jgi.p|Nanoce1779_2|112225, mRNA_6771 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|112225
Unique Name	mRNA_6771
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2320
Alignment location	scaffold_17:59247..61566 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	112311
Track	FilteredModels2
ProteinId	112225

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:59247..61566 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|112225	gene_6771	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|112225	mRNA_6771-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6771	CDS_6771	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:59247..61566-
coding sequence from alignment at scaffold_17:59247..61566-

mRNA sequence

>mRNA_6771 ID=mRNA_6771|Name=jgi.p|Nanoce1779_2|112225|organism=Nannochloropsis oceanica|type=mRNA|length=2320bp
TCGATTTTCCCGCTCCGTCGTCACTGTCTGACTGCACCTATCCCACCGCA
CTGATTCAAGCTCATACACCATCTCGCGCACGGTTTATGTTTTCATTTGA
CCTCGGGGTATTGGGAAACAGGAAACCACCCAGCGCCACAATTTTCATTA
CCTGCCCAGGCAGCCCTCACTTGTTCTGATACTTGAGAGCTATACTTCTC
GCGGAAATAAGACCAACTTGAACAACACGTACAAGAAATCATGACCTTGC
GTGATGACACAGATGGAGACCCGACGTTCTTACTGGTCCCGCGCAACGAC
AATGTGCGTGACGCGTTGGTGCATCAAGCGCTTGGCGTGACCGCAACAAA
TGGGCTGCTCATGCAAACTGCGACCAGGAACGCCGACAGCAGCAGCAATG
CCAACCCTTCCACACCGATGTACGGTCACGCACCCATAAGCCTCCTTCCC
AATGCCTTTCCCGCCCATGAGTACGTGAAGGCGCGGCGCTTGGCTCCTAT
CTGGAACGAGCTTGTAGCACGGGTCGCGTATGACAGGGAGTGGCTGCTGC
GGACGCTTGAGAGCGTTTTGCCCCACGATGACTTTACAAGGCGGCTGGTC
GAAATCTATCAGGCAATCGATGGGGCAGGGCGGGACGTTCAAAAAATACA
TTTGGGCGTGAATCGCAGCGACTACATGCTCCATGTCGAGGGCGCGGCCT
CGACATCGTCATCGCCGTCAATCAAACAAGTGGAGATCAATACCATTGCC
TCGTCATTTGGCTGCTTGTCCACCGAGGTCACGCGCTTGCATCGGTATCT
CGTCCAAAAAATACTAGGATGCACTCGCCTCTACACTCCTTCCTGGTTTT
TCCCCTACAATGACACAATGCGAGGCTTGGCGCACGGGTTAGCCATGGCC
CACAACGAATACATGCGGCAAGAATCTTGCCTGTCTAGGCCGTCCACATC
CTCCCAACATCGGCGGCACCCTTGCGTGCTCATGATTGTGCAGCCTGGCG
AACGCAATATCAATGACCAGAAATTGTTAGAAGTGGCGCTGTGGGAAGGG
TTCGGCGTCCCGTTGCACCGAGCCACGCTCCTGGAAGTAGCAGGAGAGGG
TCACTTGGACCTACAAGGTCGGCAAAACCTGCTGCTCAAATCGCCATGGG
TCTCCGAAGCTGAGGAGAAGGCGGGGCAGGGAGAAGAGGTAGAAGTCACG
GTCGCTTACTTCAGGGCAGCTTATGACCCTAGTGACTACCCAAGCGAAGA
GGAATGGAAGGGAAGGGAGCTCATTGAAATGTCGGCAGCGATTAAATGTC
CATGCATCTCCTACCATTTGGCCGGCACAAAGAAGGTACAAGAGGCTCTA
AGCAGACCAGGTGAGCTAGAACGCTTTCTCAAGAAACCTGCGGACGTGGC
AGCGATCCGGGATTGTCTTATGGGACTGCACGGATTAGAGCCAGGTCTCG
CAGGTGCCGAGGAAGCAGTGAAAGCGGCCCGTGCCAGCCCGGAGGATTTT
GTTCTCAAGCCACAGCGGGAGGGCGGCGGACATAATCTGTATGGAGCAGA
GTTGGTCGAAGCCTTGGTAAGACTGGCGCCTGAGGAGCGCGCGGCGTACA
TTTTGATGGAGAAGATTCGCCCTCCTCCCTTTGATTCGCATTTTGTGCGG
GACGGGCAGGTTTTGCATGGGGCTGCCGCGTTCGAACTAGGGGTGTATGG
TGTATTTTTGGGGGATGGGGAGTGTCAACGGGTGCTTTTGAATGAATCTG
TCGGACATTTATTGCGGACCAAGCTGGCTACAAGTCAGGAGGGCGGGGTG
GCAGCAGGCTTTGCTGTTCTAAGCAGCCCTTTGCTGGTGTTGTCGCAGGA
GGGTGGGAAGTGGGCAAGAAGACGACAATTCGCGGAATTGCAAAAGTATT
CCATGTCAGGCCCTGCCTGGAGAAGAAAGTCGTCGATTTGGAGAAGGGCG
GTAGCGCTATCAGTTTTTGGGGGCGTAGTATTGGGGTTTGCTGCCGTAGC
CAAGGCAGTTGACAAGAGGAGAAGTAGGTGATAGAAAGGAAGCGCAAGAA
AACGAAAAATGGCGCACAAGCAAGTCGCCGAACAACGAATAAGTACATGT
GCTAATAAATTATAATAGCCACCTATCAGCCTCGAGCAAAGTGCCATGTC
AGTCAGACCAGCAAACAGAAATAGAGTCTGGGAGGCGGTATGAAGTCGTT
TTCCTCCTCTCGATAAAGACGGTCGTAGTCACCGAGAATGACGCAACAGT
TATAGAGCGGGCCCTCCAAAGGCATTTGTGGACGATCCTGTCTCCCTATT
CTGTATTTCACGGCACCCAT

protein sequence of jgi.p|Nanoce1779_2|112225

>mRNA_6771-protein ID=mRNA_6771-protein|Name=jgi.p|Nanoce1779_2|112225|organism=Nannochloropsis oceanica|type=polypeptide|length=597bp
MTLRDDTDGDPTFLLVPRNDNVRDALVHQALGVTATNGLLMQTATRNADS
SSNANPSTPMYGHAPISLLPNAFPAHEYVKARRLAPIWNELVARVAYDRE
WLLRTLESVLPHDDFTRRLVEIYQAIDGAGRDVQKIHLGVNRSDYMLHVE
GAASTSSSPSIKQVEINTIASSFGCLSTEVTRLHRYLVQKILGCTRLYTP
SWFFPYNDTMRGLAHGLAMAHNEYMRQESCLSRPSTSSQHRRHPCVLMIV
QPGERNINDQKLLEVALWEGFGVPLHRATLLEVAGEGHLDLQGRQNLLLK
SPWVSEAEEKAGQGEEVEVTVAYFRAAYDPSDYPSEEEWKGRELIEMSAA
IKCPCISYHLAGTKKVQEALSRPGELERFLKKPADVAAIRDCLMGLHGLE
PGLAGAEEAVKAARASPEDFVLKPQREGGGHNLYGAELVEALVRLAPEER
AAYILMEKIRPPPFDSHFVRDGQVLHGAAAFELGVYGVFLGDGECQRVLL
NESVGHLLRTKLATSQEGGVAAGFAVLSSPLLVLSQEGGKWARRRQFAEL
QKYSMSGPAWRRKSSIWRRAVALSVFGGVVLGFAAVAKAVDKRRSR*

mRNA from alignment at scaffold_17:59247..61566-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6771 ID=mRNA_6771|Name=jgi.p|Nanoce1779_2|112225|organism=Nannochloropsis oceanica|type=mRNA|length=2320bp|location=Sequence derived from alignment at scaffold_17:59247..61566- (Nannochloropsis oceanica)
TCGATTTTCCCGCTCCGTCGTCACTGTCTGACTGCACCTATCCCACCGCA
CTGATTCAAGCTCATACACCATCTCGCGCACGGTTTATGTTTTCATTTGA
CCTCGGGGTATTGGGAAACAGGAAACCACCCAGCGCCACAATTTTCATTA
CCTGCCCAGGCAGCCCTCACTTGTTCTGATACTTGAGAGCTATACTTCTC
GCGGAAATAAGACCAACTTGAACAACACGTACAAGAAATCATGACCTTGC
GTGATGACACAGATGGAGACCCGACGTTCTTACTGGTCCCGCGCAACGAC
AATGTGCGTGACGCGTTGGTGCATCAAGCGCTTGGCGTGACCGCAACAAA
TGGGCTGCTCATGCAAACTGCGACCAGGAACGCCGACAGCAGCAGCAATG
CCAACCCTTCCACACCGATGTACGGTCACGCACCCATAAGCCTCCTTCCC
AATGCCTTTCCCGCCCATGAGTACGTGAAGGCGCGGCGCTTGGCTCCTAT
CTGGAACGAGCTTGTAGCACGGGTCGCGTATGACAGGGAGTGGCTGCTGC
GGACGCTTGAGAGCGTTTTGCCCCACGATGACTTTACAAGGCGGCTGGTC
GAAATCTATCAGGCAATCGATGGGGCAGGGCGGGACGTTCAAAAAATACA
TTTGGGCGTGAATCGCAGCGACTACATGCTCCATGTCGAGGGCGCGGCCT
CGACATCGTCATCGCCGTCAATCAAACAAGTGGAGATCAATACCATTGCC
TCGTCATTTGGCTGCTTGTCCACCGAGGTCACGCGCTTGCATCGGTATCT
CGTCCAAAAAATACTAGGATGCACTCGCCTCTACACTCCTTCCTGGTTTT
TCCCCTACAATGACACAATGCGAGGCTTGGCGCACGGGTTAGCCATGGCC
CACAACGAATACATGCGGCAAGAATCTTGCCTGTCTAGGCCGTCCACATC
CTCCCAACATCGGCGGCACCCTTGCGTGCTCATGATTGTGCAGCCTGGCG
AACGCAATATCAATGACCAGAAATTGTTAGAAGTGGCGCTGTGGGAAGGG
TTCGGCGTCCCGTTGCACCGAGCCACGCTCCTGGAAGTAGCAGGAGAGGG
TCACTTGGACCTACAAGGTCGGCAAAACCTGCTGCTCAAATCGCCATGGG
TCTCCGAAGCTGAGGAGAAGGCGGGGCAGGGAGAAGAGGTAGAAGTCACG
GTCGCTTACTTCAGGGCAGCTTATGACCCTAGTGACTACCCAAGCGAAGA
GGAATGGAAGGGAAGGGAGCTCATTGAAATGTCGGCAGCGATTAAATGTC
CATGCATCTCCTACCATTTGGCCGGCACAAAGAAGGTACAAGAGGCTCTA
AGCAGACCAGGTGAGCTAGAACGCTTTCTCAAGAAACCTGCGGACGTGGC
AGCGATCCGGGATTGTCTTATGGGACTGCACGGATTAGAGCCAGGTCTCG
CAGGTGCCGAGGAAGCAGTGAAAGCGGCCCGTGCCAGCCCGGAGGATTTT
GTTCTCAAGCCACAGCGGGAGGGCGGCGGACATAATCTGTATGGAGCAGA
GTTGGTCGAAGCCTTGGTAAGACTGGCGCCTGAGGAGCGCGCGGCGTACA
TTTTGATGGAGAAGATTCGCCCTCCTCCCTTTGATTCGCATTTTGTGCGG
GACGGGCAGGTTTTGCATGGGGCTGCCGCGTTCGAACTAGGGGTGTATGG
TGTATTTTTGGGGGATGGGGAGTGTCAACGGGTGCTTTTGAATGAATCTG
TCGGACATTTATTGCGGACCAAGCTGGCTACAAGTCAGGAGGGCGGGGTG
GCAGCAGGCTTTGCTGTTCTAAGCAGCCCTTTGCTGGTGTTGTCGCAGGA
GGGTGGGAAGTGGGCAAGAAGACGACAATTCGCGGAATTGCAAAAGTATT
CCATGTCAGGCCCTGCCTGGAGAAGAAAGTCGTCGATTTGGAGAAGGGCG
GTAGCGCTATCAGTTTTTGGGGGCGTAGTATTGGGGTTTGCTGCCGTAGC
CAAGGCAGTTGACAAGAGGAGAAGTAGGTGATAGAAAGGAAGCGCAAGAA
AACGAAAAATGGCGCACAAGCAAGTCGCCGAACAACGAATAAGTACATGT
GCTAATAAATTATAATAGCCACCTATCAGCCTCGAGCAAAGTGCCATGTC
AGTCAGACCAGCAAACAGAAATAGAGTCTGGGAGGCGGTATGAAGTCGTT
TTCCTCCTCTCGATAAAGACGGTCGTAGTCACCGAGAATGACGCAACAGT
TATAGAGCGGGCCCTCCAAAGGCATTTGTGGACGATCCTGTCTCCCTATT
CTGTATTTCACGGCACCCAT

Coding sequence (CDS) from alignment at scaffold_17:59247..61566-

>mRNA_6771 ID=mRNA_6771|Name=jgi.p|Nanoce1779_2|112225|organism=Nannochloropsis oceanica|type=CDS|length=1791bp|location=Sequence derived from alignment at scaffold_17:59247..61566- (Nannochloropsis oceanica)
ATGACCTTGCGTGATGACACAGATGGAGACCCGACGTTCTTACTGGTCCC
GCGCAACGACAATGTGCGTGACGCGTTGGTGCATCAAGCGCTTGGCGTGA
CCGCAACAAATGGGCTGCTCATGCAAACTGCGACCAGGAACGCCGACAGC
AGCAGCAATGCCAACCCTTCCACACCGATGTACGGTCACGCACCCATAAG
CCTCCTTCCCAATGCCTTTCCCGCCCATGAGTACGTGAAGGCGCGGCGCT
TGGCTCCTATCTGGAACGAGCTTGTAGCACGGGTCGCGTATGACAGGGAG
TGGCTGCTGCGGACGCTTGAGAGCGTTTTGCCCCACGATGACTTTACAAG
GCGGCTGGTCGAAATCTATCAGGCAATCGATGGGGCAGGGCGGGACGTTC
AAAAAATACATTTGGGCGTGAATCGCAGCGACTACATGCTCCATGTCGAG
GGCGCGGCCTCGACATCGTCATCGCCGTCAATCAAACAAGTGGAGATCAA
TACCATTGCCTCGTCATTTGGCTGCTTGTCCACCGAGGTCACGCGCTTGC
ATCGGTATCTCGTCCAAAAAATACTAGGATGCACTCGCCTCTACACTCCT
TCCTGGTTTTTCCCCTACAATGACACAATGCGAGGCTTGGCGCACGGGTT
AGCCATGGCCCACAACGAATACATGCGGCAAGAATCTTGCCTGTCTAGGC
CGTCCACATCCTCCCAACATCGGCGGCACCCTTGCGTGCTCATGATTGTG
CAGCCTGGCGAACGCAATATCAATGACCAGAAATTGTTAGAAGTGGCGCT
GTGGGAAGGGTTCGGCGTCCCGTTGCACCGAGCCACGCTCCTGGAAGTAG
CAGGAGAGGGTCACTTGGACCTACAAGGTCGGCAAAACCTGCTGCTCAAA
TCGCCATGGGTCTCCGAAGCTGAGGAGAAGGCGGGGCAGGGAGAAGAGGT
AGAAGTCACGGTCGCTTACTTCAGGGCAGCTTATGACCCTAGTGACTACC
CAAGCGAAGAGGAATGGAAGGGAAGGGAGCTCATTGAAATGTCGGCAGCG
ATTAAATGTCCATGCATCTCCTACCATTTGGCCGGCACAAAGAAGGTACA
AGAGGCTCTAAGCAGACCAGGTGAGCTAGAACGCTTTCTCAAGAAACCTG
CGGACGTGGCAGCGATCCGGGATTGTCTTATGGGACTGCACGGATTAGAG
CCAGGTCTCGCAGGTGCCGAGGAAGCAGTGAAAGCGGCCCGTGCCAGCCC
GGAGGATTTTGTTCTCAAGCCACAGCGGGAGGGCGGCGGACATAATCTGT
ATGGAGCAGAGTTGGTCGAAGCCTTGGTAAGACTGGCGCCTGAGGAGCGC
GCGGCGTACATTTTGATGGAGAAGATTCGCCCTCCTCCCTTTGATTCGCA
TTTTGTGCGGGACGGGCAGGTTTTGCATGGGGCTGCCGCGTTCGAACTAG
GGGTGTATGGTGTATTTTTGGGGGATGGGGAGTGTCAACGGGTGCTTTTG
AATGAATCTGTCGGACATTTATTGCGGACCAAGCTGGCTACAAGTCAGGA
GGGCGGGGTGGCAGCAGGCTTTGCTGTTCTAAGCAGCCCTTTGCTGGTGT
TGTCGCAGGAGGGTGGGAAGTGGGCAAGAAGACGACAATTCGCGGAATTG
CAAAAGTATTCCATGTCAGGCCCTGCCTGGAGAAGAAAGTCGTCGATTTG
GAGAAGGGCGGTAGCGCTATCAGTTTTTGGGGGCGTAGTATTGGGGTTTG
CTGCCGTAGCCAAGGCAGTTGACAAGAGGAGAAGTAGGTGA

Synonyms

Publications