jgi.p|Nanoce1779_2|557687, mRNA_6770 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|557687
Unique Name	mRNA_6770
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2916
Alignment location	scaffold_17:56001..58927 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	557773
Track	FilteredModels2
ProteinId	557687

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:56001..58927 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|557687	gene_6770	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|557687	mRNA_6770-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6770	CDS_6770	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:56001..58927+
coding sequence from alignment at scaffold_17:56001..58927+

mRNA sequence

>mRNA_6770 ID=mRNA_6770|Name=jgi.p|Nanoce1779_2|557687|organism=Nannochloropsis oceanica|type=mRNA|length=2916bp
GAATGTGTCTTTGGTGCGTTTAATTTTCTTGTTCGTCGTCCTTCTGTTGT
GCGTGCCTTGTGGGTATATATTACTGTTTTAAAAATACTCTCCCAGCCCG
TACACATACACGCGGCCACAATTTCGTGGTTTTGTTCTTGTTTTGCCATC
ATCAAAGCGTATTCCGTCAGTCTTTTTATCCCCCAATCAAATCTTTGTGC
GTGTCCATAAATGTCCTCGCAACTGTCGCCGCTGCAGCAACAAATCGATG
GCTGTGGTTTGAAATACGTGCGGACGCGGATCTCTCTCTTACTTGGTCTT
GGACTTGGCAATTGCTGCTGTTGCGCCATGGCCATGCCCACCACCGCCCC
ACAAGACTTTGATACCAAGACCGATAAAGACAGAAGCTACGCCCATCCAC
TGCCACCAGTGCACCGCATGCTTGTACGCGATGATGCTGATAAAAAGCGT
GATCATTTTGCGAGTCACCGTAACTGTGACCGACACCAAGCTCCCAAACT
CATCAATGCTAGAACAGGAAGAGAGCGAGAGAGTGAGGAAAGGAGGAGGT
GGGGAAGAGGAAGAAGGTGTGAGTAATCCAGCAAGAACAAGTCAAATGGT
CGGCAAACGAGGGAGAGGAGGACGTCCGGAAGGAAAAGACCATTGCACTT
ACATGCTGTAGATAAACACCTGCCCCACCGCGTTCGAAAAGCTAAACGTG
AGCAAATCCCTGATGATTGCCGGATACGTTGTCAGAAACCTGACAGTATA
TGCCAGCTGGGATCCATCTTCCCGTAAAACCAAGTCCGACAACAGAAAAC
ATGAGGCGAAAATGAGCGACCAGATATTGACCATGGCCATCATGTAATAA
GGCGAGACGCGAGACTTCTGGTAAATCCGATCCTGCTCCGCATTGGTAAA
CCCATCAATCAATAAATTGGTCGCTGCCATGGAAAGGCCCCGTACCTCTT
GGAAGGTAAAGCTCGAAGCTACAATCCCCATAACCGCCTGGATCATCATC
CAAAGATTGTCCCTTGCCACCGCTGCCTCCAAAGGAGAAACCTTCTTGTT
GCTCTGCCCGCCTACGGCATAGCTTGCGCTTATGTCGTAGTGCCCGCCGT
GACGGCCCCCTTCACCACTGGCTTGAGGTCCCTTGACCATAAATAGCATC
ACGCCACATGAAATCAACGCCACGGCCACGTATTCATATGTCTTGTAACG
CACGCCATTCACGACAGCGCCTACAAGCATGACTGGCAAGAGCTTGCAAT
TCTTCACCAGAATGAGGAGGGGATATGAAATGTCTCGCAACGACATGTAC
CCGATTGGGGATGCAATAGTGTTGCTCAACGCGGGCCGCCAAAAGGTGGT
AAAAGGGGCGGTGGTGCCCTTGGTCAACTGGTGTAGGATCAAGCCTACAA
TCACGGCGGCAGCGGCCATGAAGGCGTTGAGCGCGGCCATGGCATTGAAC
CTGCCGGGCTTGGCGTCCAAATCGGCTGCTGGCTTGTAAGCAGTGGTGGT
CACTCTTTCTTGCACAAGGCCCCAGTAAATGAAGCAAACATAGATGCCCA
AGGCTTTAATCAACAATCGGACCCCGCTTCCGCTCTCATGAGGTTGTGCC
TTGGCAGTCTTTTTAGTGCCTATGCTTCTGGCAGCAATGGCCGCGGCAGT
GGCATTTCCCCCCATGGACTGCCGCCTCGTTTGCACCGCCATGTCTTGAC
AACGGGTCACCCTTGACCACAGCTGCCGCTCTGAGTAGTCTTTCAGGGAT
TTTTGAGCGGGAAAGCTGGTTCTTCCTATCTTCTTGCAGTAGGGGTGGGG
AGGTGGTGCGACGGCAGGGAATAAGGTCTAGTCTGTGCATAAGAAGAGGG
AGGAAGCCATGTTAATCAGGGAGATAGTCATGATCAGAGTGGCGGCGCAG
TGGCGTGGTGTGATCATCAGCAGCGCCTCATTTCAAATTGCTCTCGTTCG
GCAGCCGTTGGGATGGAGGGGAGGTTTTTCATGCCCCTGTGGCATGGCGC
AAGCAATCCCAAACGTCATTCCCATCTGACGTGTAGGAAGGCAAATTATG
ACCCTCAATACCACTCTTATCTCAGTCCTTTCTCTTCTCCACCAAAAGTA
TTCCCCCCCCCCTTCATCTTAATTCCGCCTCATTTTCACACTTAGATTTT
TCCAACGCGCTGACACGAATTTAAATAAAATGCAAATCCAACAAAAGCAT
TTCCAACTTTTTCTCTAGACAGATCGTTGCATTCTTACCGCCTTAAGTCC
ATGTACTCCATTAAGCGCCGCCATCCCAAACTCGTAGATATGCCAGATGG
GGAACCGCAACCCTTCTTATCAGTGGGGGAGCCGTATCAGGACAAGAGCG
ATCTACCGGAACGGTGGAAGGGCAAGCGTATGGTCTGTGGCGGGACGCCC
CAAGAAACGTTTAGCAGGCTCAAGTATCCCGAGGGTGAACCCTATGTGGC
CGTGCCATTGTATATCGAGGCAGAGTCCATCGACACCCGGAAGGCGGGAT
TCGGGAGCAAAGATGCGTCAAAAAGAGACGAGTTTACAAACTTTATTCGC
ACCGAGCAGTATCGTGAGGTGCTCCGCAAGGAGCTGGCATCCCTCAAAAA
TGCCACTGGCGGCAGCAACAGCAGATCCACGGCCACGATGACAAGGGCAC
CACCCGGGACTTGGCAAATGACCTTCTTGTACGACATTGGCCGCAGTCGT
ACGACCCCCTTTGACCCGAAGCGTCGCCGCGATCGCTACTACCAGCGGTC
TGCACCTGCGACCAACGGCAGCAAGCCTCGCTTTAGTCCATACCGTCTTT
CATCCGAAGAGATTGGGGCCGGACTGTGGCAAGTCAAGTCGATGCCGCCA
CGCGCTGCGCCTGGCTCGTGTCATAAGGCATTTATGGACAAAAGTCATCT
CAAGACTGCGATTTAG

protein sequence of jgi.p|Nanoce1779_2|557687

>mRNA_6770-protein ID=mRNA_6770-protein|Name=jgi.p|Nanoce1779_2|557687|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MYSIKRRHPKLVDMPDGEPQPFLSVGEPYQDKSDLPERWKGKRMVCGGTP
QETFSRLKYPEGEPYVAVPLYIEAESIDTRKAGFGSKDASKRDEFTNFIR
TEQYREVLRKELASLKNATGGSNSRSTATMTRAPPGTWQMTFLYDIGRSR
TTPFDPKRRRDRYYQRSAPATNGSKPRFSPYRLSSEEIGAGLWQVKSMPP
RAAPGSCHKAFMDKSHLKTAI*

mRNA from alignment at scaffold_17:56001..58927+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6770 ID=mRNA_6770|Name=jgi.p|Nanoce1779_2|557687|organism=Nannochloropsis oceanica|type=mRNA|length=2927bp|location=Sequence derived from alignment at scaffold_17:56001..58927+ (Nannochloropsis oceanica)
GAATGTGTCTTTGGTGCGTTTAATTTTCTTGTTCGTCGTCCTTCTGTTGT
GCGTGCCTTGTGGGTATATATTACTGTTTTAAAAATACTCTCCCAGCCCG
TACACATACACGCGGCCACAATTTCGTGGTTTTGTTCTTGTTTTGCCATC
ATCAAAGCGTATTCCGTCAGTCTTTTTATCCCCCAATCAAATCTTTGTGC
GTGTCCATAAATGTCCTCGCAACTGTCGCCGCTGCAGCAACAAATCGATG
GCTGTGGTTTGAAATACGTGCGGACGCGGATCTCTCTCTTACTTGGTCTT
GGACTTGGCAATTGCTGCTGTTGCGCCATGGCCATGCCCACCACCGCCCC
ACAAGACTTTGATACCAAGACCGATAAAGACAGAAGCTACGCCCATCCAC
TGCCACCAGTGCACCGCATGCTTGTACGCGATGATGCTGATAAAAAGCGT
GATCATTTTGCGAGTCACCGTAACTGTGACCGACACCAAGCTCCCAAACT
CATCAATGCTAGAACAGGAAGAGAGCGAGAGAGTGAGGAAAGGAGGAGGT
GGGGAAGAGGAAGAAGGTGTGAGTAATCCAGCAAGAACAAGTCAAATGGT
CGGCAAACGAGGGAGAGGAGGACGTCCGGAAGGAAAAGACCATTGCACTT
ACATGCTGTAGATAAACACCTGCCCCACCGCGTTCGAAAAGCTAAACGTG
AGCAAATCCCTGATGATTGCCGGATACGTTGTCAGAAACCTGACAGTATA
TGCCAGCTGGGATCCATCTTCCCGTAAAACCAAGTCCGACAACAGAAAAC
ATGAGGCGAAAATGAGCGACCAGATATTGACCATGGCCATCATGTAATAA
GGCGAGACGCGAGACTTCTGGTAAATCCGATCCTGCTCCGCATTGGTAAA
CCCATCAATCAATAAATTGGTCGCTGCCATGGAAAGGCCCCGTACCTCTT
GGAAGGTAAAGCTCGAAGCTACAATCCCCATAACCGCCTGGATCATCATC
CAAAGATTGTCCCTTGCCACCGCTGCCTCCAAAGGAGAAACCTTCTTGTT
GCTCTGCCCGCCTACGGCATAGCTTGCGCTTATGTCGTAGTGCCCGCCGT
GACGGCCCCCTTCACCACTGGCTTGAGGTCCCTTGACCATAAATAGCATC
ACGCCACATGAAATCAACGCCACGGCCACGTATTCATATGTCTTGTAACG
CACGCCATTCACGACAGCGCCTACAAGCATGACTGGCAAGAGCTTGCAAT
TCTTCACCAGAATGAGGAGGGGATATGAAATGTCTCGCAACGACATGTAC
CCGATTGGGGATGCAATAGTGTTGCTCAACGCGGGCCGCCAAAAGGTGGT
AAAAGGGGCGGTGGTGCCCTTGGTCAACTGGTGTAGGATCAAGCCTACAA
TCACGGCGGCAGCGGCCATGAAGGCGTTGAGCGCGGCCATGGCATTGAAC
CTGCCGGGCTTGGCGTCCAAATCGGCTGCTGGCTTGTAAGCAGTGGTGGT
CACTCTTTCTTGCACAAGGCCCCAGTAAATGAAGCAAACATAGATGCCCA
AGGCTTTAATCAACAATCGGACCCCGCTTCCGCTCTCATGAGGTTGTGCC
TTGGCAGTCTTTTTAGTGCCTATGCTTCTGGCAGCAATGGCCGCGGCAGT
GGCATTTCCCCCCATGGACTGCCGCCTCGTTTGCACCGCCATGTCTTGAC
AACGGGTCACCCTTGACCACAGCTGCCGCTCTGAGTAGTCTTTCAGGGAT
TTTTGAGCGGGAAAGCTGGTTCTTCCTATCTTCTTGCAGTAGGGGTGGGG
AGGTGGTGCGACGGCAGGGAATAAGGTCTAGTCTGTGCATAAGAAGAGGG
AGGAAGCCATGTTAATCAGGGAGATAGTCATGATCAGAGTGGCGGCGCAG
TGGCGTGGTGTGATCATCAGCAGCGCCTCATTTCAAATTGCTCTCGTTCG
GCAGCCGTTGGGATGGAGGGGAGGTTTTTCATGCCCCTGTGGCATGGCGC
AAGCAATCCCAAACGTCATTCCCATCTGACGTGTAGGAAGGCAAATTATG
ACCCTCAATACCACTCTTATCTCAGTCCTTTCTCTTCTCCACCAAAAGTA
TTCCCCCCCCCCTTCATCTTAATTCCGCCTCATTTTCACACTTAGATTTT
TCCAACGCGCTGACACGAATTTAAATAAAATGCAAATCCAACAAAAGCAT
TTCCAACTTTTTCTCTAGACAGATCGTTGCATTCTTACCGCCTTAAGTCC
ATGTACTCCATTAAGCGCCGCCATCCCAAACTCGTAGATATGCCAGATGG
GGAACCGCAACCCTTCTTATCAGTGGGGGAGCCGTATCAGGACAAGAGCG
ATCTACCGGAACGGTGGAAGGGCAAGCGTATGGTCTGTGGCGGGACGCCC
CAAGAAACGTTTAGCAGGCTCAAGTATCCCGAGGGTGAACCCTATGTGGC
CGTGCCATTGTATATCGAGGCAGAGTCCATCGACACCCGGAAGGCGGGAT
TCGGGAGCAAAGATGCGTCAAAAAGAGACGAGTTTACAAACTTTATTCGC
ACCGAGCAGTATCGTGAGGTGCTCCGCAAGGAGCTGGCATCCCTCAAAAA
TGCCACTGGCGGCAGCAACAGCAGATCCACGGCCACGATGACAAGGGCAC
CACCCGGGACTTGGCAAATGGTGCTAGTAAGACCTTCTTGTACGACATTG
GCCGCAGTCGTACGACCCCCTTTGACCCGAAGCGTCGCCGCGATCGCTAC
TACCAGCGGTCTGCACCTGCGACCAACGGCAGCAAGCCTCGCTTTAGTCC
ATACCGTCTTTCATCCGAAGAGATTGGGGCCGGACTGTGGCAAGTCAAGT
CGATGCCGCCACGCGCTGCGCCTGGCTCGTGTCATAAGGCATTTATGGAC
AAAAGTCATCTCAAGACTGCGATTTAG

Coding sequence (CDS) from alignment at scaffold_17:56001..58927+

>mRNA_6770 ID=mRNA_6770|Name=jgi.p|Nanoce1779_2|557687|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at scaffold_17:56001..58927+ (Nannochloropsis oceanica)
ATGTACTCCATTAAGCGCCGCCATCCCAAACTCGTAGATATGCCAGATGG
GGAACCGCAACCCTTCTTATCAGTGGGGGAGCCGTATCAGGACAAGAGCG
ATCTACCGGAACGGTGGAAGGGCAAGCGTATGGTCTGTGGCGGGACGCCC
CAAGAAACGTTTAGCAGGCTCAAGTATCCCGAGGGTGAACCCTATGTGGC
CGTGCCATTGTATATCGAGGCAGAGTCCATCGACACCCGGAAGGCGGGAT
TCGGGAGCAAAGATGCGTCAAAAAGAGACGAGTTTACAAACTTTATTCGC
ACCGAGCAGTATCGTGAGGTGCTCCGCAAGGAGCTGGCATCCCTCAAAAA
TGCCACTGGCGGCAGCAACAGCAGATCCACGGCCACGATGACAAGGGCAC
CACCCGGGACTTGGCAAATGACCTTCTTGTACGACATTGGCCGCAGTCGT
ACGACCCCCTTTGACCCGAAGCGTCGCCGCGATCGCTACTACCAGCGGTC
TGCACCTGCGACCAACGGCAGCAAGCCTCGCTTTAGTCCATACCGTCTTT
CATCCGAAGAGATTGGGGCCGGACTGTGGCAAGTCAAGTCGATGCCGCCA
CGCGCTGCGCCTGGCTCGTGTCATAAGGCATTTATGGACAAAAGTCATCT
CAAGACTGCGATTTAGATGTACTCCATTAAGCGCCGCCATCCCAAACTCG
TAGATATGCCAGATGGGGAACCGCAACCCTTCTTATCAGTGGGGGAGCCG
TATCAGGACAAGAGCGATCTACCGGAACGGTGGAAGGGCAAGCGTATGGT
CTGTGGCGGGACGCCCCAAGAAACGTTTAGCAGGCTCAAGTATCCCGAGG
GTGAACCCTATGTGGCCGTGCCATTGTATATCGAGGCAGAGTCCATCGAC
ACCCGGAAGGCGGGATTCGGGAGCAAAGATGCGTCAAAAAGAGACGAGTT
TACAAACTTTATTCGCACCGAGCAGTATCGTGAGGTGCTCCGCAAGGAGC
TGGCATCCCTCAAAAATGCCACTGGCGGCAGCAACAGCAGATCCACGGCC
ACGATGACAAGGGCACCACCCGGGACTTGGCAAATGACCTTCTTGTACGA
CATTGGCCGCAGTCGTACGACCCCCTTTGACCCGAAGCGTCGCCGCGATC
GCTACTACCAGCGGTCTGCACCTGCGACCAACGGCAGCAAGCCTCGCTTT
AGTCCATACCGTCTTTCATCCGAAGAGATTGGGGCCGGACTGTGGCAAGT
CAAGTCGATGCCGCCACGCGCTGCGCCTGGCTCGTGTCATAAGGCATTTA
TGGACAAAAGTCATCTCAAGACTGCGATTTAG

Synonyms

Publications