jgi.p|Nanoce1779_2|596293, mRNA_6779 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596293
Unique Name	mRNA_6779
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1537
Alignment location	scaffold_17:79335..81116 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596379
Track	FilteredModels2
ProteinId	596293

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:79335..81116 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596293	gene_6779	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596293	mRNA_6779-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6779	CDS_6779	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:79335..81116+
coding sequence from alignment at scaffold_17:79335..81116+

mRNA sequence

>mRNA_6779 ID=mRNA_6779|Name=jgi.p|Nanoce1779_2|596293|organism=Nannochloropsis oceanica|type=mRNA|length=1537bp
ACAGTCAGCCGAAGACGGCATTATACCCGCAATGTTTAGACGGGTGTCCA
GCTCCCGGGAGGTGTCCGAGAACAGCAATGGAAGGGGAATAGACAAGCGG
GCGATTGGGGCCCTCGTGGTGGAGTTTGCCTTGACCGCCCTGGGCTACTA
CATATTGTACCAGTCGACCAAGGGCCTTATCGGTATGATTGATCCCACTA
AGAAGGACAAGGACTCCGTGGCGCAGACAAAAGAAGCCCTGGCCAAGAAG
CTGAACCGGCCTGACATAGCCCGCATGGACCTGACGGCCTACGAACGCAT
GATTGCCGAGGAGGTATTAGACCCAGACCAACTGGATGGAGGTTTCGACA
CCATAGGTGGGCTCGAGCAGCAAAAACGAGAAATTTTCGAATTAGCCGTC
TTGCCGCTGAAGCGCCCCGACCTCTTCAACAAGCGCGGCCGGCTCTTGTC
ATCACCAAAAGGTCTGTTGTTCTACGGGGCGCCGGGGACGGGAAAGACGA
TGCTGGCCAAGGCAATTGCCCGGGAATCGGGCGCGGCCTTTATCAACCTA
CGGATGAGCACCCTGATGAACAAGTACTTTGGAGAGTCCAACAAATTGGT
GGCTGCCGTCTTCTCACTCGCTTACAAGCTGGCCCCGTCCATCATCTTCA
TAGATGAAATCGAATCTTTTCTCCGAGCCCGGGGAGGGAATGACGAGGCA
CCTTGGATCTCACTTAAGGCTGAATTCATGACGTTATGGGATGGCGTTCT
TACCGACAGCGCTGTCCCTATCATGGTCCTAGGGGCTAGCAACCGACCTT
ATGATCTCGACCCTGCGATTCTCCGTCGCTTGCCCCGTCAGTTCGAGATC
CCGTTGCCGGGGCCCTCGGAACGTGCTCACATCTTGCAGTTGCTATTGAA
AGAGGAGCACATCGACCTGCAATCTGTCAAGGTGGAGCGGCTGGCGGCGG
ATACGGATGGGTACTCCGGAAGTGACTTGAAGGAGATGTGCCGTGCGGCC
GTGATGATCCCGATCCGGGACGTGATGCCCATGCCAGCAAATGGAAGTTT
AAACACGCTTGATGTGGAGAGCATACAATCAGCAGATTTCCGAATGGTCA
AGATGGCGGACTTCCACGTAGCCATGAAGAGGGTCAAGCCGACGGGACAC
GCAGCGCAGGATTACCAGCAGAGGGAAGGGGCGCAGGCCGTGAATACCGC
GAGAATGACACCAGCTTTCATGAATGCCGCCTTATCGATGTTTTTGCACA
GTGTGATGCAGGGAGGAGGGGGCCAGGCACCACAGGGGCCACCTGGGTCA
GCGAATGGGCATGATGGGAATAATGGATGGCCGAACGGGACGCGGTGAGA
AGAGAGGAAAGGAGATAGAGTAGAGGATAAAAGAAAACAGAGACTTTGAG
TTCCTCCTGTGTTGATAAAAAAAGCCATCAAAATGGACCAAATTCCAAGT
GAGTGAGTCAAGAAATGGTAAGGCCCAAAGAAGCGGCGGGGGCAACAGCA
AAAGCCGCCAGAAAACGAAAGCCACACAACTCACAAC

protein sequence of jgi.p|Nanoce1779_2|596293

>mRNA_6779-protein ID=mRNA_6779-protein|Name=jgi.p|Nanoce1779_2|596293|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MFRRVSSSREVSENSNGRGIDKRAIGALVVEFALTALGYYILYQSTKGLI
GMIDPTKKDKDSVAQTKEALAKKLNRPDIARMDLTAYERMIAEEVLDPDQ
LDGGFDTIGGLEQQKREIFELAVLPLKRPDLFNKRGRLLSSPKGLLFYGA
PGTGKTMLAKAIARESGAAFINLRMSTLMNKYFGESNKLVAAVFSLAYKL
APSIIFIDEIESFLRARGGNDEAPWISLKAEFMTLWDGVLTDSAVPIMVL
GASNRPYDLDPAILRRLPRQFEIPLPGPSERAHILQLLLKEEHIDLQSVK
VERLAADTDGYSGSDLKEMCRAAVMIPIRDVMPMPANGSLNTLDVESIQS
ADFRMVKMADFHVAMKRVKPTGHAAQDYQQREGAQAVNTARMTPAFMNAA
LSMFLHSVMQGGGGQAPQGPPGSANGHDGNNGWPNGTR*

mRNA from alignment at scaffold_17:79335..81116+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6779 ID=mRNA_6779|Name=jgi.p|Nanoce1779_2|596293|organism=Nannochloropsis oceanica|type=mRNA|length=1782bp|location=Sequence derived from alignment at scaffold_17:79335..81116+ (Nannochloropsis oceanica)
ACAGTCAGCCGAAGACGGCATTATACCCGCAATGTTTAGACGGGTGTCCA
GCTCCCGGGAGGTGTCCGAGAACAGCAATGGAAGGGGAATAGACAAGCGG
GCGATTGGGGCCCTCGTGGTGGAGTTTGCCTTGACCGCCCTGGGCTACTA
CATATTGTACCAGTCGACCAAGGGCCTTATCGGTATGATTGATCCCACTA
AGAAGGACAAGGACTCCGTGGCGCAGGTAGGGCGCAGGGTTCGGTCGAAG
GGGTTCAAAACTTGCCCTAACCCTAACTCTAACAGCTTAACAGCTTTTAG
TGCGAATGTAGCGACTCCTTTTACCCACATACGGTAGAGTACGCAGGCGC
CTCTCTCCTTCACCCACGAGGGATCTGGTTGTCACAAATGAATAGCTTTA
CGTATTCCCACCTCTTGGTCTTCTCCAGTCCCTCGTCATGCCACACTCTT
CTTATCACTCCACGCGCACAGACAAAAGAAGCCCTGGCCAAGAAGCTGAA
CCGGCCTGACATAGCCCGCATGGACCTGACGGCCTACGAACGCATGATTG
CCGAGGAGGTATTAGACCCAGACCAACTGGATGGAGGTTTCGACACCATA
GGTGGGCTCGAGCAGCAAAAACGAGAAATTTTCGAATTAGCCGTCTTGCC
GCTGAAGCGCCCCGACCTCTTCAACAAGCGCGGCCGGCTCTTGTCATCAC
CAAAAGGTCTGTTGTTCTACGGGGCGCCGGGGACGGGAAAGACGATGCTG
GCCAAGGCAATTGCCCGGGAATCGGGCGCGGCCTTTATCAACCTACGGAT
GAGCACCCTGATGAACAAGTACTTTGGAGAGTCCAACAAATTGGTGGCTG
CCGTCTTCTCACTCGCTTACAAGCTGGCCCCGTCCATCATCTTCATAGAT
GAAATCGAATCTTTTCTCCGAGCCCGGGGAGGGAATGACGAGGCACCTTG
GATCTCACTTAAGGCTGAATTCATGACGTTATGGGATGGCGTTCTTACCG
ACAGCGCTGTCCCTATCATGGTCCTAGGGGCTAGCAACCGACCTTATGAT
CTCGACCCTGCGATTCTCCGTCGCTTGCCCCGTCAGTTCGAGATCCCGTT
GCCGGGGCCCTCGGAACGTGCTCACATCTTGCAGTTGCTATTGAAAGAGG
AGCACATCGACCTGCAATCTGTCAAGGTGGAGCGGCTGGCGGCGGATACG
GATGGGTACTCCGGAAGTGACTTGAAGGAGATGTGCCGTGCGGCCGTGAT
GATCCCGATCCGGGACGTGATGCCCATGCCAGCAAATGGAAGTTTAAACA
CGCTTGATGTGGAGAGCATACAATCAGCAGATTTCCGAATGGTCAAGATG
GCGGACTTCCACGTAGCCATGAAGAGGGTCAAGCCGACGGGACACGCAGC
GCAGGATTACCAGCAGAGGGAAGGGGCGCAGGCCGTGAATACCGCGAGAA
TGACACCAGCTTTCATGAATGCCGCCTTATCGATGTTTTTGCACAGTGTG
ATGCAGGGAGGAGGGGGCCAGGCACCACAGGGGCCACCTGGGTCAGCGAA
TGGGCATGATGGGAATAATGGATGGCCGAACGGGACGCGGTGAGAAGAGA
GGAAAGGAGATAGAGTAGAGGATAAAAGAAAACAGAGACTTTGAGTTCCT
CCTGTGTTGATAAAAAAAGCCATCAAAATGGACCAAATTCCAAGTGAGTG
AGTCAAGAAATGGTAAGGCCCAAAGAAGCGGCGGGGGCAACAGCAAAAGC
CGCCAGAAAACGAAAGCCACACAACTCACAAC

Coding sequence (CDS) from alignment at scaffold_17:79335..81116+

>mRNA_6779 ID=mRNA_6779|Name=jgi.p|Nanoce1779_2|596293|organism=Nannochloropsis oceanica|type=CDS|length=2634bp|location=Sequence derived from alignment at scaffold_17:79335..81116+ (Nannochloropsis oceanica)
ATGTTTAGACGGGTGTCCAGCTCCCGGGAGGTGTCCGAGAACAGCAATGG
AAGGGGAATAGACAAGCGGGCGATTGGGGCCCTCGTGGTGGAGTTTGCCT
TGACCGCCCTGGGCTACTACATATTGTACCAGTCGACCAAGGGCCTTATC
GGTATGATTGATCCCACTAAGAAGGACAAGGACTCCGTGGCGCAGACAAA
AGAAGCCCTGGCCAAGAAGCTGAACCGGCCTGACATAGCCCGCATGGACC
TGACGGCCTACGAACGCATGATTGCCGAGGAGGTATTAGACCCAGACCAA
CTGGATGGAGGTTTCGACACCATAGGTGGGCTCGAGCAGCAAAAACGAGA
AATTTTCGAATTAGCCGTCTTGCCGCTGAAGCGCCCCGACCTCTTCAACA
AGCGCGGCCGGCTCTTGTCATCACCAAAAGGTCTGTTGTTCTACGGGGCG
CCGGGGACGGGAAAGACGATGCTGGCCAAGGCAATTGCCCGGGAATCGGG
CGCGGCCTTTATCAACCTACGGATGAGCACCCTGATGAACAAGTACTTTG
GAGAGTCCAACAAATTGGTGGCTGCCGTCTTCTCACTCGCTTACAAGCTG
GCCCCGTCCATCATCTTCATAGATGAAATCGAATCTTTTCTCCGAGCCCG
GGGAGGGAATGACGAGGCACCTTGGATCTCACTTAAGGCTGAATTCATGA
CGTTATGGGATGGCGTTCTTACCGACAGCGCTGTCCCTATCATGGTCCTA
GGGGCTAGCAACCGACCTTATGATCTCGACCCTGCGATTCTCCGTCGCTT
GCCCCGTCAGTTCGAGATCCCGTTGCCGGGGCCCTCGGAACGTGCTCACA
TCTTGCAGTTGCTATTGAAAGAGGAGCACATCGACCTGCAATCTGTCAAG
GTGGAGCGGCTGGCGGCGGATACGGATGGGTACTCCGGAAGTGACTTGAA
GGAGATGTGCCGTGCGGCCGTGATGATCCCGATCCGGGACGTGATGCCCA
TGCCAGCAAATGGAAGTTTAAACACGCTTGATGTGGAGAGCATACAATCA
GCAGATTTCCGAATGGTCAAGATGGCGGACTTCCACGTAGCCATGAAGAG
GGTCAAGCCGACGGGACACGCAGCGCAGGATTACCAGCAGAGGGAAGGGG
CGCAGGCCGTGAATACCGCGAGAATGACACCAGCTTTCATGAATGCCGCC
TTATCGATGTTTTTGCACAGTGTGATGCAGGGAGGAGGGGGCCAGGCACC
ACAGGGGCCACCTGGGTCAGCGAATGGGCATGATGGGAATAATGGATGGC
CGAACGGGACGCGGTGAATGTTTAGACGGGTGTCCAGCTCCCGGGAGGTG
TCCGAGAACAGCAATGGAAGGGGAATAGACAAGCGGGCGATTGGGGCCCT
CGTGGTGGAGTTTGCCTTGACCGCCCTGGGCTACTACATATTGTACCAGT
CGACCAAGGGCCTTATCGGTATGATTGATCCCACTAAGAAGGACAAGGAC
TCCGTGGCGCAGACAAAAGAAGCCCTGGCCAAGAAGCTGAACCGGCCTGA
CATAGCCCGCATGGACCTGACGGCCTACGAACGCATGATTGCCGAGGAGG
TATTAGACCCAGACCAACTGGATGGAGGTTTCGACACCATAGGTGGGCTC
GAGCAGCAAAAACGAGAAATTTTCGAATTAGCCGTCTTGCCGCTGAAGCG
CCCCGACCTCTTCAACAAGCGCGGCCGGCTCTTGTCATCACCAAAAGGTC
TGTTGTTCTACGGGGCGCCGGGGACGGGAAAGACGATGCTGGCCAAGGCA
ATTGCCCGGGAATCGGGCGCGGCCTTTATCAACCTACGGATGAGCACCCT
GATGAACAAGTACTTTGGAGAGTCCAACAAATTGGTGGCTGCCGTCTTCT
CACTCGCTTACAAGCTGGCCCCGTCCATCATCTTCATAGATGAAATCGAA
TCTTTTCTCCGAGCCCGGGGAGGGAATGACGAGGCACCTTGGATCTCACT
TAAGGCTGAATTCATGACGTTATGGGATGGCGTTCTTACCGACAGCGCTG
TCCCTATCATGGTCCTAGGGGCTAGCAACCGACCTTATGATCTCGACCCT
GCGATTCTCCGTCGCTTGCCCCGTCAGTTCGAGATCCCGTTGCCGGGGCC
CTCGGAACGTGCTCACATCTTGCAGTTGCTATTGAAAGAGGAGCACATCG
ACCTGCAATCTGTCAAGGTGGAGCGGCTGGCGGCGGATACGGATGGGTAC
TCCGGAAGTGACTTGAAGGAGATGTGCCGTGCGGCCGTGATGATCCCGAT
CCGGGACGTGATGCCCATGCCAGCAAATGGAAGTTTAAACACGCTTGATG
TGGAGAGCATACAATCAGCAGATTTCCGAATGGTCAAGATGGCGGACTTC
CACGTAGCCATGAAGAGGGTCAAGCCGACGGGACACGCAGCGCAGGATTA
CCAGCAGAGGGAAGGGGCGCAGGCCGTGAATACCGCGAGAATGACACCAG
CTTTCATGAATGCCGCCTTATCGATGTTTTTGCACAGTGTGATGCAGGGA
GGAGGGGGCCAGGCACCACAGGGGCCACCTGGGTCAGCGAATGGGCATGA
TGGGAATAATGGATGGCCGAACGGGACGCGGTGA

Synonyms

Publications