jgi.p|Nanoce1779_2|596269, mRNA_6769 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596269
Unique NamemRNA_6769
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1693
Alignment locationscaffold_17:56000..57836 -

Link to JBrowse

Properties
Property NameValue
TranscriptId596355
TrackFilteredModels2
ProteinId596269
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:56000..57836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596269gene_6769Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596269mRNA_6769-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6769CDS_6769Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6769 ID=mRNA_6769|Name=jgi.p|Nanoce1779_2|596269|organism=Nannochloropsis oceanica|type=mRNA|length=1693bp
ACAGACTAGACCTTATTCCCTGCCGTCGCACCACCTCCCCACCCCTACTG
CAAGAAGATAGGAAGAACCAGCTTTCCCGCTCAAAAATCCCTGAAAGACT
ACTCAGAGCGGCAGCTGTGGTCAAGGGTGACCCGTTGTCAAGACATGGCG
GTGCAAACGAGGCGGCAGTCCATGGGGGGAAATGCCACTGCCGCGGCCAT
TGCTGCCAGAAGCATAGGCACTAAAAAGACTGCCAAGGCACAACCTCATG
AGAGCGGAAGCGGGGTCCGATTGTTGATTAAAGCCTTGGGCATCTATGTT
TGCTTCATTTACTGGGGCCTTGTGCAAGAAAGAGTGACCACCACTGCTTA
CAAGCCAGCAGCCGATTTGGACGCCAAGCCCGGCAGGTTCAATGCCATGG
CCGCGCTCAACGCCTTCATGGCCGCTGCCGCCGTGATTGTAGGCTTGATC
CTACACCAGTTGACCAAGGGCACCACCGCCCCTTTTACCACCTTTTGGCG
GCCCGCGTTGAGCAACACTATTGCATCCCCAATCGGGTACATGTCGTTGC
GAGACATTTCATATCCCCTCCTCATTCTGGTGAAGAATTGCAAGCTCTTG
CCAGTCATGCTTGTAGGCGCTGTCGTGAATGGCGTGCGTTACAAGACATA
TGAATACGTGGCCGTGGCGTTGATTTCATGTGGCGTGATGCTATTTATGG
TCAAGGGACCTCAAGCCAGTGGTGAAGGGGGCCGTCACGGCGGGCACTAC
GACATAAGCGCAAGCTATGCCGTAGGCGGGCAGAGCAACAAGAAGGTTTC
TCCTTTGGAGGCAGCGGTGGCAAGGGACAATCTTTGGATGATGATCCAGG
CGGTTATGGGGATTGTAGCTTCGAGCTTTACCTTCCAAGAGGTACGGGGC
CTTTCCATGGCAGCGACCAATTTATTGATTGATGGGTTTACCAATGCGGA
GCAGGATCGGATTTACCAGAAGTCTCGCGTCTCGCCTTATTACATGATGG
CCATGGTCAATATCTGGTCGCTCATTTTCGCCTCATGTTTTCTGTTGTCG
GACTTGGTTTTACGGGAAGATGGATCCCAGCTGGCATATACTGTCAGGTT
TCTGACAACGTATCCGGCAATCATCAGGGATTTGCTCACGTTTAGCTTTT
CGAACGCGGTGGGGCAGGTGTTTATCTACAGCATCATTGATGAGTTTGGG
AGCTTGGTGTCGGTCACAGTTACGGTGACTCGCAAAATGATCACGCTTTT
TATCAGCATCATCGCGTACAAGCATGCGGTGCACTGGTGGCAGTGGATGG
GCGTAGCTTCTGTCTTTATCGGTCTTGGTATCAAAGTCTTGTGGGGCGGT
GGTGGGCATGGCCATGGCGCAACAGCAGCAATTGCCAAGTCCAAGACCAA
GTAAGAGAGAGATCCGCGTCCGCACGTATTTCAAACCACAGCCATCGATT
TGTTGCTGCAGCGGCGACAGTTGCGAGGACATTTATGGACACGCACAAAG
ATTTGATTGGGGGATAAAAAGACTGACGGAATACGCTTTGATGATGGCAA
AACAAGAACAAAACCACGAAATTGTGGCCGCGTGTATGTGTACGGGCTGG
GAGAGTATTTTTAAAACAGTAATATATACCCACAAGGCACGCACAACAGA
AGGACGACGAACAAGAAAATTAAACGCACCAAAGACACATTCA
back to top

protein sequence of jgi.p|Nanoce1779_2|596269

>mRNA_6769-protein ID=mRNA_6769-protein|Name=jgi.p|Nanoce1779_2|596269|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MAVQTRRQSMGGNATAAAIAARSIGTKKTAKAQPHESGSGVRLLIKALGI
YVCFIYWGLVQERVTTTAYKPAADLDAKPGRFNAMAALNAFMAAAAVIVG
LILHQLTKGTTAPFTTFWRPALSNTIASPIGYMSLRDISYPLLILVKNCK
LLPVMLVGAVVNGVRYKTYEYVAVALISCGVMLFMVKGPQASGEGGRHGG
HYDISASYAVGGQSNKKVSPLEAAVARDNLWMMIQAVMGIVASSFTFQEV
RGLSMAATNLLIDGFTNAEQDRIYQKSRVSPYYMMAMVNIWSLIFASCFL
LSDLVLREDGSQLAYTVRFLTTYPAIIRDLLTFSFSNAVGQVFIYSIIDE
FGSLVSVTVTVTRKMITLFISIIAYKHAVHWWQWMGVASVFIGLGIKVLW
GGGGHGHGATAAIAKSKTK*
back to top

mRNA from alignment at scaffold_17:56000..57836-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6769 ID=mRNA_6769|Name=jgi.p|Nanoce1779_2|596269|organism=Nannochloropsis oceanica|type=mRNA|length=1837bp|location=Sequence derived from alignment at scaffold_17:56000..57836- (Nannochloropsis oceanica)
ACAGACTAGACCTTATTCCCTGCCGTCGCACCACCTCCCCACCCCTACTG
CAAGAAGATAGGAAGAACCAGCTTTCCCGCTCAAAAATCCCTGAAAGACT
ACTCAGAGCGGCAGCTGTGGTCAAGGGTGACCCGTTGTCAAGACATGGCG
GTGCAAACGAGGCGGCAGTCCATGGGGGGAAATGCCACTGCCGCGGCCAT
TGCTGCCAGAAGCATAGGCACTAAAAAGACTGCCAAGGCACAACCTCATG
AGAGCGGAAGCGGGGTCCGATTGTTGATTAAAGCCTTGGGCATCTATGTT
TGCTTCATTTACTGGGGCCTTGTGCAAGAAAGAGTGACCACCACTGCTTA
CAAGCCAGCAGCCGATTTGGACGCCAAGCCCGGCAGGTTCAATGCCATGG
CCGCGCTCAACGCCTTCATGGCCGCTGCCGCCGTGATTGTAGGCTTGATC
CTACACCAGTTGACCAAGGGCACCACCGCCCCTTTTACCACCTTTTGGCG
GCCCGCGTTGAGCAACACTATTGCATCCCCAATCGGGTACATGTCGTTGC
GAGACATTTCATATCCCCTCCTCATTCTGGTGAAGAATTGCAAGCTCTTG
CCAGTCATGCTTGTAGGCGCTGTCGTGAATGGCGTGCGTTACAAGACATA
TGAATACGTGGCCGTGGCGTTGATTTCATGTGGCGTGATGCTATTTATGG
TCAAGGGACCTCAAGCCAGTGGTGAAGGGGGCCGTCACGGCGGGCACTAC
GACATAAGCGCAAGCTATGCCGTAGGCGGGCAGAGCAACAAGAAGGTTTC
TCCTTTGGAGGCAGCGGTGGCAAGGGACAATCTTTGGATGATGATCCAGG
CGGTTATGGGGATTGTAGCTTCGAGCTTTACCTTCCAAGAGGTACGGGGC
CTTTCCATGGCAGCGACCAATTTATTGATTGATGGGTTTACCAATGCGGA
GCAGGATCGGATTTACCAGAAGTCTCGCGTCTCGCCTTATTACATGATGG
CCATGGTCAATATCTGGTCGCTCATTTTCGCCTCATGTTTTCTGTTGTCG
GACTTGGTTTTACGGGAAGATGGATCCCAGCTGGCATATACTGTCAGGTT
TCTGACAACGTATCCGGCAATCATCAGGGATTTGCTCACGTTTAGCTTTT
CGAACGCGGTGGGGCAGGTGTTTATCTACAGCATGTAAGTGCAATGGTCT
TTTCCTTCCGGACGTCCTCCTCTCCCTCGTTTGCCGACCATTTGACTTGT
TCTTGCTGGATTACTCACACCTTCTTCCTCTTCCCCACCTCCTCCTTTCC
TCACTCTCTCGCTCTCTTCCTGTTCTAGCATTGATGAGTTTGGGAGCTTG
GTGTCGGTCACAGTTACGGTGACTCGCAAAATGATCACGCTTTTTATCAG
CATCATCGCGTACAAGCATGCGGTGCACTGGTGGCAGTGGATGGGCGTAG
CTTCTGTCTTTATCGGTCTTGGTATCAAAGTCTTGTGGGGCGGTGGTGGG
CATGGCCATGGCGCAACAGCAGCAATTGCCAAGTCCAAGACCAAGTAAGA
GAGAGATCCGCGTCCGCACGTATTTCAAACCACAGCCATCGATTTGTTGC
TGCAGCGGCGACAGTTGCGAGGACATTTATGGACACGCACAAAGATTTGA
TTGGGGGATAAAAAGACTGACGGAATACGCTTTGATGATGGCAAAACAAG
AACAAAACCACGAAATTGTGGCCGCGTGTATGTGTACGGGCTGGGAGAGT
ATTTTTAAAACAGTAATATATACCCACAAGGCACGCACAACAGAAGGACG
ACGAACAAGAAAATTAAACGCACCAAAGACACATTCA
back to top

Coding sequence (CDS) from alignment at scaffold_17:56000..57836-

>mRNA_6769 ID=mRNA_6769|Name=jgi.p|Nanoce1779_2|596269|organism=Nannochloropsis oceanica|type=CDS|length=2520bp|location=Sequence derived from alignment at scaffold_17:56000..57836- (Nannochloropsis oceanica)
CATTGATGAGTTTGGGAGCTTGGTGTCGGTCACAGTTACGGTGACTCGCA
AAATGATCACGCTTTTTATCAGCATCATCGCGTACAAGCATGCGGTGCAC
TGGTGGCAGTGGATGGGCGTAGCTTCTGTCTTTATCGGTCTTGGTATCAA
AGTCTTGTGGGGCGGTGGTGGGCATGGCCATGGCGCAACAGCAGCAATTG
CCAAGTCCAAGACCAAGTAAATGGCGGTGCAAACGAGGCGGCAGTCCATG
GGGGGAAATGCCACTGCCGCGGCCATTGCTGCCAGAAGCATAGGCACTAA
AAAGACTGCCAAGGCACAACCTCATGAGAGCGGAAGCGGGGTCCGATTGT
TGATTAAAGCCTTGGGCATCTATGTTTGCTTCATTTACTGGGGCCTTGTG
CAAGAAAGAGTGACCACCACTGCTTACAAGCCAGCAGCCGATTTGGACGC
CAAGCCCGGCAGGTTCAATGCCATGGCCGCGCTCAACGCCTTCATGGCCG
CTGCCGCCGTGATTGTAGGCTTGATCCTACACCAGTTGACCAAGGGCACC
ACCGCCCCTTTTACCACCTTTTGGCGGCCCGCGTTGAGCAACACTATTGC
ATCCCCAATCGGGTACATGTCGTTGCGAGACATTTCATATCCCCTCCTCA
TTCTGGTGAAGAATTGCAAGCTCTTGCCAGTCATGCTTGTAGGCGCTGTC
GTGAATGGCGTGCGTTACAAGACATATGAATACGTGGCCGTGGCGTTGAT
TTCATGTGGCGTGATGCTATTTATGGTCAAGGGACCTCAAGCCAGTGGTG
AAGGGGGCCGTCACGGCGGGCACTACGACATAAGCGCAAGCTATGCCGTA
GGCGGGCAGAGCAACAAGAAGGTTTCTCCTTTGGAGGCAGCGGTGGCAAG
GGACAATCTTTGGATGATGATCCAGGCGGTTATGGGGATTGTAGCTTCGA
GCTTTACCTTCCAAGAGGTACGGGGCCTTTCCATGGCAGCGACCAATTTA
TTGATTGATGGGTTTACCAATGCGGAGCAGGATCGGATTTACCAGAAGTC
TCGCGTCTCGCCTTATTACATGATGGCCATGGTCAATATCTGGTCGCTCA
TTTTCGCCTCATGTTTTCTGTTGTCGGACTTGGTTTTACGGGAAGATGGA
TCCCAGCTGGCATATACTGTCAGGTTTCTGACAACGTATCCGGCAATCAT
CAGGGATTTGCTCACGTTTAGCTTTTCGAACGCGGTGGGGCAGGTGTTTA
TCTACAGCATCATTGATGAGTTTGGGAGCTTGGTGTCGGTCACAGTTACG
GTGACTCGCAAAATGATCACGCTTTTTATCAGCATCATCGCGTACAAGCA
TGCGGTGCACTGGTGGCAGTGGATGGGCGTAGCTTCTGTCTTTATCGGTC
TTGGTATCAAAGTCTTGTGGGGCGGTGGTGGGCATGGCCATGGCGCAACA
GCAGCAATTGCCAAGTCCAAGACCAAGTAAATGGCGGTGCAAACGAGGCG
GCAGTCCATGGGGGGAAATGCCACTGCCGCGGCCATTGCTGCCAGAAGCA
TAGGCACTAAAAAGACTGCCAAGGCACAACCTCATGAGAGCGGAAGCGGG
GTCCGATTGTTGATTAAAGCCTTGGGCATCTATGTTTGCTTCATTTACTG
GGGCCTTGTGCAAGAAAGAGTGACCACCACTGCTTACAAGCCAGCAGCCG
ATTTGGACGCCAAGCCCGGCAGGTTCAATGCCATGGCCGCGCTCAACGCC
TTCATGGCCGCTGCCGCCGTGATTGTAGGCTTGATCCTACACCAGTTGAC
CAAGGGCACCACCGCCCCTTTTACCACCTTTTGGCGGCCCGCGTTGAGCA
ACACTATTGCATCCCCAATCGGGTACATGTCGTTGCGAGACATTTCATAT
CCCCTCCTCATTCTGGTGAAGAATTGCAAGCTCTTGCCAGTCATGCTTGT
AGGCGCTGTCGTGAATGGCGTGCGTTACAAGACATATGAATACGTGGCCG
TGGCGTTGATTTCATGTGGCGTGATGCTATTTATGGTCAAGGGACCTCAA
GCCAGTGGTGAAGGGGGCCGTCACGGCGGGCACTACGACATAAGCGCAAG
CTATGCCGTAGGCGGGCAGAGCAACAAGAAGGTTTCTCCTTTGGAGGCAG
CGGTGGCAAGGGACAATCTTTGGATGATGATCCAGGCGGTTATGGGGATT
GTAGCTTCGAGCTTTACCTTCCAAGAGGTACGGGGCCTTTCCATGGCAGC
GACCAATTTATTGATTGATGGGTTTACCAATGCGGAGCAGGATCGGATTT
ACCAGAAGTCTCGCGTCTCGCCTTATTACATGATGGCCATGGTCAATATC
TGGTCGCTCATTTTCGCCTCATGTTTTCTGTTGTCGGACTTGGTTTTACG
GGAAGATGGATCCCAGCTGGCATATACTGTCAGGTTTCTGACAACGTATC
CGGCAATCATCAGGGATTTGCTCACGTTTAGCTTTTCGAACGCGGTGGGG
CAGGTGTTTATCTACAGCAT
back to top
Synonyms
Publications