTTTTGGGTGGGCGAGGCGTCCCGCAGAGCGACGCCCGGTCCCTGA
AGTGCTTCGAGACCTCCTGCAAAGCTGGGCATGGTATGGCCTGCCATCAC
ATGGGGCTGCTCCTTTTGTACGGGAAAGATGGGGGCTACGACGTTGGTAA
GGACCTCAAGAAAGCGACGTCCATCTTGGATAAGGCCTGTGGGGAGGGCA
TCCCGGATAGTTGTTATGCGTTGGCTAGCCACTTGCTGCGCACCCTGCCT
GAGGACAAGATGCACAAGCGGGACCCTTTGCGGGCGAAGGGTTTATTGGA
AAAGGGTTGTGCGCGGGGCCATGGACCCTCATGCTTCAATTTGGCGGTGA
TGCACAAGAAGGGCGATGAGGGGATTCCCAAGTACGTGATGTCAGTGGAG
TTGGAGTAGGGTGCAGGTTGGGTCTCCGTTACAAACCAACAACCGGGCTT
TCTTGCATTTCACCCACGTCCTAACGAGGACCAGATCATCCACCCACCTC
TTCTCTTTCATTTTCACTGACATACTTCTCTACCGCAACAATACAGGAAC
GAGCAGGAGTTCGAAAAGTTCAAAAGAGTAACCGAGGAGCTAGTGGAGCA
AACAGGCTCGCTCACATGGAAGAAGGGGCATTAGGCTTGAATCTTCTCCC
CAACAGATTTTACGAAAGACGATAATAAACATGTACAAAAGTCTTTCCAT
CTGCATTACTCGTCGCATCCTTCATGTGCCCCTGTCGTCGATGTGGGTAT
GAAAACATTTCTTTACTTTGCAATTTACTCTCTGTACACTACACTTGCAC
CCCCATCTCTACCTCTTTCCCCGTTTCCTTTCCGTTTCTCCTCGCCCCGC
CTTTCTCATAACCCCCAGCCGCCTCATCTTAATCTTCAACGTGTTGGCCA
GCCGCGATAGCGCGAACTCCTCCGTCTCCGATACCAACGACGTTACCGAC
CCCGCTCTCCCCATCCTCCCCGCCCTCCCGCC
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Coding sequence (CDS) from alignment at scaffold_17:88239..89670+

>mRNA_6783 ID=mRNA_6783|Name=jgi.p|Nanoce1779_2|596305|organism=Nannochloropsis oceanica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_17:88239..89670+ (Nannochloropsis oceanica)
ATGATTGAGGGTCTCCAGGCGATCGACCCGGAGTATGAGGAGCGGATGCT
TGCCTTTGAGATAGATTGTGACAAAGGCAAAGGGGATGCCTGGGCCTGCC
ACTCAGTTGGGGAGTTTCTGGCTGTCGTCAAGGGCGACTACAATAAAGCT
GCAAAGGTATACACGGATAATTGCACTAAGTATAGCCATCCTCCCTCATG
TTTCAACCTTGGTCGTCTCTTTTTGGGTGGGCGAGGCGTCCCGCAGAGCG
ACGCCCGGTCCCTGAAGTGCTTCGAGACCTCCTGCAAAGCTGGGCATGGT
ATGGCCTGCCATCACATGGGGCTGCTCCTTTTGTACGGGAAAGATGGGGG
CTACGACGTTGGTAAGGACCTCAAGAAAGCGACGTCCATCTTGGATAAGG
CCTGTGGGGAGGGCATCCCGGATAGTTGTTATGCGTTGGCTAGCCACTTG
CTGCGCACCCTGCCTGAGGACAAGATGCACAAGCGGGACCCTTTGCGGGC
GAAGGGTTTATTGGAAAAGGGTTGTGCGCGGGGCCATGGACCCTCATGCT
TCAATTTGGCGGTGATGCACAAGAAGGGCGATGAGGGGATTCCCAAGAAC
GAGCAGGAGTTCGAAAAGTTCAAAAGAGTAACCGAGGAGCTAGTGGAGCA
AACAGGCTCGCTCACATGGAAGAAGGGGCATTAGATGATTGAGGGTCTCC
AGGCGATCGACCCGGAGTATGAGGAGCGGATGCTTGCCTTTGAGATAGAT
TGTGACAAAGGCAAAGGGGATGCCTGGGCCTGCCACTCAGTTGGGGAGTT
TCTGGCTGTCGTCAAGGGCGACTACAATAAAGCTGCAAAGGTATACACGG
ATAATTGCACTAAGTATAGCCATCCTCCCTCATGTTTCAACCTTGGTCGT
CTCTTTTTGGGTGGGCGAGGCGTCCCGCAGAGCGACGCCCGGTCCCTGAA
GTGCTTCGAGACCTCCTGCAAAGCTGGGCATGGTATGGCCTGCCATCACA
TGGGGCTGCTCCTTTTGTACGGGAAAGATGGGGGCTACGACGTTGGTAAG
GACCTCAAGAAAGCGACGTCCATCTTGGATAAGGCCTGTGGGGAGGGCAT
CCCGGATAGTTGTTATGCGTTGGCTAGCCACTTGCTGCGCACCCTGCCTG
AGGACAAGATGCACAAGCGGGACCCTTTGCGGGCGAAGGGTTTATTGGAA
AAGGGTTGTGCGCGGGGCCATGGACCCTCATGCTTCAATTTGGCGGTGAT
GCACAAGAAGGGCGATGAGGGGATTCCCAAGAACGAGCAGGAGTTCGAAA
AGTTCAAAAGAGTAACCGAGGAGCTAGTGGAGCAAACAGGCTCGCTCACA
TGGAAGAAGGGGCATTAGATGATTGAGGGTCTCCAGGCGATCGACCCGGA
GTATGAGGAGCGGATGCTTGCCTTTGAGATAGATTGTGACAAAGGCAAAG
GGGATGCCTGGGCCTGCCACTCAGTTGGGGAGTTTCTGGCTGTCGTCAAG
GGCGACTACAATAAAGCTGCAAAGGTATACACGGATAATTGCACTAAGTA
TAGCCATCCTCCCTCATGTTTCAACCTTGGTCGTCTCTTTTTGGGTGGGC
GAGGCGTCCCGCAGAGCGACGCCCGGTCCCTGAAGTGCTTCGAGACCTCC
TGCAAAGCTGGGCATGGTATGGCCTGCCATCACATGGGGCTGCTCCTTTT
GTACGGGAAAGATGGGGGCTACGACGTTGGTAAGGACCTCAAGAAAGCGA
CGTCCATCTTGGATAAGGCCTGTGGGGAGGGCATCCCGGATAGTTGTTAT
GCGTTGGCTAGCCACTTGCTGCGCACCCTGCCTGAGGACAAGATGCACAA
GCGGGACCCTTTGCGGGCGAAGGGTTTATTGGAAAAGGGTTGTGCGCGGG
GCCATGGACCCTCATGCTTCAATTTGGCGGTGATGCACAAGAAGGGCGAT
GAGGGGATTCCCAAGAACGAGCAGGAGTTCGAAAAGTTCAAAAGAGTAAC
CGAGGAGCTAGTGGAGCAAACAGGCTCGCTCACATGGAAGAAGGGGCATT
AG
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Synonyms
Publications