jgi.p|Nanoce1779_2|596301, mRNA_6781 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596301
Unique Name	mRNA_6781
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1515
Alignment location	scaffold_17:85322..87221 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596387
Track	FilteredModels2
ProteinId	596301

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:85322..87221 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596301	gene_6781	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596301	mRNA_6781-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6781	CDS_6781	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:85322..87221+
coding sequence from alignment at scaffold_17:85322..87221+

mRNA sequence

>mRNA_6781 ID=mRNA_6781|Name=jgi.p|Nanoce1779_2|596301|organism=Nannochloropsis oceanica|type=mRNA|length=1515bp
ACAGGCTCCCCATGCTACCCTTGGCACTACGACGGGGCTCTGCTGCAGTG
CGTCTGCCCGCATTACAGTCGCTCTATCCACCGCTCCACTTGCTTCGACG
GTCGACCTCCTCTATCCTTCCTGACGCAGCAGCCGCAGACGACGCCGATG
CCACCATTCCCACGGTCCGCATGTACAAGTCTAATGAACTAGATGCTGTA
GCCACTCCGTCTGTCCACATACTTCAAAGTGCCGACACCGATGTGCCCAT
TGCCGAGTACTTGGAGGGTGGACAATTGTCTATAGACAGCATCCCCACGC
GCATGGTTGAAATCCCCTGTCCCTTTTCCCACAGTGGCCCACGTCAATAC
GAGACGGTAAAGGTCGCTGTCATCCAAGACACGACCTGCGCCAACTACTG
GTGCTCCCGCCTCGCTCACGTACTGCGAAAGGAATCCGGCCCCGACGGTG
GCGGCGGTGCTGTGGGGCTCGATTTGGAATGGAAGCCTACCTTTCGTGCA
CGGCAAGCTGCCTCCCGCGCCGCCGTATTACAGTTGTCCGGGCCTGGACT
CTGCCTGGTCATCCAGCTACAGCAGCTCAGGCACGTTCCGCGGCAGCTTC
GTCAGATTTTGGCGGATCCAACGCTGTTAAAAGTAGGGGTATCAGTCGAT
GATGATTTGGCCAAACTTCGGCGTGACTGGGGTATGGTTTCCAGTGGGTA
CGTGGACGTCGGACGGGTAGGAGGACGGCTTTTCTTCCATGACAACCCAT
TCCGCACCATGTCCGTGCAAAACATGGCGGCCTCGTTGTGGGGTATCGAT
TTACCCAAGTCGGACGCGATTCGATTGGGGAATTGGGAGCACCCGGAGCT
GTCGACGAAGCAAGTAGAGTACGCGGCCTTGGACGCTATGGCGGGACGGG
CGATTTACCAAGAGTTTTACCGGAGGGGCCTGCTGGACAGGGGCATGCTG
AAGGAGATGATGGAAACGTGGTTGATTTCTTCAGAGGACGACAATAGAAA
GCGTGCGAGGAGTTTGGCGTTGGAATCGGATGTGCTTCGGAGGTTGTACA
CGCGCCTCCAGGGCGAGTCGCCTTCCAAGTCCCGGTCCTCCGCGGCGTCA
CGCTCTTCGAGTTCTGTGAAGCCTAGGAAGAGGTCATCAGGACCCCAGGG
AAAGAGCAGAAATGTTGTCAGTAGGAATAGTGGCAGTAGTAGTATTAGAA
GTAGTAGTAATAGTAGTAATAGTAATAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGCAGCAGAAGCAGCAAGAGCAG
CAGCAACAGGAGCAGCAGCAAATGTAGAGACGCTCCTGTCATTTCTAGCC
AGAGTACCCCTGAACTTTTGCCCGACATTGCCGTGGCTTACAAAGCACTG
AATGGCACGTGACGTTGACGGATAGTGTGAATAGAAGTGAGAAGTGCGAC
AAGGCATGCAAGTATGATGACGACATAATGTAAGTAAAGAAACGAACTCT
GGCTGGCGAGCGTGA

protein sequence of jgi.p|Nanoce1779_2|596301

>mRNA_6781-protein ID=mRNA_6781-protein|Name=jgi.p|Nanoce1779_2|596301|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MLPLALRRGSAAVRLPALQSLYPPLHLLRRSTSSILPDAAAADDADATIP
TVRMYKSNELDAVATPSVHILQSADTDVPIAEYLEGGQLSIDSIPTRMVE
IPCPFSHSGPRQYETVKVAVIQDTTCANYWCSRLAHVLRKESGPDGGGGA
VGLDLEWKPTFRARQAASRAAVLQLSGPGLCLVIQLQQLRHVPRQLRQIL
ADPTLLKVGVSVDDDLAKLRRDWGMVSSGYVDVGRVGGRLFFHDNPFRTM
SVQNMAASLWGIDLPKSDAIRLGNWEHPELSTKQVEYAALDAMAGRAIYQ
EFYRRGLLDRGMLKEMMETWLISSEDDNRKRARSLALESDVLRRLYTRLQ
GESPSKSRSSAASRSSSSVKPRKRSSGPQGKSRNVVSRNSGSSSIRSSSN
SSNSNSSSSSSSSSSSSSSSSSSSRSSKSSSNRSSSKCRDAPVISSQSTP
ELLPDIAVAYKALNGT*

mRNA from alignment at scaffold_17:85322..87221+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6781 ID=mRNA_6781|Name=jgi.p|Nanoce1779_2|596301|organism=Nannochloropsis oceanica|type=mRNA|length=1900bp|location=Sequence derived from alignment at scaffold_17:85322..87221+ (Nannochloropsis oceanica)
ACAGGCTCCCCATGCTACCCTTGGCACTACGACGGGGCTCTGCTGCAGTG
CGTCTGCCCGCATTACAGTCGCTCTATCCACCGCTCCACTTGCTTCGACG
GTCGACCTCCTCTATCCTTCCTGACGCAGCAGCCGCAGACGACGCCGATG
CCACCATTCCCACGGTCCGCATGTACAAGTCTAATGAACTAGATGCTGTA
GCCACTCCGTCTGTCCACATACTTCAAAGTGCCGACACCGATGTGCCCAT
TGCCGAGTACTTGGAGGGTGGACAATTGTCTATAGACAGCATCCCCACGC
GCATGGTTGAAATCCCCTGTCCCTTTTCCCACAGTGGCCCACGTCAATAC
GAGACGGTAAAGGTAGGTGTAGATAAATCATTCGTGTTTGGCATAGAGGG
ATTTGGTGGTACGGCCGCGATACTTTACCACAACAATCAAGCAATACATT
TGATCTCGGTTATCTTCTGTTCTTGATTTTAACCTGTCCAGCATCCTCAC
CACAAAAGATTTGAAAGGCCCGTGGAGCAGCTTGAAGATCCGGCATGTTT
GATATTTTAGGATTTTTCCCACCTGCGTCATGTCGACGTCCTCACCTACT
TCCTTCCTTCTTCTCTTCCTCTGCCTCTTTCACTAGGTCGCTGTCATCCA
AGACACGACCTGCGCCAACTACTGGTGCTCCCGCCTCGCTCACGTACTGC
GAAAGGAATCCGGCCCCGACGGTGGCGGCGGTGCTGTGGGGCTCGATTTG
GAATGGAAGCCTACCTTTCGTGCACGGCAAGCTGCCTCCCGCGCCGCCGT
ATTACAGTTGTCCGGGCCTGGACTCTGCCTGGTCATCCAGCTACAGCAGC
TCAGGCACGTTCCGCGGCAGCTTCGTCAGATTTTGGCGGATCCAACGCTG
TTAAAAGTAGGGGTATCAGTCGATGATGATTTGGCCAAACTTCGGCGTGA
CTGGGGTATGGTTTCCAGTGGGTACGTGGACGTCGGACGGGTAGGAGGAC
GGCTTTTCTTCCATGACAACCCATTCCGCACCATGTCCGTGCAAAACATG
GCGGCCTCGTTGTGGGGTATCGATTTACCCAAGTCGGACGCGATTCGATT
GGGGAATTGGGAGCACCCGGAGCTGTCGACGAAGCAAGTAGAGTACGCGG
CCTTGGACGCTATGGCGGGACGGGCGATTTACCAAGAGTTTTACCGGAGG
GGCCTGCTGGACAGGGGCATGCTGAAGGAGATGATGGAAACGTGGTTGAT
TTCTTCAGAGGACGACAATAGAAAGCGTGCGAGGAGTTTGGCGTTGGAAT
CGGATGTGCTTCGGAGGTTGTACACGCGCCTCCAGGGCGAGTCGCCTTCC
AAGTCCCGGTCCTCCGCGGCGTCACGCTCTTCGAGTTCTGTGAAGCCTAG
GAAGAGGTCATCAGGACCCCAGGGAAAGAGCAGAAATGTTGTCAGTAGGA
ATAGTGGCAGTAGTAGTATTAGAAGTAGTAGTAATAGTAGTAATAGTAAT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG
TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGAAGTAGTAGTAATAGT
AGTAGCAGCAGCAGCAGCAGAAGCAGCAAGAGCAGCAGCAACAGGAGCAG
CAGCAAATGTAGAGACGCTCCTGTCATTTCTAGCCAGAGTACCCCTGAAC
TTTTGCCCGACATTGCCGTGGCTTACAAAGCACTGAATGGCACGTGACGT
TGACGGATAGTGTGAATAGAAGTGAGAAGTGCGACAAGGCATGCAAGTAT
GATGACGACATAATGTAAGTAAAGAAACGAACTCTGGCTGGCGAGCGTGA

Coding sequence (CDS) from alignment at scaffold_17:85322..87221+

>mRNA_6781 ID=mRNA_6781|Name=jgi.p|Nanoce1779_2|596301|organism=Nannochloropsis oceanica|type=CDS|length=4203bp|location=Sequence derived from alignment at scaffold_17:85322..87221+ (Nannochloropsis oceanica)
ATGCTACCCTTGGCACTACGACGGGGCTCTGCTGCAGTGCGTCTGCCCGC
ATTACAGTCGCTCTATCCACCGCTCCACTTGCTTCGACGGTCGACCTCCT
CTATCCTTCCTGACGCAGCAGCCGCAGACGACGCCGATGCCACCATTCCC
ACGGTCCGCATGTACAAGTCTAATGAACTAGATGCTGTAGCCACTCCGTC
TGTCCACATACTTCAAAGTGCCGACACCGATGTGCCCATTGCCGAGTACT
TGGAGGGTGGACAATTGTCTATAGACAGCATCCCCACGCGCATGGTTGAA
ATCCCCTGTCCCTTTTCCCACAGTGGCCCACGTCAATACGAGACGGTAAA
GGTCGCTGTCATCCAAGACACGACCTGCGCCAACTACTGGTGCTCCCGCC
TCGCTCACGTACTGCGAAAGGAATCCGGCCCCGACGGTGGCGGCGGTGCT
GTGGGGCTCGATTTGGAATGGAAGCCTACCTTTCGTGCACGGCAAGCTGC
CTCCCGCGCCGCCGTATTACAGTTGTCCGGGCCTGGACTCTGCCTGGTCA
TCCAGCTACAGCAGCTCAGGCACGTTCCGCGGCAGCTTCGTCAGATTTTG
GCGGATCCAACGCTGTTAAAAGTAGGGGTATCAGTCGATGATGATTTGGC
CAAACTTCGGCGTGACTGGGGTATGGTTTCCAGTGGGTACGTGGACGTCG
GACGGGTAGGAGGACGGCTTTTCTTCCATGACAACCCATTCCGCACCATG
TCCGTGCAAAACATGGCGGCCTCGTTGTGGGGTATCGATTTACCCAAGTC
GGACGCGATTCGATTGGGGAATTGGGAGCACCCGGAGCTGTCGACGAAGC
AAGTAGAGTACGCGGCCTTGGACGCTATGGCGGGACGGGCGATTTACCAA
GAGTTTTACCGGAGGGGCCTGCTGGACAGGGGCATGCTGAAGGAGATGAT
GGAAACGTGGTTGATTTCTTCAGAGGACGACAATAGAAAGCGTGCGAGGA
GTTTGGCGTTGGAATCGGATGTGCTTCGGAGGTTGTACACGCGCCTCCAG
GGCGAGTCGCCTTCCAAGTCCCGGTCCTCCGCGGCGTCACGCTCTTCGAG
TTCTGTGAAGCCTAGGAAGAGGTCATCAGGACCCCAGGGAAAGAGCAGAA
ATGTTGTCAGTAGGAATAGTGGCAGTAGTAGTATTAGAAGTAGTAGTAAT
AGTAGTAATAGTAATAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG
TAGTAGTAGTAGTAGTAGCAGCAGAAGCAGCAAGAGCAGCAGCAACAGGA
GCAGCAGCAAATGTAGAGACGCTCCTGTCATTTCTAGCCAGAGTACCCCT
GAACTTTTGCCCGACATTGCCGTGGCTTACAAAGCACTGAATGGCACGTG
AATGCTACCCTTGGCACTACGACGGGGCTCTGCTGCAGTGCGTCTGCCCG
CATTACAGTCGCTCTATCCACCGCTCCACTTGCTTCGACGGTCGACCTCC
TCTATCCTTCCTGACGCAGCAGCCGCAGACGACGCCGATGCCACCATTCC
CACGGTCCGCATGTACAAGTCTAATGAACTAGATGCTGTAGCCACTCCGT
CTGTCCACATACTTCAAAGTGCCGACACCGATGTGCCCATTGCCGAGTAC
TTGGAGGGTGGACAATTGTCTATAGACAGCATCCCCACGCGCATGGTTGA
AATCCCCTGTCCCTTTTCCCACAGTGGCCCACGTCAATACGAGACGGTAA
AGGTCGCTGTCATCCAAGACACGACCTGCGCCAACTACTGGTGCTCCCGC
CTCGCTCACGTACTGCGAAAGGAATCCGGCCCCGACGGTGGCGGCGGTGC
TGTGGGGCTCGATTTGGAATGGAAGCCTACCTTTCGTGCACGGCAAGCTG
CCTCCCGCGCCGCCGTATTACAGTTGTCCGGGCCTGGACTCTGCCTGGTC
ATCCAGCTACAGCAGCTCAGGCACGTTCCGCGGCAGCTTCGTCAGATTTT
GGCGGATCCAACGCTGTTAAAAGTAGGGGTATCAGTCGATGATGATTTGG
CCAAACTTCGGCGTGACTGGGGTATGGTTTCCAGTGGGTACGTGGACGTC
GGACGGGTAGGAGGACGGCTTTTCTTCCATGACAACCCATTCCGCACCAT
GTCCGTGCAAAACATGGCGGCCTCGTTGTGGGGTATCGATTTACCCAAGT
CGGACGCGATTCGATTGGGGAATTGGGAGCACCCGGAGCTGTCGACGAAG
CAAGTAGAGTACGCGGCCTTGGACGCTATGGCGGGACGGGCGATTTACCA
AGAGTTTTACCGGAGGGGCCTGCTGGACAGGGGCATGCTGAAGGAGATGA
TGGAAACGTGGTTGATTTCTTCAGAGGACGACAATAGAAAGCGTGCGAGG
AGTTTGGCGTTGGAATCGGATGTGCTTCGGAGGTTGTACACGCGCCTCCA
GGGCGAGTCGCCTTCCAAGTCCCGGTCCTCCGCGGCGTCACGCTCTTCGA
GTTCTGTGAAGCCTAGGAAGAGGTCATCAGGACCCCAGGGAAAGAGCAGA
AATGTTGTCAGTAGGAATAGTGGCAGTAGTAGTATTAGAAGTAGTAGTAA
TAGTAGTAATAGTAATAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGCAGCAGAAGCAGCAAGAGCAGCAGCAACAGG
AGCAGCAGCAAATGTAGAGACGCTCCTGTCATTTCTAGCCAGAGTACCCC
TGAACTTTTGCCCGACATTGCCGTGGCTTACAAAGCACTGAATGGCACGT
GAATGCTACCCTTGGCACTACGACGGGGCTCTGCTGCAGTGCGTCTGCCC
GCATTACAGTCGCTCTATCCACCGCTCCACTTGCTTCGACGGTCGACCTC
CTCTATCCTTCCTGACGCAGCAGCCGCAGACGACGCCGATGCCACCATTC
CCACGGTCCGCATGTACAAGTCTAATGAACTAGATGCTGTAGCCACTCCG
TCTGTCCACATACTTCAAAGTGCCGACACCGATGTGCCCATTGCCGAGTA
CTTGGAGGGTGGACAATTGTCTATAGACAGCATCCCCACGCGCATGGTTG
AAATCCCCTGTCCCTTTTCCCACAGTGGCCCACGTCAATACGAGACGGTA
AAGGTCGCTGTCATCCAAGACACGACCTGCGCCAACTACTGGTGCTCCCG
CCTCGCTCACGTACTGCGAAAGGAATCCGGCCCCGACGGTGGCGGCGGTG
CTGTGGGGCTCGATTTGGAATGGAAGCCTACCTTTCGTGCACGGCAAGCT
GCCTCCCGCGCCGCCGTATTACAGTTGTCCGGGCCTGGACTCTGCCTGGT
CATCCAGCTACAGCAGCTCAGGCACGTTCCGCGGCAGCTTCGTCAGATTT
TGGCGGATCCAACGCTGTTAAAAGTAGGGGTATCAGTCGATGATGATTTG
GCCAAACTTCGGCGTGACTGGGGTATGGTTTCCAGTGGGTACGTGGACGT
CGGACGGGTAGGAGGACGGCTTTTCTTCCATGACAACCCATTCCGCACCA
TGTCCGTGCAAAACATGGCGGCCTCGTTGTGGGGTATCGATTTACCCAAG
TCGGACGCGATTCGATTGGGGAATTGGGAGCACCCGGAGCTGTCGACGAA
GCAAGTAGAGTACGCGGCCTTGGACGCTATGGCGGGACGGGCGATTTACC
AAGAGTTTTACCGGAGGGGCCTGCTGGACAGGGGCATGCTGAAGGAGATG
ATGGAAACGTGGTTGATTTCTTCAGAGGACGACAATAGAAAGCGTGCGAG
GAGTTTGGCGTTGGAATCGGATGTGCTTCGGAGGTTGTACACGCGCCTCC
AGGGCGAGTCGCCTTCCAAGTCCCGGTCCTCCGCGGCGTCACGCTCTTCG
AGTTCTGTGAAGCCTAGGAAGAGGTCATCAGGACCCCAGGGAAAGAGCAG
AAATGTTGTCAGTAGGAATAGTGGCAGTAGTAGTATTAGAAGTAGTAGTA
ATAGTAGTAATAGTAATAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGCAGCAGAAGCAGCAAGAGCAGCAGCAACAG
GAGCAGCAGCAAATGTAGAGACGCTCCTGTCATTTCTAGCCAGAGTACCC
CTGAACTTTTGCCCGACATTGCCGTGGCTTACAAAGCACTGAATGGCACG
TGA

Synonyms

Publications