jgi.p|Nanoce1779_2|631754, mRNA_6768 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|631754
Unique NamemRNA_6768
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1366
Alignment locationscaffold_17:54612..55977 +

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Properties
Property NameValue
TranscriptId631840
TrackFilteredModels2
ProteinId631754
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:54612..55977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631754gene_6768Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631754mRNA_6768-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6768CDS_6768Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6768 ID=mRNA_6768|Name=jgi.p|Nanoce1779_2|631754|organism=Nannochloropsis oceanica|type=mRNA|length=1366bp
GGAGGGGGGGAAGGTCCACGCAAACGCCGCCAGAACGCGGTGATGGCCAT
GGTGGGTGCAGGAGCAGTAGCTGCAGCCAAGGAGAAGGACGCAGAGGGAG
GGCGAAAAGAGGAGAGGGAGTATAAACGACGATGGCTCAAGGCGTTGGAA
TGCACGGTGTGTATGGAGCCGCTTTGTACGGCTGCCCATATCTCATGTGG
GCATATCGCGTGCTTTACCTGCATTCATCGGCGGTTTGCGCATCAGAGTT
TCGAGGATGGGAGTGCTTATGGCTTTCAGGAACGCAAACGCCTGTGTCCG
ACTTGCCGCAAGGACATTTTCTTCATGAGCCGGGATGTGAAAATGGATGA
GTTGGTCGAAGAGTCCATGAGTAATGACGCGGATATGATGGCACCATGCG
AGCGGATGGTGTGGGAGGAACGGAAGCGAGATGGACTGGCCCTAGCGAGG
TACTACGAAGCGAAGCTTTGCAACAACCCCCAGCAATTTATCCACAGAAA
AAAGGATGTGATGATCAAGGCTGTGATAAGGGCGATACAGCCCTTTGTTG
GAGAGGGGGGAGGAAGAGGAGGGGATGAGGTCGGAGGTCGGGGGAGGGGC
GCGGTTTGTCACGTATGTCGGCAGAGAGTAGAGGGAGGGAAGGAGGGAGG
GTATGAAGCGACTTGGAGCTTGCCAGCGGCGCAGGGATTCAAGCCGATCC
CGTCGTCGGCGACTGTGCATTTGGAGTGTTTGCGGGATTCGGCTTGCAAG
GCAATTAGGAAGGGCTTGTCACCTGAGGGGATGGTTTCGTTATCCGTTCG
TCTAGATGTCCAAAGTCTGTTCGTGGAAGAGGAGGGAGGGCTGGAGGGCT
TCAGGAAGAGAAAGATTTATCAGGTGCTGAGTGAGGAGCGACAGGACTAC
CCCTGGTGGGTGGATGGGAAGATCAAACTTCAAATTCTAACCAACAGAAG
GATACAGCTCGTACCACTCCCGGTAGCCTTTGCTGTTGCTCGAGGGTCGG
GGAGCACCATTGGGATAGCATCTGGGGCCTCTGCGGCCTCTTCCGTCGTA
CACAATTCCTCAGGCACAGCTGATGCGGCGGTGGCTGCGGCGCCGCAACG
TAGGACACCTCGGCAGCCCCAACAACAACCGCACCAGGAGCAACAGCAAG
AGCAGCAGCAGCCACCTCGAAGGCTTGTGTTGGATGTGGACGACTGAGGA
AGGACGGGAGAAGGAGGAAGGGAAGAAGGGAGACAGAAAGTGGAAAATAC
AGATATGAATGTATAAATAAGATAAATACATAAAGAACCAACGAGAAGAA
TATGTACAAGAGGGCAAAGAGACACGCAAATCGATAACTCACAAAAACAC
AAGACAAAAGCAAGAC
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protein sequence of jgi.p|Nanoce1779_2|631754

>mRNA_6768-protein ID=mRNA_6768-protein|Name=jgi.p|Nanoce1779_2|631754|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp
MAMVGAGAVAAAKEKDAEGGRKEEREYKRRWLKALECTVCMEPLCTAAHI
SCGHIACFTCIHRRFAHQSFEDGSAYGFQERKRLCPTCRKDIFFMSRDVK
MDELVEESMSNDADMMAPCERMVWEERKRDGLALARYYEAKLCNNPQQFI
HRKKDVMIKAVIRAIQPFVGEGGGRGGDEVGGRGRGAVCHVCRQRVEGGK
EGGYEATWSLPAAQGFKPIPSSATVHLECLRDSACKAIRKGLSPEGMVSL
SVRLDVQSLFVEEEGGLEGFRKRKIYQVLSEERQDYPWWVDGKIKLQILT
NRRIQLVPLPVAFAVARGSGSTIGIASGASAASSVVHNSSGTADAAVAAA
PQRRTPRQPQQQPHQEQQQEQQQPPRRLVLDVDD*
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mRNA from alignment at scaffold_17:54612..55977+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6768 ID=mRNA_6768|Name=jgi.p|Nanoce1779_2|631754|organism=Nannochloropsis oceanica|type=mRNA|length=1366bp|location=Sequence derived from alignment at scaffold_17:54612..55977+ (Nannochloropsis oceanica)
GGAGGGGGGGAAGGTCCACGCAAACGCCGCCAGAACGCGGTGATGGCCAT
GGTGGGTGCAGGAGCAGTAGCTGCAGCCAAGGAGAAGGACGCAGAGGGAG
GGCGAAAAGAGGAGAGGGAGTATAAACGACGATGGCTCAAGGCGTTGGAA
TGCACGGTGTGTATGGAGCCGCTTTGTACGGCTGCCCATATCTCATGTGG
GCATATCGCGTGCTTTACCTGCATTCATCGGCGGTTTGCGCATCAGAGTT
TCGAGGATGGGAGTGCTTATGGCTTTCAGGAACGCAAACGCCTGTGTCCG
ACTTGCCGCAAGGACATTTTCTTCATGAGCCGGGATGTGAAAATGGATGA
GTTGGTCGAAGAGTCCATGAGTAATGACGCGGATATGATGGCACCATGCG
AGCGGATGGTGTGGGAGGAACGGAAGCGAGATGGACTGGCCCTAGCGAGG
TACTACGAAGCGAAGCTTTGCAACAACCCCCAGCAATTTATCCACAGAAA
AAAGGATGTGATGATCAAGGCTGTGATAAGGGCGATACAGCCCTTTGTTG
GAGAGGGGGGAGGAAGAGGAGGGGATGAGGTCGGAGGTCGGGGGAGGGGC
GCGGTTTGTCACGTATGTCGGCAGAGAGTAGAGGGAGGGAAGGAGGGAGG
GTATGAAGCGACTTGGAGCTTGCCAGCGGCGCAGGGATTCAAGCCGATCC
CGTCGTCGGCGACTGTGCATTTGGAGTGTTTGCGGGATTCGGCTTGCAAG
GCAATTAGGAAGGGCTTGTCACCTGAGGGGATGGTTTCGTTATCCGTTCG
TCTAGATGTCCAAAGTCTGTTCGTGGAAGAGGAGGGAGGGCTGGAGGGCT
TCAGGAAGAGAAAGATTTATCAGGTGCTGAGTGAGGAGCGACAGGACTAC
CCCTGGTGGGTGGATGGGAAGATCAAACTTCAAATTCTAACCAACAGAAG
GATACAGCTCGTACCACTCCCGGTAGCCTTTGCTGTTGCTCGAGGGTCGG
GGAGCACCATTGGGATAGCATCTGGGGCCTCTGCGGCCTCTTCCGTCGTA
CACAATTCCTCAGGCACAGCTGATGCGGCGGTGGCTGCGGCGCCGCAACG
TAGGACACCTCGGCAGCCCCAACAACAACCGCACCAGGAGCAACAGCAAG
AGCAGCAGCAGCCACCTCGAAGGCTTGTGTTGGATGTGGACGACTGAGGA
AGGACGGGAGAAGGAGGAAGGGAAGAAGGGAGACAGAAAGTGGAAAATAC
AGATATGAATGTATAAATAAGATAAATACATAAAGAACCAACGAGAAGAA
TATGTACAAGAGGGCAAAGAGACACGCAAATCGATAACTCACAAAAACAC
AAGACAAAAGCAAGAC
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Coding sequence (CDS) from alignment at scaffold_17:54612..55977+

>mRNA_6768 ID=mRNA_6768|Name=jgi.p|Nanoce1779_2|631754|organism=Nannochloropsis oceanica|type=CDS|length=1155bp|location=Sequence derived from alignment at scaffold_17:54612..55977+ (Nannochloropsis oceanica)
ATGGCCATGGTGGGTGCAGGAGCAGTAGCTGCAGCCAAGGAGAAGGACGC
AGAGGGAGGGCGAAAAGAGGAGAGGGAGTATAAACGACGATGGCTCAAGG
CGTTGGAATGCACGGTGTGTATGGAGCCGCTTTGTACGGCTGCCCATATC
TCATGTGGGCATATCGCGTGCTTTACCTGCATTCATCGGCGGTTTGCGCA
TCAGAGTTTCGAGGATGGGAGTGCTTATGGCTTTCAGGAACGCAAACGCC
TGTGTCCGACTTGCCGCAAGGACATTTTCTTCATGAGCCGGGATGTGAAA
ATGGATGAGTTGGTCGAAGAGTCCATGAGTAATGACGCGGATATGATGGC
ACCATGCGAGCGGATGGTGTGGGAGGAACGGAAGCGAGATGGACTGGCCC
TAGCGAGGTACTACGAAGCGAAGCTTTGCAACAACCCCCAGCAATTTATC
CACAGAAAAAAGGATGTGATGATCAAGGCTGTGATAAGGGCGATACAGCC
CTTTGTTGGAGAGGGGGGAGGAAGAGGAGGGGATGAGGTCGGAGGTCGGG
GGAGGGGCGCGGTTTGTCACGTATGTCGGCAGAGAGTAGAGGGAGGGAAG
GAGGGAGGGTATGAAGCGACTTGGAGCTTGCCAGCGGCGCAGGGATTCAA
GCCGATCCCGTCGTCGGCGACTGTGCATTTGGAGTGTTTGCGGGATTCGG
CTTGCAAGGCAATTAGGAAGGGCTTGTCACCTGAGGGGATGGTTTCGTTA
TCCGTTCGTCTAGATGTCCAAAGTCTGTTCGTGGAAGAGGAGGGAGGGCT
GGAGGGCTTCAGGAAGAGAAAGATTTATCAGGTGCTGAGTGAGGAGCGAC
AGGACTACCCCTGGTGGGTGGATGGGAAGATCAAACTTCAAATTCTAACC
AACAGAAGGATACAGCTCGTACCACTCCCGGTAGCCTTTGCTGTTGCTCG
AGGGTCGGGGAGCACCATTGGGATAGCATCTGGGGCCTCTGCGGCCTCTT
CCGTCGTACACAATTCCTCAGGCACAGCTGATGCGGCGGTGGCTGCGGCG
CCGCAACGTAGGACACCTCGGCAGCCCCAACAACAACCGCACCAGGAGCA
ACAGCAAGAGCAGCAGCAGCCACCTCGAAGGCTTGTGTTGGATGTGGACG
ACTGA
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Synonyms
Publications