Properties
Property Name | Value |
TranscriptId | 112470 |
Track | FilteredModels2 |
ProteinId | 112384 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_17 | supercontig | scaffold_17:81552..84646 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6780 ID=mRNA_6780|Name=jgi.p|Nanoce1779_2|112384|organism=Nannochloropsis oceanica|type=mRNA|length=3095bp CCCTGCCTCAACCCCATCCCCACAACCACAGTAGAGCCAGTGGAACGATT TGCGCAGGAAACGACCGTAGCGGCAAGCCACGCCTAGGATTAGGAGACAA GCGGAGGACCTGAGGTTCATCACCGCTCTGGCTAGTCACACCTTCACCGT TCGTGTTGACGACATAAACTTTGCGCCTTCTGGGGAAGCAGTCGCGAGAG CCCCTCAAACACGCCGCATTGCGGCGACTATCTCTATCTTTCGTCACCGC CGTCCTATCACGGCCCACCGAACTTTCCATCAGAACCATGTCCAAAACAT CCTGTCCGGTCTTCCGGCCGACGATGGACGAGTTTAAGAATTTCTCTGCG TACATTGATAAGATCGACAGCAAGATCGGCGATGCTGGCCTTTGCAAAAT CATTCCTCCCGAGGGGTGGTACACTCCTCCGACGGAGGCCGAGTTGGAGG AAATGTTGGAGGAGAGGCAGCTGCTGATTCCGCCCATCAAGCAGTGCGTC TCGGGCCTGCGCGGTGTTTACCAGCTCGGGCTCATGGACAGTAAGAAGCT GAGCGTCAGGGATTTCCGAGCGCTTGCGCACAAAAATGAGCCGGATTATG AGACGTCGTACGAGGAGCGGGAACGTTTGTTCTGGAGGAGCATGGGGCCC GTGACCCCGCCCCCTCTGTACGGCGCGGACATGAGCGGGTCACTCTTCCG GGACGGGGCAAGTGGCTGGAATCTGGCAGAACTTGACAACATGATCAAAT TGCTGCCGTCCAATTTGCCGGGGATTACGACTGCGATGCTTTATTTCGGA ATGTGGCGGGCCATGTTTGCCTTCCACACCGAGGATATGAACCTCTATAG CATCAACTACCTCCATGCCGGCCGCCCCAAGAGTTGGTATTCCATCCCCC CTGCCTCTCAGAAGCGGTTCGAGAGCATGGCGCAGTCATTGGATCCACAG GGATTCCGTGGCTGTTCTGAATTTTTGCGACACAAGACCAGTATATTTTC GCCCAAGGTATTGCGGGAATCCGGTATCCCATTCCACACCCTCGTCCAGG AGCCCGGTGAATACGTGATTACCTTTCCTGCCTCCTATCACGCCGGATTC AACCACGGTTTCAATGTTGCAGAAGCGACGAATTTCACGACAGAACGCTG GTTGAGTAAGGGAAGGGAGGCCAAGGTTTGTCGATGCCAGCCTTATTCTG TGCACATTAATATGGACGACTTTGCCGCCAAGCTCGAAGCCAAGCGTGCC GCTGACCGGGCGAAGGTCGAGGCATTGCCTAGCAAGACAGGTAAGATTGA ACGTAAGAGGATTCTGAAGCGCCTGGGGCACACCGGATGGCTGGCCTGGC ACGAGCAAGAGGAGGACGCAAGGGTGCAGGAGAAGATGAGGTCGCAGAAG GAGCGACAGCGCCTGCAGCGGGAGCGGACATACTTGCGACGCAGGGCGAA ATTGAGGGAGTTGCAGGAGGGCACGTATGACCCGGCTGTAGGGGCCAAGC GGCGGGCGGGCGGCCCTGACGATTATACGTTAGGAGGGTCGGAGGAGGAG ACGGAGGGGAGCGTGGAGGAGGAAGGGAGCGGACATTCTATTGAAGAGGA GGAGGAGAGAAGAGAGGGGGGGGAGGAGGTTTTGGCGGAGCAGGAGCTGT GGGACTTTCGATGTTCGTGTGGTGAGATTTGCAGTAGCGAGACACCGGTG GCGAACTGGCCAAAGGGGGCCATGTTTCAGTGCACGGGCTGCTTAACCTG GTCGCACACCCGCTGTCTCTATAGCAAGGATGTGGCGCCTCGGAAGGCGT TTTGTGCGGGATGTCATCAGGTGCTGAAGACGTTGGAAGGTTTGGGTGCG AACTGGCATACTGGGCGTCAGATCGACGTTCGGTCGCGGGTGGTTGTGTG TCGGGGGCCGCGGGGGCTTGACGAGGGAACGGTAACCATGCTCGGGGAGG GGATGGCGCGTGTTTATTTTAAAGGTCTCAGACAGCCTAAGAAGAAGAGA AAAGGAGGACGGAGAGTGGCCGGAGAACTGGAAGATGTGAGACCGACGAA GGAGCAGGCGGCTCCGGTAGAGGAGTGGATCAACATCACATCCAACCGCT TTTTGAGTAGAGAGAGGATCAAGACAGCCCTCGCTGCCTTCAACTTCCAG TCAGCTGAGGCGAGGGAATCTGGCGTTAGGTTGGAAATGAGGAAGAAGGC TCGTTTAGAGCAGCAACGACTGCAGTGTGAAGAGCAGGGGCATTACCGCC ATCGTCAACACAGCTCTCCTTCGACGTCCTCCTCCGCTGCTGCTGCTGCT GCTGCTGCTGCTTTTGCAAGCACGCCCCACCACTCAAGCGGAATGTGCGT GACCTTCTCTGCCTCTGATCGCGGCACCATGGGCCGAGCAGCAGCAGCAG CAGCACCAGCACCAGCACCGACGCTGGCGGGTGGTTTTGCTTATCCTTCC TCCCTGATGCGGGGCGTGCCTTTGCCTAACGCCGATGCAGCTGTTCGGCA TGCGAAATTTCAGAAGGACCTCGCGCGGAGCAAGAAGGCCTTTCGAGGCC TCTTCTCCCGGACGCAGAAGGTGGAGTCGGCGCTGGCTGGGGGTTATCAA CCGTATCGTGGCCCGCAGGGGCAGGAAATCTCAGTATTTGATGGGAAGTG GTCGGATGACGAGGAAGAGGAGGATGAGGGAGGTAAAGAGGCTGGAGCTG TGAGTGAGCGCGGGGACAACTCTGTGGTGATGGCAAAGGCTGACGACACG AAAGGCTGCACTAATGAGGGCAAGGATCAACAGACGACGGACCCCTCCAA GCCGGCTGCAGCCCCTACATTGATCCGGTCAACTGCCTCCTCCTCCTACT ATTACCCTCCCCCCGCTGCCTCCCATTCTTCATCCTCCGCCTACCAATAT CTCCAGCAACAACACCAGCAGCGGACGCAGGCAGCCAATGTCCAAGGCCA ACAGTATGCAACATCCACCAAGTCTTCATATTTCTCTTCCCCTTCTTCCA CATTCTCGTCCATGCCCTCGGCGTCGGGGGCGGTCGCGCCTGCGGCTGAG GCGAAAGAGTTGAAGTAGAGGGTAGCTGCGGGGTCTGCTGGGAAG back to topprotein sequence of jgi.p|Nanoce1779_2|112384 >mRNA_6780-protein ID=mRNA_6780-protein|Name=jgi.p|Nanoce1779_2|112384|organism=Nannochloropsis oceanica|type=polypeptide|length=927bp MSKTSCPVFRPTMDEFKNFSAYIDKIDSKIGDAGLCKIIPPEGWYTPPTE AELEEMLEERQLLIPPIKQCVSGLRGVYQLGLMDSKKLSVRDFRALAHKN EPDYETSYEERERLFWRSMGPVTPPPLYGADMSGSLFRDGASGWNLAELD NMIKLLPSNLPGITTAMLYFGMWRAMFAFHTEDMNLYSINYLHAGRPKSW YSIPPASQKRFESMAQSLDPQGFRGCSEFLRHKTSIFSPKVLRESGIPFH TLVQEPGEYVITFPASYHAGFNHGFNVAEATNFTTERWLSKGREAKVCRC QPYSVHINMDDFAAKLEAKRAADRAKVEALPSKTGKIERKRILKRLGHTG WLAWHEQEEDARVQEKMRSQKERQRLQRERTYLRRRAKLRELQEGTYDPA VGAKRRAGGPDDYTLGGSEEETEGSVEEEGSGHSIEEEEERREGGEEVLA EQELWDFRCSCGEICSSETPVANWPKGAMFQCTGCLTWSHTRCLYSKDVA PRKAFCAGCHQVLKTLEGLGANWHTGRQIDVRSRVVVCRGPRGLDEGTVT MLGEGMARVYFKGLRQPKKKRKGGRRVAGELEDVRPTKEQAAPVEEWINI TSNRFLSRERIKTALAAFNFQSAEARESGVRLEMRKKARLEQQRLQCEEQ GHYRHRQHSSPSTSSSAAAAAAAAAFASTPHHSSGMCVTFSASDRGTMGR AAAAAAPAPAPTLAGGFAYPSSLMRGVPLPNADAAVRHAKFQKDLARSKK AFRGLFSRTQKVESALAGGYQPYRGPQGQEISVFDGKWSDDEEEEDEGGK EAGAVSERGDNSVVMAKADDTKGCTNEGKDQQTTDPSKPAAAPTLIRSTA SSSYYYPPPAASHSSSSAYQYLQQQHQQRTQAANVQGQQYATSTKSSYFS SPSSTFSSMPSASGAVAPAAEAKELK* back to topmRNA from alignment at scaffold_17:81552..84646- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6780 ID=mRNA_6780|Name=jgi.p|Nanoce1779_2|112384|organism=Nannochloropsis oceanica|type=mRNA|length=3095bp|location=Sequence derived from alignment at scaffold_17:81552..84646- (Nannochloropsis oceanica) CCCTGCCTCAACCCCATCCCCACAACCACAGTAGAGCCAGTGGAACGATT
TGCGCAGGAAACGACCGTAGCGGCAAGCCACGCCTAGGATTAGGAGACAA
GCGGAGGACCTGAGGTTCATCACCGCTCTGGCTAGTCACACCTTCACCGT
TCGTGTTGACGACATAAACTTTGCGCCTTCTGGGGAAGCAGTCGCGAGAG
CCCCTCAAACACGCCGCATTGCGGCGACTATCTCTATCTTTCGTCACCGC
CGTCCTATCACGGCCCACCGAACTTTCCATCAGAACCATGTCCAAAACAT
CCTGTCCGGTCTTCCGGCCGACGATGGACGAGTTTAAGAATTTCTCTGCG
TACATTGATAAGATCGACAGCAAGATCGGCGATGCTGGCCTTTGCAAAAT
CATTCCTCCCGAGGGGTGGTACACTCCTCCGACGGAGGCCGAGTTGGAGG
AAATGTTGGAGGAGAGGCAGCTGCTGATTCCGCCCATCAAGCAGTGCGTC
TCGGGCCTGCGCGGTGTTTACCAGCTCGGGCTCATGGACAGTAAGAAGCT
GAGCGTCAGGGATTTCCGAGCGCTTGCGCACAAAAATGAGCCGGATTATG
AGACGTCGTACGAGGAGCGGGAACGTTTGTTCTGGAGGAGCATGGGGCCC
GTGACCCCGCCCCCTCTGTACGGCGCGGACATGAGCGGGTCACTCTTCCG
GGACGGGGCAAGTGGCTGGAATCTGGCAGAACTTGACAACATGATCAAAT
TGCTGCCGTCCAATTTGCCGGGGATTACGACTGCGATGCTTTATTTCGGA
ATGTGGCGGGCCATGTTTGCCTTCCACACCGAGGATATGAACCTCTATAG
CATCAACTACCTCCATGCCGGCCGCCCCAAGAGTTGGTATTCCATCCCCC
CTGCCTCTCAGAAGCGGTTCGAGAGCATGGCGCAGTCATTGGATCCACAG
GGATTCCGTGGCTGTTCTGAATTTTTGCGACACAAGACCAGTATATTTTC
GCCCAAGGTATTGCGGGAATCCGGTATCCCATTCCACACCCTCGTCCAGG
AGCCCGGTGAATACGTGATTACCTTTCCTGCCTCCTATCACGCCGGATTC
AACCACGGTTTCAATGTTGCAGAAGCGACGAATTTCACGACAGAACGCTG
GTTGAGTAAGGGAAGGGAGGCCAAGGTTTGTCGATGCCAGCCTTATTCTG
TGCACATTAATATGGACGACTTTGCCGCCAAGCTCGAAGCCAAGCGTGCC
GCTGACCGGGCGAAGGTCGAGGCATTGCCTAGCAAGACAGGTAAGATTGA
ACGTAAGAGGATTCTGAAGCGCCTGGGGCACACCGGATGGCTGGCCTGGC
ACGAGCAAGAGGAGGACGCAAGGGTGCAGGAGAAGATGAGGTCGCAGAAG
GAGCGACAGCGCCTGCAGCGGGAGCGGACATACTTGCGACGCAGGGCGAA
ATTGAGGGAGTTGCAGGAGGGCACGTATGACCCGGCTGTAGGGGCCAAGC
GGCGGGCGGGCGGCCCTGACGATTATACGTTAGGAGGGTCGGAGGAGGAG
ACGGAGGGGAGCGTGGAGGAGGAAGGGAGCGGACATTCTATTGAAGAGGA
GGAGGAGAGAAGAGAGGGGGGGGAGGAGGTTTTGGCGGAGCAGGAGCTGT
GGGACTTTCGATGTTCGTGTGGTGAGATTTGCAGTAGCGAGACACCGGTG
GCGAACTGGCCAAAGGGGGCCATGTTTCAGTGCACGGGCTGCTTAACCTG
GTCGCACACCCGCTGTCTCTATAGCAAGGATGTGGCGCCTCGGAAGGCGT
TTTGTGCGGGATGTCATCAGGTGCTGAAGACGTTGGAAGGTTTGGGTGCG
AACTGGCATACTGGGCGTCAGATCGACGTTCGGTCGCGGGTGGTTGTGTG
TCGGGGGCCGCGGGGGCTTGACGAGGGAACGGTAACCATGCTCGGGGAGG
GGATGGCGCGTGTTTATTTTAAAGGTCTCAGACAGCCTAAGAAGAAGAGA
AAAGGAGGACGGAGAGTGGCCGGAGAACTGGAAGATGTGAGACCGACGAA
GGAGCAGGCGGCTCCGGTAGAGGAGTGGATCAACATCACATCCAACCGCT
TTTTGAGTAGAGAGAGGATCAAGACAGCCCTCGCTGCCTTCAACTTCCAG
TCAGCTGAGGCGAGGGAATCTGGCGTTAGGTTGGAAATGAGGAAGAAGGC
TCGTTTAGAGCAGCAACGACTGCAGTGTGAAGAGCAGGGGCATTACCGCC
ATCGTCAACACAGCTCTCCTTCGACGTCCTCCTCCGCTGCTGCTGCTGCT
GCTGCTGCTGCTTTTGCAAGCACGCCCCACCACTCAAGCGGAATGTGCGT
GACCTTCTCTGCCTCTGATCGCGGCACCATGGGCCGAGCAGCAGCAGCAG
CAGCACCAGCACCAGCACCGACGCTGGCGGGTGGTTTTGCTTATCCTTCC
TCCCTGATGCGGGGCGTGCCTTTGCCTAACGCCGATGCAGCTGTTCGGCA
TGCGAAATTTCAGAAGGACCTCGCGCGGAGCAAGAAGGCCTTTCGAGGCC
TCTTCTCCCGGACGCAGAAGGTGGAGTCGGCGCTGGCTGGGGGTTATCAA
CCGTATCGTGGCCCGCAGGGGCAGGAAATCTCAGTATTTGATGGGAAGTG
GTCGGATGACGAGGAAGAGGAGGATGAGGGAGGTAAAGAGGCTGGAGCTG
TGAGTGAGCGCGGGGACAACTCTGTGGTGATGGCAAAGGCTGACGACACG
AAAGGCTGCACTAATGAGGGCAAGGATCAACAGACGACGGACCCCTCCAA
GCCGGCTGCAGCCCCTACATTGATCCGGTCAACTGCCTCCTCCTCCTACT
ATTACCCTCCCCCCGCTGCCTCCCATTCTTCATCCTCCGCCTACCAATAT
CTCCAGCAACAACACCAGCAGCGGACGCAGGCAGCCAATGTCCAAGGCCA
ACAGTATGCAACATCCACCAAGTCTTCATATTTCTCTTCCCCTTCTTCCA
CATTCTCGTCCATGCCCTCGGCGTCGGGGGCGGTCGCGCCTGCGGCTGAG
GCGAAAGAGTTGAAGTAGAGGGTAGCTGCGGGGTCTGCTGGGAAG back to topCoding sequence (CDS) from alignment at scaffold_17:81552..84646- >mRNA_6780 ID=mRNA_6780|Name=jgi.p|Nanoce1779_2|112384|organism=Nannochloropsis oceanica|type=CDS|length=2781bp|location=Sequence derived from alignment at scaffold_17:81552..84646- (Nannochloropsis oceanica) ATGTCCAAAACATCCTGTCCGGTCTTCCGGCCGACGATGGACGAGTTTAA GAATTTCTCTGCGTACATTGATAAGATCGACAGCAAGATCGGCGATGCTG GCCTTTGCAAAATCATTCCTCCCGAGGGGTGGTACACTCCTCCGACGGAG GCCGAGTTGGAGGAAATGTTGGAGGAGAGGCAGCTGCTGATTCCGCCCAT CAAGCAGTGCGTCTCGGGCCTGCGCGGTGTTTACCAGCTCGGGCTCATGG ACAGTAAGAAGCTGAGCGTCAGGGATTTCCGAGCGCTTGCGCACAAAAAT GAGCCGGATTATGAGACGTCGTACGAGGAGCGGGAACGTTTGTTCTGGAG GAGCATGGGGCCCGTGACCCCGCCCCCTCTGTACGGCGCGGACATGAGCG GGTCACTCTTCCGGGACGGGGCAAGTGGCTGGAATCTGGCAGAACTTGAC AACATGATCAAATTGCTGCCGTCCAATTTGCCGGGGATTACGACTGCGAT GCTTTATTTCGGAATGTGGCGGGCCATGTTTGCCTTCCACACCGAGGATA TGAACCTCTATAGCATCAACTACCTCCATGCCGGCCGCCCCAAGAGTTGG TATTCCATCCCCCCTGCCTCTCAGAAGCGGTTCGAGAGCATGGCGCAGTC ATTGGATCCACAGGGATTCCGTGGCTGTTCTGAATTTTTGCGACACAAGA CCAGTATATTTTCGCCCAAGGTATTGCGGGAATCCGGTATCCCATTCCAC ACCCTCGTCCAGGAGCCCGGTGAATACGTGATTACCTTTCCTGCCTCCTA TCACGCCGGATTCAACCACGGTTTCAATGTTGCAGAAGCGACGAATTTCA CGACAGAACGCTGGTTGAGTAAGGGAAGGGAGGCCAAGGTTTGTCGATGC CAGCCTTATTCTGTGCACATTAATATGGACGACTTTGCCGCCAAGCTCGA AGCCAAGCGTGCCGCTGACCGGGCGAAGGTCGAGGCATTGCCTAGCAAGA CAGGTAAGATTGAACGTAAGAGGATTCTGAAGCGCCTGGGGCACACCGGA TGGCTGGCCTGGCACGAGCAAGAGGAGGACGCAAGGGTGCAGGAGAAGAT GAGGTCGCAGAAGGAGCGACAGCGCCTGCAGCGGGAGCGGACATACTTGC GACGCAGGGCGAAATTGAGGGAGTTGCAGGAGGGCACGTATGACCCGGCT GTAGGGGCCAAGCGGCGGGCGGGCGGCCCTGACGATTATACGTTAGGAGG GTCGGAGGAGGAGACGGAGGGGAGCGTGGAGGAGGAAGGGAGCGGACATT CTATTGAAGAGGAGGAGGAGAGAAGAGAGGGGGGGGAGGAGGTTTTGGCG GAGCAGGAGCTGTGGGACTTTCGATGTTCGTGTGGTGAGATTTGCAGTAG CGAGACACCGGTGGCGAACTGGCCAAAGGGGGCCATGTTTCAGTGCACGG GCTGCTTAACCTGGTCGCACACCCGCTGTCTCTATAGCAAGGATGTGGCG CCTCGGAAGGCGTTTTGTGCGGGATGTCATCAGGTGCTGAAGACGTTGGA AGGTTTGGGTGCGAACTGGCATACTGGGCGTCAGATCGACGTTCGGTCGC GGGTGGTTGTGTGTCGGGGGCCGCGGGGGCTTGACGAGGGAACGGTAACC ATGCTCGGGGAGGGGATGGCGCGTGTTTATTTTAAAGGTCTCAGACAGCC TAAGAAGAAGAGAAAAGGAGGACGGAGAGTGGCCGGAGAACTGGAAGATG TGAGACCGACGAAGGAGCAGGCGGCTCCGGTAGAGGAGTGGATCAACATC ACATCCAACCGCTTTTTGAGTAGAGAGAGGATCAAGACAGCCCTCGCTGC CTTCAACTTCCAGTCAGCTGAGGCGAGGGAATCTGGCGTTAGGTTGGAAA TGAGGAAGAAGGCTCGTTTAGAGCAGCAACGACTGCAGTGTGAAGAGCAG GGGCATTACCGCCATCGTCAACACAGCTCTCCTTCGACGTCCTCCTCCGC TGCTGCTGCTGCTGCTGCTGCTGCTTTTGCAAGCACGCCCCACCACTCAA GCGGAATGTGCGTGACCTTCTCTGCCTCTGATCGCGGCACCATGGGCCGA GCAGCAGCAGCAGCAGCACCAGCACCAGCACCGACGCTGGCGGGTGGTTT TGCTTATCCTTCCTCCCTGATGCGGGGCGTGCCTTTGCCTAACGCCGATG CAGCTGTTCGGCATGCGAAATTTCAGAAGGACCTCGCGCGGAGCAAGAAG GCCTTTCGAGGCCTCTTCTCCCGGACGCAGAAGGTGGAGTCGGCGCTGGC TGGGGGTTATCAACCGTATCGTGGCCCGCAGGGGCAGGAAATCTCAGTAT TTGATGGGAAGTGGTCGGATGACGAGGAAGAGGAGGATGAGGGAGGTAAA GAGGCTGGAGCTGTGAGTGAGCGCGGGGACAACTCTGTGGTGATGGCAAA GGCTGACGACACGAAAGGCTGCACTAATGAGGGCAAGGATCAACAGACGA CGGACCCCTCCAAGCCGGCTGCAGCCCCTACATTGATCCGGTCAACTGCC TCCTCCTCCTACTATTACCCTCCCCCCGCTGCCTCCCATTCTTCATCCTC CGCCTACCAATATCTCCAGCAACAACACCAGCAGCGGACGCAGGCAGCCA ATGTCCAAGGCCAACAGTATGCAACATCCACCAAGTCTTCATATTTCTCT TCCCCTTCTTCCACATTCTCGTCCATGCCCTCGGCGTCGGGGGCGGTCGC GCCTGCGGCTGAGGCGAAAGAGTTGAAGTAG back to top
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