jgi.p|Nanoce1779_2|596302, mRNA_6782 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596302
Unique NamemRNA_6782
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length753
Alignment locationscaffold_17:87228..87980 -

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Properties
Property NameValue
TranscriptId596388
TrackFilteredModels2
ProteinId596302
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:87228..87980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596302gene_6782Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596302mRNA_6782-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6782CDS_6782Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6782 ID=mRNA_6782|Name=jgi.p|Nanoce1779_2|596302|organism=Nannochloropsis oceanica|type=mRNA|length=753bp
ACAGCCAGGCATTTCCCTGCTGCTGCATGCTTCTGTCAGTGTCCTACACA
TTCTTCAGCCGCGGCCTCAAATCTGCTGCCTGCTTGTGCCTCGCTGCGTC
GTACTCTTTCTCTCCTGTTTGGCTCCACCTTCCTGCTACTTCCTCGTCGG
CCTTGAGAATGAGCACCGGTGGCAGCTTTTGTTACAGGTACCCTCGACCA
TCCGTCACTGTAGACACTCTAATTTTTTGTGCGGAGAATAATGATGTCAA
GCTCTTGCTTATCAAGCGTGGTAATGACCCATTCAAAGGTACATGGGCAT
TGCCGGGTGGTTTCGTTGACAAGGACGAGGGCTTGGACGACGCAGCGGCC
CGTGAGCTCAAGGAAGAAACAGGGCTTGACAATATTTCATTCGCACAAGT
CGGGAGCTTTGGTGACCCCGGCCGAGATCCGCGAGGGCACACAGTCACCG
TTGCTTACGCTGCCTTTTTGCTTTCGTCGAAGGGCACAAAAGCAGGCGAC
GATGCGAGTGCCGCGGCCTTCTTCCCCTTCGGCCAACTTCCTCCACTTGC
CTTCGACCATCGAACAATCATTCAAGAGGCGTGGCCGAGATTAATAGTAT
GTGAGAGCGGGGGCAAGACCGTTGTGAAGGAGCGTGGATCGGCGAAAGTG
CTGTGTGTGTTGCCAGACGCCAAGTCGGTGGAACTCGTCCGCAGCGCCAC
ACCCTTCTCATAGTGAACAAGAGAAACAGAGAAAAGAAGAGTAAACAAAA
GAG
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protein sequence of jgi.p|Nanoce1779_2|596302

>mRNA_6782-protein ID=mRNA_6782-protein|Name=jgi.p|Nanoce1779_2|596302|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MLLSVSYTFFSRGLKSAACLCLAASYSFSPVWLHLPATSSSALRMSTGGS
FCYRYPRPSVTVDTLIFCAENNDVKLLLIKRGNDPFKGTWALPGGFVDKD
EGLDDAAARELKEETGLDNISFAQVGSFGDPGRDPRGHTVTVAYAAFLLS
SKGTKAGDDASAAAFFPFGQLPPLAFDHRTIIQEAWPRLIVCESGGKTVV
KERGSAKVLCVLPDAKSVELVRSATPFS*
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mRNA from alignment at scaffold_17:87228..87980-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6782 ID=mRNA_6782|Name=jgi.p|Nanoce1779_2|596302|organism=Nannochloropsis oceanica|type=mRNA|length=753bp|location=Sequence derived from alignment at scaffold_17:87228..87980- (Nannochloropsis oceanica)
ACAGCCAGGCATTTCCCTGCTGCTGCATGCTTCTGTCAGTGTCCTACACA
TTCTTCAGCCGCGGCCTCAAATCTGCTGCCTGCTTGTGCCTCGCTGCGTC
GTACTCTTTCTCTCCTGTTTGGCTCCACCTTCCTGCTACTTCCTCGTCGG
CCTTGAGAATGAGCACCGGTGGCAGCTTTTGTTACAGGTACCCTCGACCA
TCCGTCACTGTAGACACTCTAATTTTTTGTGCGGAGAATAATGATGTCAA
GCTCTTGCTTATCAAGCGTGGTAATGACCCATTCAAAGGTACATGGGCAT
TGCCGGGTGGTTTCGTTGACAAGGACGAGGGCTTGGACGACGCAGCGGCC
CGTGAGCTCAAGGAAGAAACAGGGCTTGACAATATTTCATTCGCACAAGT
CGGGAGCTTTGGTGACCCCGGCCGAGATCCGCGAGGGCACACAGTCACCG
TTGCTTACGCTGCCTTTTTGCTTTCGTCGAAGGGCACAAAAGCAGGCGAC
GATGCGAGTGCCGCGGCCTTCTTCCCCTTCGGCCAACTTCCTCCACTTGC
CTTCGACCATCGAACAATCATTCAAGAGGCGTGGCCGAGATTAATAGTAT
GTGAGAGCGGGGGCAAGACCGTTGTGAAGGAGCGTGGATCGGCGAAAGTG
CTGTGTGTGTTGCCAGACGCCAAGTCGGTGGAACTCGTCCGCAGCGCCAC
ACCCTTCTCATAGTGAACAAGAGAAACAGAGAAAAGAAGAGTAAACAAAA
GAG
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Coding sequence (CDS) from alignment at scaffold_17:87228..87980-

>mRNA_6782 ID=mRNA_6782|Name=jgi.p|Nanoce1779_2|596302|organism=Nannochloropsis oceanica|type=CDS|length=687bp|location=Sequence derived from alignment at scaffold_17:87228..87980- (Nannochloropsis oceanica)
ATGCTTCTGTCAGTGTCCTACACATTCTTCAGCCGCGGCCTCAAATCTGC
TGCCTGCTTGTGCCTCGCTGCGTCGTACTCTTTCTCTCCTGTTTGGCTCC
ACCTTCCTGCTACTTCCTCGTCGGCCTTGAGAATGAGCACCGGTGGCAGC
TTTTGTTACAGGTACCCTCGACCATCCGTCACTGTAGACACTCTAATTTT
TTGTGCGGAGAATAATGATGTCAAGCTCTTGCTTATCAAGCGTGGTAATG
ACCCATTCAAAGGTACATGGGCATTGCCGGGTGGTTTCGTTGACAAGGAC
GAGGGCTTGGACGACGCAGCGGCCCGTGAGCTCAAGGAAGAAACAGGGCT
TGACAATATTTCATTCGCACAAGTCGGGAGCTTTGGTGACCCCGGCCGAG
ATCCGCGAGGGCACACAGTCACCGTTGCTTACGCTGCCTTTTTGCTTTCG
TCGAAGGGCACAAAAGCAGGCGACGATGCGAGTGCCGCGGCCTTCTTCCC
CTTCGGCCAACTTCCTCCACTTGCCTTCGACCATCGAACAATCATTCAAG
AGGCGTGGCCGAGATTAATAGTATGTGAGAGCGGGGGCAAGACCGTTGTG
AAGGAGCGTGGATCGGCGAAAGTGCTGTGTGTGTTGCCAGACGCCAAGTC
GGTGGAACTCGTCCGCAGCGCCACACCCTTCTCATAG
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Synonyms
Publications