jgi.p|Nanoce1779_2|596289, mRNA_6777 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596289
Unique NamemRNA_6777
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1242
Alignment locationscaffold_17:74835..76076 -

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Properties
Property NameValue
TranscriptId596375
TrackFilteredModels2
ProteinId596289
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:74835..76076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596289gene_6777Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596289mRNA_6777-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6777CDS_6777Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6777 ID=mRNA_6777|Name=jgi.p|Nanoce1779_2|596289|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp
GGCGGAGGAGCAGGAGGAGGGAAAGGCATCCGAGGCGTGGTTGACCGGAC
TTTCAAGGGTTCGGGGCAGCAACGGAATGGAGGGGGAAAAGAAGGAGGGG
GAGGGCAGGATGGCGACGAGTTGCCCGAGGAGTTGAAGGGATGCGACCCT
TTAATGGTTGAACGGATCGAGTTAGAGATTATCGATAGGGGGCAGCCTGT
AACGTTTGATGACATAGCGGGCCTGGAGTTTGCGAAAAAGACGATCATCG
AGTTGATTGTGTGGCCGATGAAGAATCCCCAGTTATTCCAAGGACTACGG
GCGCTGCCACGCGGACTCTTGTTGTTTGGCCCGCCAGGCACAGGAAAGAC
GCTCATTGCCAAGGCGATCGCGCACCAGTCCGGTGCCACCTTCTTTAACA
TTTCCGCCTCCTCGCTCACCTCCAAATGGATTGGGGAAGGAGAGAAGCTG
GTACGTGTCTTGTTTAAGCTGGCAGCTTATCGCAGTCCGGCCATCATCTT
TATCGATGAGGTCGACTCTCTTCTCTGTCAACGAAGCGCCGATGAGAACG
AGGCCAGTCGTAGGCTTAAGACGGAGTTTCTCGTGCAGCTGGACGGATGC
GGGAGTGCAGCAGCAGCAGCACGTGTCTTGCTGATTGGCGCGACCAATCG
CCCGCAAGAGCTGGACGAGGCTGCAAGGCGTCGTTTTGTGAAAAGATTAT
ACATTGATCTACCTGAAGCTTTGGCCCGACGAAATTTGATAGAAATTCTT
CTCCGGAAGAATAGCCACAACCTCACATCAAGCGAAATCGAGCAAGTTGT
CGCTCAATCAAAAGGCTTCAGTGGCTCTGACGTGCATCAGCTGTGTACAG
AAGCAGCCATGGGACCCATTCGTGACATGACGGCGCGAATCGGCGGAGAC
ATAAGCGCCATTGACTTAAGTGACATCCCTCCCATTTCTTTCTTACATTT
CCGGGAGGCCTTGTCATCGGTCCGGCCCTCGGTGAGCGAGAAAGATTTGG
GTACGTTGTTGGATTGGAACGATGAGTTTGGGACGTACTCAAGGGGGGTT
TGCGGGGCGGGGCAGGCGCAAGAGATGCAAGGTGTAGCGGTGAAGCAGCA
GGACAGGGGAGAGTGAAAATGTGTTTTTGGGAGTGCGAGAAGGCAAATAG
GCTTTGGAGGATGAGAAATGAAGGGAAGAACTGAAGCAAAGGGTTAGGGT
TCAAAATCAACAAAACAAAAAAAAACAAGAAAAATGTGTAGG
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protein sequence of jgi.p|Nanoce1779_2|596289

>mRNA_6777-protein ID=mRNA_6777-protein|Name=jgi.p|Nanoce1779_2|596289|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MVERIELEIIDRGQPVTFDDIAGLEFAKKTIIELIVWPMKNPQLFQGLRA
LPRGLLLFGPPGTGKTLIAKAIAHQSGATFFNISASSLTSKWIGEGEKLV
RVLFKLAAYRSPAIIFIDEVDSLLCQRSADENEASRRLKTEFLVQLDGCG
SAAAAARVLLIGATNRPQELDEAARRRFVKRLYIDLPEALARRNLIEILL
RKNSHNLTSSEIEQVVAQSKGFSGSDVHQLCTEAAMGPIRDMTARIGGDI
SAIDLSDIPPISFLHFREALSSVRPSVSEKDLGTLLDWNDEFGTYSRGVC
GAGQAQEMQGVAVKQQDRGE*
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mRNA from alignment at scaffold_17:74835..76076-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6777 ID=mRNA_6777|Name=jgi.p|Nanoce1779_2|596289|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp|location=Sequence derived from alignment at scaffold_17:74835..76076- (Nannochloropsis oceanica)
GGCGGAGGAGCAGGAGGAGGGAAAGGCATCCGAGGCGTGGTTGACCGGAC
TTTCAAGGGTTCGGGGCAGCAACGGAATGGAGGGGGAAAAGAAGGAGGGG
GAGGGCAGGATGGCGACGAGTTGCCCGAGGAGTTGAAGGGATGCGACCCT
TTAATGGTTGAACGGATCGAGTTAGAGATTATCGATAGGGGGCAGCCTGT
AACGTTTGATGACATAGCGGGCCTGGAGTTTGCGAAAAAGACGATCATCG
AGTTGATTGTGTGGCCGATGAAGAATCCCCAGTTATTCCAAGGACTACGG
GCGCTGCCACGCGGACTCTTGTTGTTTGGCCCGCCAGGCACAGGAAAGAC
GCTCATTGCCAAGGCGATCGCGCACCAGTCCGGTGCCACCTTCTTTAACA
TTTCCGCCTCCTCGCTCACCTCCAAATGGATTGGGGAAGGAGAGAAGCTG
GTACGTGTCTTGTTTAAGCTGGCAGCTTATCGCAGTCCGGCCATCATCTT
TATCGATGAGGTCGACTCTCTTCTCTGTCAACGAAGCGCCGATGAGAACG
AGGCCAGTCGTAGGCTTAAGACGGAGTTTCTCGTGCAGCTGGACGGATGC
GGGAGTGCAGCAGCAGCAGCACGTGTCTTGCTGATTGGCGCGACCAATCG
CCCGCAAGAGCTGGACGAGGCTGCAAGGCGTCGTTTTGTGAAAAGATTAT
ACATTGATCTACCTGAAGCTTTGGCCCGACGAAATTTGATAGAAATTCTT
CTCCGGAAGAATAGCCACAACCTCACATCAAGCGAAATCGAGCAAGTTGT
CGCTCAATCAAAAGGCTTCAGTGGCTCTGACGTGCATCAGCTGTGTACAG
AAGCAGCCATGGGACCCATTCGTGACATGACGGCGCGAATCGGCGGAGAC
ATAAGCGCCATTGACTTAAGTGACATCCCTCCCATTTCTTTCTTACATTT
CCGGGAGGCCTTGTCATCGGTCCGGCCCTCGGTGAGCGAGAAAGATTTGG
GTACGTTGTTGGATTGGAACGATGAGTTTGGGACGTACTCAAGGGGGGTT
TGCGGGGCGGGGCAGGCGCAAGAGATGCAAGGTGTAGCGGTGAAGCAGCA
GGACAGGGGAGAGTGAAAATGTGTTTTTGGGAGTGCGAGAAGGCAAATAG
GCTTTGGAGGATGAGAAATGAAGGGAAGAACTGAAGCAAAGGGTTAGGGT
TCAAAATCAACAAAACAAAAAAAAACAAGAAAAATGTGTAGG
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Coding sequence (CDS) from alignment at scaffold_17:74835..76076-

>mRNA_6777 ID=mRNA_6777|Name=jgi.p|Nanoce1779_2|596289|organism=Nannochloropsis oceanica|type=CDS|length=963bp|location=Sequence derived from alignment at scaffold_17:74835..76076- (Nannochloropsis oceanica)
ATGGTTGAACGGATCGAGTTAGAGATTATCGATAGGGGGCAGCCTGTAAC
GTTTGATGACATAGCGGGCCTGGAGTTTGCGAAAAAGACGATCATCGAGT
TGATTGTGTGGCCGATGAAGAATCCCCAGTTATTCCAAGGACTACGGGCG
CTGCCACGCGGACTCTTGTTGTTTGGCCCGCCAGGCACAGGAAAGACGCT
CATTGCCAAGGCGATCGCGCACCAGTCCGGTGCCACCTTCTTTAACATTT
CCGCCTCCTCGCTCACCTCCAAATGGATTGGGGAAGGAGAGAAGCTGGTA
CGTGTCTTGTTTAAGCTGGCAGCTTATCGCAGTCCGGCCATCATCTTTAT
CGATGAGGTCGACTCTCTTCTCTGTCAACGAAGCGCCGATGAGAACGAGG
CCAGTCGTAGGCTTAAGACGGAGTTTCTCGTGCAGCTGGACGGATGCGGG
AGTGCAGCAGCAGCAGCACGTGTCTTGCTGATTGGCGCGACCAATCGCCC
GCAAGAGCTGGACGAGGCTGCAAGGCGTCGTTTTGTGAAAAGATTATACA
TTGATCTACCTGAAGCTTTGGCCCGACGAAATTTGATAGAAATTCTTCTC
CGGAAGAATAGCCACAACCTCACATCAAGCGAAATCGAGCAAGTTGTCGC
TCAATCAAAAGGCTTCAGTGGCTCTGACGTGCATCAGCTGTGTACAGAAG
CAGCCATGGGACCCATTCGTGACATGACGGCGCGAATCGGCGGAGACATA
AGCGCCATTGACTTAAGTGACATCCCTCCCATTTCTTTCTTACATTTCCG
GGAGGCCTTGTCATCGGTCCGGCCCTCGGTGAGCGAGAAAGATTTGGGTA
CGTTGTTGGATTGGAACGATGAGTTTGGGACGTACTCAAGGGGGGTTTGC
GGGGCGGGGCAGGCGCAAGAGATGCAAGGTGTAGCGGTGAAGCAGCAGGA
CAGGGGAGAGTGA
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Synonyms
Publications