jgi.p|Nanoce1779_2|596255, mRNA_6766 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596255
Unique Name	mRNA_6766
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2041
Alignment location	scaffold_17:47400..49440 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596341
Track	FilteredModels2
ProteinId	596255

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:47400..49440 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596255	gene_6766	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596255	mRNA_6766-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6766	CDS_6766	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:47400..49440+
coding sequence from alignment at scaffold_17:47400..49440+

mRNA sequence

>mRNA_6766 ID=mRNA_6766|Name=jgi.p|Nanoce1779_2|596255|organism=Nannochloropsis oceanica|type=mRNA|length=2041bp
AGAGGACGCTCTCCTACACTCCTGTGTACATATTGTGGGTATATAAATAT
ATATATATATTTATTTATATCAGAATGTGAGCGAGAGCGGTGTGGGAGAA
TCGAGCGCAACGGGCCGGGTACGCTCCAGTTGGCTGCCGTCTTTGCGGGC
AGACGCTACCTGAGGCGAAGAAAACGAATGCCCCCCCCAAAAGTACTGGG
ATTCCTTAGGGCTGGACGTGAAATCCTAGCATGCGTTTGGTCGCCTCGAG
GACATCGGCATAACTCATAACTCTCCAACCTCCCCCCGACACAGCAACCA
ACCCTTCCCCAAAAACCCGAAGCAACGGGATCACTTTCTCATCGAATCCA
TCTCCCTGCATGCACCAGAGATGCTGGCTATCTCAACACAGGATGCAAGG
ACAGCCCATTCACGTTGCTGCTGAACACACCTGAAGAACGTTATACACTG
TGAGTCCCATCGGACGCTGCAGAATGGAGAGCCTGACGCGGGCTCACTTA
CTCCCTGCTAACACTGTGATGGAACTTCCCCTGCTGATTCTGCCCCAAGT
CGTGCTTTTTCCGGGTGAGACGTTGCCATTACGACTCTGGAAACTTCACC
ACATCCGTCTTGTCCTCGCGATTGCTTCGGCACAACGAGGGGGTCAAGCA
GCCTTTCTCGGCATTCTCAACGCGCGTTTTGAGTCCGGCCGAGGCACAGC
GAGAGTGGGTTGCACATGCGAACTTGTCGAGATGGAATCAGAATGGGATG
GCCACAGCGCATTTGTTGTTCAGACACGGGGCCGTCAACGGTTTCAATTT
CTAGACCTCGATGGAGATCGGAATATGGAGACGCGTCATGGAGTCCCACA
CGCTCATGTCCGCATTCTCCCCGAGGACTGCATCATAGCACCACCGCGCT
TGCCACAATGGCAAAGACCCCTGAGTACGGCAGCCATCAAGCAACACCAA
TCAATGTACTGGTTTCGATCGAGCTTTTTATATGCTCCCAATTTGGTGCA
GAAAGCACAGGGCATCATCCAATCGGTGGCGGCTTGGGAGGGGATTATGG
GTGCGTCCGGTTTGGCATTCACGCGCTTGCTGGAGAGCCAAGAAGGAGAA
GGCGAAAGGCACGGCAGAGGGGGGGAGGACATTGCAGGTTTGACGGTGGA
ACCGGTGGCGTTTTCATTTCGCTTGGCTGCCAATTTACCACTTGACGACA
TAGCACGACAGGAGTTGCTGTCGATGGAATCAGCTGTGTACAGGCTTCGA
AAAGAGATCGAATTACTGAAAAACACAGCGGAACGCAGGCTTTGCTGCGC
GGGATGCGATAATCCCATGGCGAGCAAAGATGCCGTTTTTAGCGTGCCTG
GTGCGGAGGGTACGGTGGGGGCGTACAGTAATCCTGCGGGAATCGTGCAC
CAGACGTTGACGCTGCGAGAGCTGCTGAAAGGGGCAGATGTGGGGGAAGA
GGCAGTAGCGTTGGAAGGGGAGCCCGAGAGGGACAATTCGTGGTTTAAAG
GGTATGCGTGGACGATTGCTTATTGTTGGCGATGCAGCTTACATTTGGGC
TGGCTGTTTACATTTTGTGGTGAATCGAATGAAGGGGAAGGGGTGCCTTT
GGCGCGATTTTGGGGAATGCGGCGACCAGCTTTAAAGGATGAGGCGGTCA
AATTTGAGGAGGAGGGGTTTTAGGCCTGGTTGGGGGGGAAATGGAGGAGT
GAATGGATAATGAGACTCTTCTCCGCTTTCCACGAGGGGAATGGCGAGGA
CCCAACATCATGTGATGGCGACCTTCGGAATTGGACCCCTTTTCCGCGTG
AATATAGTTGCGGAGGAAGGAGTGGAGGAGATTGAAAGAGAGTATTGAAA
AGGAGACGATGAAGGGATACACACAAACACAGAAATAAAAGAACGTAGTT
GTAGAGTGGCAAAGAAAGGAACATGATGCTTGAACAGAGCGAACGAAATA
GGATTGGATGTTTATAGTGAGACACCCCCCCCGAGCGACTAACGTCACGA
AGACATGAAGAGGCTTGCAGAAAATCGATGAGAAGTACAAT

protein sequence of jgi.p|Nanoce1779_2|596255

>mRNA_6766-protein ID=mRNA_6766-protein|Name=jgi.p|Nanoce1779_2|596255|organism=Nannochloropsis oceanica|type=polypeptide|length=400bp
MESLTRAHLLPANTVMELPLLILPQVVLFPGETLPLRLWKLHHIRLVLAI
ASAQRGGQAAFLGILNARFESGRGTARVGCTCELVEMESEWDGHSAFVVQ
TRGRQRFQFLDLDGDRNMETRHGVPHAHVRILPEDCIIAPPRLPQWQRPL
STAAIKQHQSMYWFRSSFLYAPNLVQKAQGIIQSVAAWEGIMGASGLAFT
RLLESQEGEGERHGRGGEDIAGLTVEPVAFSFRLAANLPLDDIARQELLS
MESAVYRLRKEIELLKNTAERRLCCAGCDNPMASKDAVFSVPGAEGTVGA
YSNPAGIVHQTLTLRELLKGADVGEEAVALEGEPERDNSWFKGYAWTIAY
CWRCSLHLGWLFTFCGESNEGEGVPLARFWGMRRPALKDEAVKFEEEGF*

mRNA from alignment at scaffold_17:47400..49440+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6766 ID=mRNA_6766|Name=jgi.p|Nanoce1779_2|596255|organism=Nannochloropsis oceanica|type=mRNA|length=2041bp|location=Sequence derived from alignment at scaffold_17:47400..49440+ (Nannochloropsis oceanica)
AGAGGACGCTCTCCTACACTCCTGTGTACATATTGTGGGTATATAAATAT
ATATATATATTTATTTATATCAGAATGTGAGCGAGAGCGGTGTGGGAGAA
TCGAGCGCAACGGGCCGGGTACGCTCCAGTTGGCTGCCGTCTTTGCGGGC
AGACGCTACCTGAGGCGAAGAAAACGAATGCCCCCCCCAAAAGTACTGGG
ATTCCTTAGGGCTGGACGTGAAATCCTAGCATGCGTTTGGTCGCCTCGAG
GACATCGGCATAACTCATAACTCTCCAACCTCCCCCCGACACAGCAACCA
ACCCTTCCCCAAAAACCCGAAGCAACGGGATCACTTTCTCATCGAATCCA
TCTCCCTGCATGCACCAGAGATGCTGGCTATCTCAACACAGGATGCAAGG
ACAGCCCATTCACGTTGCTGCTGAACACACCTGAAGAACGTTATACACTG
TGAGTCCCATCGGACGCTGCAGAATGGAGAGCCTGACGCGGGCTCACTTA
CTCCCTGCTAACACTGTGATGGAACTTCCCCTGCTGATTCTGCCCCAAGT
CGTGCTTTTTCCGGGTGAGACGTTGCCATTACGACTCTGGAAACTTCACC
ACATCCGTCTTGTCCTCGCGATTGCTTCGGCACAACGAGGGGGTCAAGCA
GCCTTTCTCGGCATTCTCAACGCGCGTTTTGAGTCCGGCCGAGGCACAGC
GAGAGTGGGTTGCACATGCGAACTTGTCGAGATGGAATCAGAATGGGATG
GCCACAGCGCATTTGTTGTTCAGACACGGGGCCGTCAACGGTTTCAATTT
CTAGACCTCGATGGAGATCGGAATATGGAGACGCGTCATGGAGTCCCACA
CGCTCATGTCCGCATTCTCCCCGAGGACTGCATCATAGCACCACCGCGCT
TGCCACAATGGCAAAGACCCCTGAGTACGGCAGCCATCAAGCAACACCAA
TCAATGTACTGGTTTCGATCGAGCTTTTTATATGCTCCCAATTTGGTGCA
GAAAGCACAGGGCATCATCCAATCGGTGGCGGCTTGGGAGGGGATTATGG
GTGCGTCCGGTTTGGCATTCACGCGCTTGCTGGAGAGCCAAGAAGGAGAA
GGCGAAAGGCACGGCAGAGGGGGGGAGGACATTGCAGGTTTGACGGTGGA
ACCGGTGGCGTTTTCATTTCGCTTGGCTGCCAATTTACCACTTGACGACA
TAGCACGACAGGAGTTGCTGTCGATGGAATCAGCTGTGTACAGGCTTCGA
AAAGAGATCGAATTACTGAAAAACACAGCGGAACGCAGGCTTTGCTGCGC
GGGATGCGATAATCCCATGGCGAGCAAAGATGCCGTTTTTAGCGTGCCTG
GTGCGGAGGGTACGGTGGGGGCGTACAGTAATCCTGCGGGAATCGTGCAC
CAGACGTTGACGCTGCGAGAGCTGCTGAAAGGGGCAGATGTGGGGGAAGA
GGCAGTAGCGTTGGAAGGGGAGCCCGAGAGGGACAATTCGTGGTTTAAAG
GGTATGCGTGGACGATTGCTTATTGTTGGCGATGCAGCTTACATTTGGGC
TGGCTGTTTACATTTTGTGGTGAATCGAATGAAGGGGAAGGGGTGCCTTT
GGCGCGATTTTGGGGAATGCGGCGACCAGCTTTAAAGGATGAGGCGGTCA
AATTTGAGGAGGAGGGGTTTTAGGCCTGGTTGGGGGGGAAATGGAGGAGT
GAATGGATAATGAGACTCTTCTCCGCTTTCCACGAGGGGAATGGCGAGGA
CCCAACATCATGTGATGGCGACCTTCGGAATTGGACCCCTTTTCCGCGTG
AATATAGTTGCGGAGGAAGGAGTGGAGGAGATTGAAAGAGAGTATTGAAA
AGGAGACGATGAAGGGATACACACAAACACAGAAATAAAAGAACGTAGTT
GTAGAGTGGCAAAGAAAGGAACATGATGCTTGAACAGAGCGAACGAAATA
GGATTGGATGTTTATAGTGAGACACCCCCCCCGAGCGACTAACGTCACGA
AGACATGAAGAGGCTTGCAGAAAATCGATGAGAAGTACAAT

Coding sequence (CDS) from alignment at scaffold_17:47400..49440+

>mRNA_6766 ID=mRNA_6766|Name=jgi.p|Nanoce1779_2|596255|organism=Nannochloropsis oceanica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_17:47400..49440+ (Nannochloropsis oceanica)
ATGGAGAGCCTGACGCGGGCTCACTTACTCCCTGCTAACACTGTGATGGA
ACTTCCCCTGCTGATTCTGCCCCAAGTCGTGCTTTTTCCGGGTGAGACGT
TGCCATTACGACTCTGGAAACTTCACCACATCCGTCTTGTCCTCGCGATT
GCTTCGGCACAACGAGGGGGTCAAGCAGCCTTTCTCGGCATTCTCAACGC
GCGTTTTGAGTCCGGCCGAGGCACAGCGAGAGTGGGTTGCACATGCGAAC
TTGTCGAGATGGAATCAGAATGGGATGGCCACAGCGCATTTGTTGTTCAG
ACACGGGGCCGTCAACGGTTTCAATTTCTAGACCTCGATGGAGATCGGAA
TATGGAGACGCGTCATGGAGTCCCACACGCTCATGTCCGCATTCTCCCCG
AGGACTGCATCATAGCACCACCGCGCTTGCCACAATGGCAAAGACCCCTG
AGTACGGCAGCCATCAAGCAACACCAATCAATGTACTGGTTTCGATCGAG
CTTTTTATATGCTCCCAATTTGGTGCAGAAAGCACAGGGCATCATCCAAT
CGGTGGCGGCTTGGGAGGGGATTATGGGTGCGTCCGGTTTGGCATTCACG
CGCTTGCTGGAGAGCCAAGAAGGAGAAGGCGAAAGGCACGGCAGAGGGGG
GGAGGACATTGCAGGTTTGACGGTGGAACCGGTGGCGTTTTCATTTCGCT
TGGCTGCCAATTTACCACTTGACGACATAGCACGACAGGAGTTGCTGTCG
ATGGAATCAGCTGTGTACAGGCTTCGAAAAGAGATCGAATTACTGAAAAA
CACAGCGGAACGCAGGCTTTGCTGCGCGGGATGCGATAATCCCATGGCGA
GCAAAGATGCCGTTTTTAGCGTGCCTGGTGCGGAGGGTACGGTGGGGGCG
TACAGTAATCCTGCGGGAATCGTGCACCAGACGTTGACGCTGCGAGAGCT
GCTGAAAGGGGCAGATGTGGGGGAAGAGGCAGTAGCGTTGGAAGGGGAGC
CCGAGAGGGACAATTCGTGGTTTAAAGGGTATGCGTGGACGATTGCTTAT
TGTTGGCGATGCAGCTTACATTTGGGCTGGCTGTTTACATTTTGTGGTGA
ATCGAATGAAGGGGAAGGGGTGCCTTTGGCGCGATTTTGGGGAATGCGGC
GACCAGCTTTAAAGGATGAGGCGGTCAAATTTGAGGAGGAGGGGTTTTAG

Synonyms

Publications