jgi.p|Nanoce1779_2|596279, mRNA_6773 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596279
Unique NamemRNA_6773
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1108
Alignment locationscaffold_17:64952..66201 -

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Properties
Property NameValue
TranscriptId596365
TrackFilteredModels2
ProteinId596279
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:64952..66201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596279gene_6773Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596279mRNA_6773-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6773CDS_6773Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6773 ID=mRNA_6773|Name=jgi.p|Nanoce1779_2|596279|organism=Nannochloropsis oceanica|type=mRNA|length=1108bp
ACAGCAGGCATAATGGCAGGACCCAAGTATCATTGGACGGGTGCAGGGCT
TTTCATAGCTTTGCTTCTACTTCTCGCCGCGTCCTGTCCGCAAGCCTTCC
TCGTCCTTGTTCCATCCCACCGGCGGCACCGACCATCACGGCGCTTTGTG
CTGGATCCGTCCATAGTAAAAGATGTAGTCACGGATGTAGCGCAAAGCGG
TGGCGGTGCCAATGGCCCCCAGCAAGTCGCCGAGGCGATGATTCAGCTGC
TGCAAGGACCGTCTGGGGTGGGTATTTTCGGTTTGGTCGCCTTATCTGTG
AGGCTCTACACGTACTTCACTGTCCAGTCTTATATTGCCAAGCTGTGCAC
GCTCTTTGCAAATAGTGGGACGACAGTCGAGCTACGGTACGGCAACTCCC
TCCGGAACCTCTTCTATTACGAACCAGGTCCAGGGAAGATGGAGCGACTC
ATCGTGCCAACGGGCGACCCAAAGAATATTCAGACGATTGCCGAGGTATG
CGCCCGGCTGAAAGTAGCGGCGAAGGCAACATATGATGTAACAGCACTTC
CCGAGTCATTCGAACAACTGAAGCTGCCCGCTGATAGTGTCGACACTATC
GTCTCAACGTACATGCTGAATAAGAGTAAGCAGCCCCTCGTGACCTTCAC
TAAGGCTATGGAGCTCCTCAGGGATGATGGTATTTTGATTTTCGTCGAAC
CTGTGTGTGGGGACAATGCCCTCTTGAGCTTCGTCCGGAAATACTTTGGA
GCCATACATCGATCCACAGGCGCGTTTGGAGACCCGGGGCTGGACATCAA
GACGATCGTGAATGTGTGGGCAAAGAATATTGGTGAGACAGAGGGTGTTG
AGATCGAGCTAGATGTGGAGGAGCAGGGTTACTTCTTCGACCCACACGTG
GTCGGCGTGATGCAGAAGAAGAGGATTGACCGGGGTCCGGAATACGAGCC
GAGTAATTCAGAAAAACGAAAGCTGGCGCGGAGAAAAGGGATGACGGCGG
GTTCGAGCAAGGGTTTTGGGGGGGGAAGTAAAGCAGAGGGACCGGGGGGC
AAGTAAATATGAGCTGGTTGCTATGAATGCAAAGAGTAGAATAAAAGCAC
ACTAGTTA
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protein sequence of jgi.p|Nanoce1779_2|596279

>mRNA_6773-protein ID=mRNA_6773-protein|Name=jgi.p|Nanoce1779_2|596279|organism=Nannochloropsis oceanica|type=polypeptide|length=348bp
MAGPKYHWTGAGLFIALLLLLAASCPQAFLVLVPSHRRHRPSRRFVLDPS
IVKDVVTDVAQSGGGANGPQQVAEAMIQLLQGPSGVGIFGLVALSVRLYT
YFTVQSYIAKLCTLFANSGTTVELRYGNSLRNLFYYEPGPGKMERLIVPT
GDPKNIQTIAEVCARLKVAAKATYDVTALPESFEQLKLPADSVDTIVSTY
MLNKSKQPLVTFTKAMELLRDDGILIFVEPVCGDNALLSFVRKYFGAIHR
STGAFGDPGLDIKTIVNVWAKNIGETEGVEIELDVEEQGYFFDPHVVGVM
QKKRIDRGPEYEPSNSEKRKLARRKGMTAGSSKGFGGGSKAEGPGGK*
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mRNA from alignment at scaffold_17:64952..66201-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6773 ID=mRNA_6773|Name=jgi.p|Nanoce1779_2|596279|organism=Nannochloropsis oceanica|type=mRNA|length=1250bp|location=Sequence derived from alignment at scaffold_17:64952..66201- (Nannochloropsis oceanica)
ACAGCAGGCATAATGGCAGGACCCAAGTATCATTGGACGGGTGCAGGGCT
TTTCATAGCTTTGCTTCTACTTCTCGCCGCGTCCTGTCCGCAAGCCTTCC
TCGTCCTTGTTCCATCCCACCGGCGGCACCGACCATCACGGCGCTTTGTG
CTGGATCCGTCCATAGTAAAAGATGTAGTCACGGATGTAGCGCAAAGCGG
TGGCGGTGCCAATGGCCCCCAGCAAGTCGCCGAGGCGATGATTCAGCTGC
TGCAAGGACCGTCTGGGGTGGGTATTTTCGGTTTGGTCGCCTTATCTGTG
AGGCTCTACACGTACTTCACTGTCCAGTCTTATATTGCCAAGCTGTGCAC
GCTCTTTGCAAATAGTGGGACGACAGTCGAGCTACGGTACGGCAACTCCC
TCCGGAACCTCTTCTATTACGAACCAGGTCCAGGGAAGATGGAGCGACTC
ATCGTGCCAACGGGCGACCCAAAGAATATTCAGACGATTGCCGAGGTGAG
GAGCTCTGCTGTATTGATAATGATGCCAGTAAACTAAAGAACGATACCAG
ACGGTACTTATTATCCGCAAGTTGCCCTTTCATGCAGTCCTTCTATTTAT
TTTTCTCTACTCCCTTCTCCTTTTTCAACACACACAGGTATGCGCCCGGC
TGAAAGTAGCGGCGAAGGCAACATATGATGTAACAGCACTTCCCGAGTCA
TTCGAACAACTGAAGCTGCCCGCTGATAGTGTCGACACTATCGTCTCAAC
GTACATGCTGAATAAGAGTAAGCAGCCCCTCGTGACCTTCACTAAGGCTA
TGGAGCTCCTCAGGGATGATGGTATTTTGATTTTCGTCGAACCTGTGTGT
GGGGACAATGCCCTCTTGAGCTTCGTCCGGAAATACTTTGGAGCCATACA
TCGATCCACAGGCGCGTTTGGAGACCCGGGGCTGGACATCAAGACGATCG
TGAATGTGTGGGCAAAGAATATTGGTGAGACAGAGGGTGTTGAGATCGAG
CTAGATGTGGAGGAGCAGGGTTACTTCTTCGACCCACACGTGGTCGGCGT
GATGCAGAAGAAGAGGATTGACCGGGGTCCGGAATACGAGCCGAGTAATT
CAGAAAAACGAAAGCTGGCGCGGAGAAAAGGGATGACGGCGGGTTCGAGC
AAGGGTTTTGGGGGGGGAAGTAAAGCAGAGGGACCGGGGGGCAAGTAAAT
ATGAGCTGGTTGCTATGAATGCAAAGAGTAGAATAAAAGCACACTAGTTA
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Coding sequence (CDS) from alignment at scaffold_17:64952..66201-

>mRNA_6773 ID=mRNA_6773|Name=jgi.p|Nanoce1779_2|596279|organism=Nannochloropsis oceanica|type=CDS|length=2088bp|location=Sequence derived from alignment at scaffold_17:64952..66201- (Nannochloropsis oceanica)
GTATGCGCCCGGCTGAAAGTAGCGGCGAAGGCAACATATGATGTAACAGC
ACTTCCCGAGTCATTCGAACAACTGAAGCTGCCCGCTGATAGTGTCGACA
CTATCGTCTCAACGTACATGCTGAATAAGAGTAAGCAGCCCCTCGTGACC
TTCACTAAGGCTATGGAGCTCCTCAGGGATGATGGTATTTTGATTTTCGT
CGAACCTGTGTGTGGGGACAATGCCCTCTTGAGCTTCGTCCGGAAATACT
TTGGAGCCATACATCGATCCACAGGCGCGTTTGGAGACCCGGGGCTGGAC
ATCAAGACGATCGTGAATGTGTGGGCAAAGAATATTGGTGAGACAGAGGG
TGTTGAGATCGAGCTAGATGTGGAGGAGCAGGGTTACTTCTTCGACCCAC
ACGTGGTCGGCGTGATGCAGAAGAAGAGGATTGACCGGGGTCCGGAATAC
GAGCCGAGTAATTCAGAAAAACGAAAGCTGGCGCGGAGAAAAGGGATGAC
GGCGGGTTCGAGCAAGGGTTTTGGGGGGGGAAGTAAAGCAGAGGGACCGG
GGGGCAAGTAAATGGCAGGACCCAAGTATCATTGGACGGGTGCAGGGCTT
TTCATAGCTTTGCTTCTACTTCTCGCCGCGTCCTGTCCGCAAGCCTTCCT
CGTCCTTGTTCCATCCCACCGGCGGCACCGACCATCACGGCGCTTTGTGC
TGGATCCGTCCATAGTAAAAGATGTAGTCACGGATGTAGCGCAAAGCGGT
GGCGGTGCCAATGGCCCCCAGCAAGTCGCCGAGGCGATGATTCAGCTGCT
GCAAGGACCGTCTGGGGTGGGTATTTTCGGTTTGGTCGCCTTATCTGTGA
GGCTCTACACGTACTTCACTGTCCAGTCTTATATTGCCAAGCTGTGCACG
CTCTTTGCAAATAGTGGGACGACAGTCGAGCTACGGTACGGCAACTCCCT
CCGGAACCTCTTCTATTACGAACCAGGTCCAGGGAAGATGGAGCGACTCA
TCGTGCCAACGGGCGACCCAAAGAATATTCAGACGATTGCCGAGGTATGC
GCCCGGCTGAAAGTAGCGGCGAAGGCAACATATGATGTAACAGCACTTCC
CGAGTCATTCGAACAACTGAAGCTGCCCGCTGATAGTGTCGACACTATCG
TCTCAACGTACATGCTGAATAAGAGTAAGCAGCCCCTCGTGACCTTCACT
AAGGCTATGGAGCTCCTCAGGGATGATGGTATTTTGATTTTCGTCGAACC
TGTGTGTGGGGACAATGCCCTCTTGAGCTTCGTCCGGAAATACTTTGGAG
CCATACATCGATCCACAGGCGCGTTTGGAGACCCGGGGCTGGACATCAAG
ACGATCGTGAATGTGTGGGCAAAGAATATTGGTGAGACAGAGGGTGTTGA
GATCGAGCTAGATGTGGAGGAGCAGGGTTACTTCTTCGACCCACACGTGG
TCGGCGTGATGCAGAAGAAGAGGATTGACCGGGGTCCGGAATACGAGCCG
AGTAATTCAGAAAAACGAAAGCTGGCGCGGAGAAAAGGGATGACGGCGGG
TTCGAGCAAGGGTTTTGGGGGGGGAAGTAAAGCAGAGGGACCGGGGGGCA
AGTAAATGGCAGGACCCAAGTATCATTGGACGGGTGCAGGGCTTTTCATA
GCTTTGCTTCTACTTCTCGCCGCGTCCTGTCCGCAAGCCTTCCTCGTCCT
TGTTCCATCCCACCGGCGGCACCGACCATCACGGCGCTTTGTGCTGGATC
CGTCCATAGTAAAAGATGTAGTCACGGATGTAGCGCAAAGCGGTGGCGGT
GCCAATGGCCCCCAGCAAGTCGCCGAGGCGATGATTCAGCTGCTGCAAGG
ACCGTCTGGGGTGGGTATTTTCGGTTTGGTCGCCTTATCTGTGAGGCTCT
ACACGTACTTCACTGTCCAGTCTTATATTGCCAAGCTGTGCACGCTCTTT
GCAAATAGTGGGACGACAGTCGAGCTACGGTACGGCAACTCCCTCCGGAA
CCTCTTCTATTACGAACCAGGTCCAGGGAAGATGGAGCGACTCATCGTGC
CAACGGGCGACCCAAAGAATATTCAGACGATTGCCGAG
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Synonyms
Publications