jgi.p|Nanoce1779_2|596282, mRNA_6774 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596282
Unique NamemRNA_6774
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1120
Alignment locationscaffold_17:66358..67605 -

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Properties
Property NameValue
TranscriptId596368
TrackFilteredModels2
ProteinId596282
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:66358..67605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596282gene_6774Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596282mRNA_6774-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6774CDS_6774Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6774 ID=mRNA_6774|Name=jgi.p|Nanoce1779_2|596282|organism=Nannochloropsis oceanica|type=mRNA|length=1120bp
CGTTGGTCAATTTGTTTACGCTGACAATGGACTTTATAGAGGGTTTTGTT
TCCCACACTCAGGGCGAGCTCCGATCACACCAGAGCGTCTTGAAAGAGAT
TTTGGAGGCGGCACAGAATGAGTCTAAGGAAGCTTTAGACGCGACCTTGA
AGCGATTGCGGCCTCAGTTTCGTGAGGACTTTGTCACATACCTCCGAGGC
GAGTACGACCGCGTCTCTACGCCGCCGATGACTGAGGAATCGGTGGTGCT
GGCCAATTTGTTGCAGGCCATCCAGGCACGGGTCCTGGCGGAAGTGGAGG
ATATGATGGGCGCTGATGTTAGCCAGGTTTCTCGGCTTCTGGCATTTTCT
GACGAGAAGCAAGTGGCCACGGCCTTGAGGGGGTCATTTTTAGCAGGCAC
ATTGCAGCCTGCCCAGTTTTTGGAGATGGTAGAGACGGTGCTGAGCGATT
TGGACGAGCGGATGCCGGCCTTGTTGGATGCTGGCACCAAGAACGAGGAG
TTGCGGGAGATGCATCGAAAGCTAAGTTCAATCCGGACATTTACGGCGGA
ATACATGGCGGAGATGCAGTAGTAATTCTTTCTCATGCAGTTTCCTACAA
TCCTAAAATTATCGCGTGCCAAGAGAAGTTTATGATGCCACTTGTGGGCC
TGGAAAGTTACTGGAAATGTAGACAAGGAATTCCGAGGAGTTCCTTTATT
CGACCAAGACGAGATACATAGATGATGGAGACCCCAACTCGGGCACGTAG
GGTGTGAGGCACGCTCCTCGTTGCAGGCACGCAGGAGCGCCACATCTATT
GCCACCCACGACCACTGCCGCTGCTGGCCTCTACCAGGGATCTTGCTGCT
GCTGCCACTGCTGCTACTGGTGCTATCGTTGCTGCTGGTTCTCCTTGTTA
CTTAGGTGGCTGTAAGCCGTCTGTGTGTGGAAGGCTGTAGGGGGATGTTG
GAAGAAAGGACGGCGACGTGTGTTTGTGCAAAAAATGGGAAGGCGAGGAG
TGACAAAACGACAAATGAAAGCACAAAGAAATGTAAGGAGGAAATCTCGC
ATTTTGATTAACCTTAATCATTGTCGTAGGATTGGAGCACTGCTCTTCGT
ATTGTTGTGTATTGTTGTGT
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protein sequence of jgi.p|Nanoce1779_2|596282

>mRNA_6774-protein ID=mRNA_6774-protein|Name=jgi.p|Nanoce1779_2|596282|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MDFIEGFVSHTQGELRSHQSVLKEILEAAQNESKEALDATLKRLRPQFRE
DFVTYLRGEYDRVSTPPMTEESVVLANLLQAIQARVLAEVEDMMGADVSQ
VSRLLAFSDEKQVATALRGSFLAGTLQPAQFLEMVETVLSDLDERMPALL
DAGTKNEELREMHRKLSSIRTFTAEYMAEMQ*
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mRNA from alignment at scaffold_17:66358..67605-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6774 ID=mRNA_6774|Name=jgi.p|Nanoce1779_2|596282|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp|location=Sequence derived from alignment at scaffold_17:66358..67605- (Nannochloropsis oceanica)
CGTTGGTCAATTTGTTTACGCTGACAATGGACTTTATAGAGGGTTTTGTT
TCCCACACTCAGGGCGAGCTCCGATCACACCAGAGCGTCTTGAAAGAGAT
TTTGGAGGCGGCACAGAATGGTACGGATATATATCTTGTAGATGCACTGC
TCTTCGTTTCTCTCCGTGTGACACTTTTCTCTACAAAGTCTCGCCTTCTT
TTGAGCCTCTTTCATCCATATTTTTCTCCCACAACATCCAAAAAACAGAG
TCTAAGGAAGCTTTAGACGCGACCTTGAAGCGATTGCGGCCTCAGTTTCG
TGAGGACTTTGTCACATACCTCCGAGGCGAGTACGACCGCGTCTCTACGC
CGCCGATGACTGAGGAATCGGTGGTGCTGGCCAATTTGTTGCAGGCCATC
CAGGCACGGGTCCTGGCGGAAGTGGAGGATATGATGGGCGCTGATGTTAG
CCAGGTTTCTCGGCTTCTGGCATTTTCTGACGAGAAGCAAGTGGCCACGG
CCTTGAGGGGGTCATTTTTAGCAGGCACATTGCAGCCTGCCCAGTTTTTG
GAGATGGTAGAGACGGTGCTGAGCGATTTGGACGAGCGGATGCCGGCCTT
GTTGGATGCTGGCACCAAGAACGAGGAGTTGCGGGAGATGCATCGAAAGC
TAAGTTCAATCCGGACATTTACGGCGGAATACATGGCGGAGATGCAGTAG
TAATTCTTTCTCATGCAGTTTCCTACAATCCTAAAATTATCGCGTGCCAA
GAGAAGTTTATGATGCCACTTGTGGGCCTGGAAAGTTACTGGAAATGTAG
ACAAGGAATTCCGAGGAGTTCCTTTATTCGACCAAGACGAGATACATAGA
TGATGGAGACCCCAACTCGGGCACGTAGGGTGTGAGGCACGCTCCTCGTT
GCAGGCACGCAGGAGCGCCACATCTATTGCCACCCACGACCACTGCCGCT
GCTGGCCTCTACCAGGGATCTTGCTGCTGCTGCCACTGCTGCTACTGGTG
CTATCGTTGCTGCTGGTTCTCCTTGTTACTTAGGTGGCTGTAAGCCGTCT
GTGTGTGGAAGGCTGTAGGGGGATGTTGGAAGAAAGGACGGCGACGTGTG
TTTGTGCAAAAAATGGGAAGGCGAGGAGTGACAAAACGACAAATGAAAGC
ACAAAGAAATGTAAGGAGGAAATCTCGCATTTTGATTAACCTTAATCATT
GTCGTAGGATTGGAGCACTGCTCTTCGTATTGTTGTGTATTGTTGTGT
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Coding sequence (CDS) from alignment at scaffold_17:66358..67605-

>mRNA_6774 ID=mRNA_6774|Name=jgi.p|Nanoce1779_2|596282|organism=Nannochloropsis oceanica|type=CDS|length=1092bp|location=Sequence derived from alignment at scaffold_17:66358..67605- (Nannochloropsis oceanica)
AGTCTAAGGAAGCTTTAGACGCGACCTTGAAGCGATTGCGGCCTCAGTTT
CGTGAGGACTTTGTCACATACCTCCGAGGCGAGTACGACCGCGTCTCTAC
GCCGCCGATGACTGAGGAATCGGTGGTGCTGGCCAATTTGTTGCAGGCCA
TCCAGGCACGGGTCCTGGCGGAAGTGGAGGATATGATGGGCGCTGATGTT
AGCCAGGTTTCTCGGCTTCTGGCATTTTCTGACGAGAAGCAAGTGGCCAC
GGCCTTGAGGGGGTCATTTTTAGCAGGCACATTGCAGCCTGCCCAGTTTT
TGGAGATGGTAGAGACGGTGCTGAGCGATTTGGACGAGCGGATGCCGGCC
TTGTTGGATGCTGGCACCAAGAACGAGGAGTTGCGGGAGATGCATCGAAA
GCTAAGTTCAATCCGGACATTTACGGCGGAATACATGGCGGAGATGCAGT
AGATGGACTTTATAGAGGGTTTTGTTTCCCACACTCAGGGCGAGCTCCGA
TCACACCAGAGCGTCTTGAAAGAGATTTTGGAGGCGGCACAGAATGAGTC
TAAGGAAGCTTTAGACGCGACCTTGAAGCGATTGCGGCCTCAGTTTCGTG
AGGACTTTGTCACATACCTCCGAGGCGAGTACGACCGCGTCTCTACGCCG
CCGATGACTGAGGAATCGGTGGTGCTGGCCAATTTGTTGCAGGCCATCCA
GGCACGGGTCCTGGCGGAAGTGGAGGATATGATGGGCGCTGATGTTAGCC
AGGTTTCTCGGCTTCTGGCATTTTCTGACGAGAAGCAAGTGGCCACGGCC
TTGAGGGGGTCATTTTTAGCAGGCACATTGCAGCCTGCCCAGTTTTTGGA
GATGGTAGAGACGGTGCTGAGCGATTTGGACGAGCGGATGCCGGCCTTGT
TGGATGCTGGCACCAAGAACGAGGAGTTGCGGGAGATGCATCGAAAGCTA
AGTTCAATCCGGACATTTACGGCGGAATACATGGCGGAGATGCAGTAGAT
GGACTTTATAGAGGGTTTTGTTTCCCACACTCAGGGCGAGCTCCGATCAC
ACCAGAGCGTCTTGAAAGAGATTTTGGAGGCGGCACAGAATG
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Synonyms
Publications