jgi.p|Nanoce1779_2|596250, mRNA_6764 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596250
Unique Name	mRNA_6764
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1332
Alignment location	scaffold_17:44367..45904 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596336
Track	FilteredModels2
ProteinId	596250

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:44367..45904 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596250	gene_6764	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596250	mRNA_6764-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6764	CDS_6764	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:44367..45904+
coding sequence from alignment at scaffold_17:44367..45904+

mRNA sequence

>mRNA_6764 ID=mRNA_6764|Name=jgi.p|Nanoce1779_2|596250|organism=Nannochloropsis oceanica|type=mRNA|length=1332bp
ACAGGAATATTCTAATCCTTTCCAGCGCACGTAAAAGATAATGCCGCCAC
GCCGCATCCCTCCCCGCCGTGCCAGCGAGGGTTCCATTGCAGGTGGCATC
TCACAGACCGGGCAGGTGGCTTCCCGCGCTTGGCAGAACCCGCTGATGCG
CAATACTTTCATCGGGATAGCTACAGTGGTGGGGGCCTTGGCAGTCTGGA
TGGGGCTCTTGTTGAATCCTTCCTACCCTGTCCCGCCCAAGGGTATCGTT
CTTGTCACAGGCACATCCACAGGCATCGGGCGGGAAGTGGTGAATATGCT
GGCTAAAAGCGGGTACCACGTATTTGCAGGCGTGCGTCGCCAGGAGAGTG
CCACTGAATGGAATACAATCAGCAAGTGGCGACAGCACCAAATCCACCCC
GTGCTGCTAGACGTGACGCTTAAGGAGCACATTGACAATGTAGTGACGGA
GATTAAGCGCTACTCGGGCGAGCACGATGACATGAAGTTTGCGGGCTTGG
TCAATAATGCAGGCATCGGATGCCACCGGCCTGTAGAACACCACGACATG
GACGACGTACGGAACATGTTTGAGACGAATCTTTTGGGTCCGCTGTATCT
GACGCAGAAACTGCTTCCACTCATCCGTCGAGACAAAGGGCGTATCATTT
TCACCTCATCCCTGGCGGGGCGCATCACGCAGCCGAAGGAAGGGATTTAT
TCCGCGACCAAGAGCGGCGTGGAGGCCGTTGGAGATGCCCTGCGACAGGA
ACTTCTTCCATACGAATGCTCGGTGAGTTTGGTGGAGCCGGGTTTCGTCA
TGACTCCGATTTTGAGCAAGATTCTAGATTCGGAAGAAGTGGCGAATTCC
ACCACGGCAGCCCAGACCTATCCATGGTACTATACCAAGAAGTACTTCGA
CATATTCAATTTCGGGATCAACCACGCTGGTGACGTTTCTCGGGTAGCTC
GCCAAGTTTTAGCGGCTCTAACAGATATCCGCCCAAAAACACGCTACGCG
ACGACGAACGTCTTGATGGTGCCAACATGGCTGGCTATTCAAGCTAAGCA
GTTGATTCCCGATCGTTTGATGGACAAAATTTTAACGCAATAAAGAGGCA
AAAGCGAGCGCGCAGCGACGGAGGAAAGGAGAATGGGAACGAAAATTACC
CACCGGAAGATTTTAAAAAACGATAGAAAGCAAGGCTTCATTTTGCATCA
TTGCTTCTCCACCAAAAATTACTTCACCAAGAAAAAATGGATGCGAGAGC
GATCAAAACAATACAGCAACGGCCTGATAAGAGAAAAAAGAAAGAATACA
AGACAACAAGGCAACGAAAACATAAAAGAAAC

protein sequence of jgi.p|Nanoce1779_2|596250

>mRNA_6764-protein ID=mRNA_6764-protein|Name=jgi.p|Nanoce1779_2|596250|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MPPRRIPPRRASEGSIAGGISQTGQVASRAWQNPLMRNTFIGIATVVGAL
AVWMGLLLNPSYPVPPKGIVLVTGTSTGIGREVVNMLAKSGYHVFAGVRR
QESATEWNTISKWRQHQIHPVLLDVTLKEHIDNVVTEIKRYSGEHDDMKF
AGLVNNAGIGCHRPVEHHDMDDVRNMFETNLLGPLYLTQKLLPLIRRDKG
RIIFTSSLAGRITQPKEGIYSATKSGVEAVGDALRQELLPYECSVSLVEP
GFVMTPILSKILDSEEVANSTTAAQTYPWYYTKKYFDIFNFGINHAGDVS
RVARQVLAALTDIRPKTRYATTNVLMVPTWLAIQAKQLIPDRLMDKILTQ
*

mRNA from alignment at scaffold_17:44367..45904+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6764 ID=mRNA_6764|Name=jgi.p|Nanoce1779_2|596250|organism=Nannochloropsis oceanica|type=mRNA|length=1538bp|location=Sequence derived from alignment at scaffold_17:44367..45904+ (Nannochloropsis oceanica)
ACAGGAATATTCTAATCCTTTCCAGCGCACGTAAAAGATAATGCCGCCAC
GCCGCATCCCTCCCCGCCGTGCCAGCGAGGGTTCCATTGCAGGTGGCATC
TCACAGACCGGGCAGGTGGCTTCCCGCGCTTGGCAGAACCCGCTGATGCG
CAATACTTTCATCGGGATAGCTACAGTGGTGGGGGCCTTGGCAGTCTGGA
TGGGGCTCTTGTTGAATCCTTCCTACCCTGTCCCGCCCAAGGGTATCGTT
CTTGTCACAGGTCAGCGAGGGCTGGGAGGGTTAGGCAGAGAAGTTAGGAA
AAAATCAATGGATTTGTCCTGGCGTAGCTAGGGCTCTCGTTGGCATCCAG
ATTCAACCATACGAAGCAGACTGTCCGGGTTGCATGCATGGTGTCACTTT
CACGATGCATTGTCAAGAGGGATCTCAACCCGAATCTTCCGATTTTTTTT
CTTAATTCTCTTTCAGGCACATCCACAGGCATCGGGCGGGAAGTGGTGAA
TATGCTGGCTAAAAGCGGGTACCACGTATTTGCAGGCGTGCGTCGCCAGG
AGAGTGCCACTGAATGGAATACAATCAGCAAGTGGCGACAGCACCAAATC
CACCCCGTGCTGCTAGACGTGACGCTTAAGGAGCACATTGACAATGTAGT
GACGGAGATTAAGCGCTACTCGGGCGAGCACGATGACATGAAGTTTGCGG
GCTTGGTCAATAATGCAGGCATCGGATGCCACCGGCCTGTAGAACACCAC
GACATGGACGACGTACGGAACATGTTTGAGACGAATCTTTTGGGTCCGCT
GTATCTGACGCAGAAACTGCTTCCACTCATCCGTCGAGACAAAGGGCGTA
TCATTTTCACCTCATCCCTGGCGGGGCGCATCACGCAGCCGAAGGAAGGG
ATTTATTCCGCGACCAAGAGCGGCGTGGAGGCCGTTGGAGATGCCCTGCG
ACAGGAACTTCTTCCATACGAATGCTCGGTGAGTTTGGTGGAGCCGGGTT
TCGTCATGACTCCGATTTTGAGCAAGATTCTAGATTCGGAAGAAGTGGCG
AATTCCACCACGGCAGCCCAGACCTATCCATGGTACTATACCAAGAAGTA
CTTCGACATATTCAATTTCGGGATCAACCACGCTGGTGACGTTTCTCGGG
TAGCTCGCCAAGTTTTAGCGGCTCTAACAGATATCCGCCCAAAAACACGC
TACGCGACGACGAACGTCTTGATGGTGCCAACATGGCTGGCTATTCAAGC
TAAGCAGTTGATTCCCGATCGTTTGATGGACAAAATTTTAACGCAATAAA
GAGGCAAAAGCGAGCGCGCAGCGACGGAGGAAAGGAGAATGGGAACGAAA
ATTACCCACCGGAAGATTTTAAAAAACGATAGAAAGCAAGGCTTCATTTT
GCATCATTGCTTCTCCACCAAAAATTACTTCACCAAGAAAAAATGGATGC
GAGAGCGATCAAAACAATACAGCAACGGCCTGATAAGAGAAAAAAGAAAG
AATACAAGACAACAAGGCAACGAAAACATAAAAGAAAC

Coding sequence (CDS) from alignment at scaffold_17:44367..45904+

>mRNA_6764 ID=mRNA_6764|Name=jgi.p|Nanoce1779_2|596250|organism=Nannochloropsis oceanica|type=CDS|length=2106bp|location=Sequence derived from alignment at scaffold_17:44367..45904+ (Nannochloropsis oceanica)
ATGCCGCCACGCCGCATCCCTCCCCGCCGTGCCAGCGAGGGTTCCATTGC
AGGTGGCATCTCACAGACCGGGCAGGTGGCTTCCCGCGCTTGGCAGAACC
CGCTGATGCGCAATACTTTCATCGGGATAGCTACAGTGGTGGGGGCCTTG
GCAGTCTGGATGGGGCTCTTGTTGAATCCTTCCTACCCTGTCCCGCCCAA
GGGTATCGTTCTTGTCACAGGCACATCCACAGGCATCGGGCGGGAAGTGG
TGAATATGCTGGCTAAAAGCGGGTACCACGTATTTGCAGGCGTGCGTCGC
CAGGAGAGTGCCACTGAATGGAATACAATCAGCAAGTGGCGACAGCACCA
AATCCACCCCGTGCTGCTAGACGTGACGCTTAAGGAGCACATTGACAATG
TAGTGACGGAGATTAAGCGCTACTCGGGCGAGCACGATGACATGAAGTTT
GCGGGCTTGGTCAATAATGCAGGCATCGGATGCCACCGGCCTGTAGAACA
CCACGACATGGACGACGTACGGAACATGTTTGAGACGAATCTTTTGGGTC
CGCTGTATCTGACGCAGAAACTGCTTCCACTCATCCGTCGAGACAAAGGG
CGTATCATTTTCACCTCATCCCTGGCGGGGCGCATCACGCAGCCGAAGGA
AGGGATTTATTCCGCGACCAAGAGCGGCGTGGAGGCCGTTGGAGATGCCC
TGCGACAGGAACTTCTTCCATACGAATGCTCGGTGAGTTTGGTGGAGCCG
GGTTTCGTCATGACTCCGATTTTGAGCAAGATTCTAGATTCGGAAGAAGT
GGCGAATTCCACCACGGCAGCCCAGACCTATCCATGGTACTATACCAAGA
AGTACTTCGACATATTCAATTTCGGGATCAACCACGCTGGTGACGTTTCT
CGGGTAGCTCGCCAAGTTTTAGCGGCTCTAACAGATATCCGCCCAAAAAC
ACGCTACGCGACGACGAACGTCTTGATGGTGCCAACATGGCTGGCTATTC
AAGCTAAGCAGTTGATTCCCGATCGTTTGATGGACAAAATTTTAACGCAA
TAAATGCCGCCACGCCGCATCCCTCCCCGCCGTGCCAGCGAGGGTTCCAT
TGCAGGTGGCATCTCACAGACCGGGCAGGTGGCTTCCCGCGCTTGGCAGA
ACCCGCTGATGCGCAATACTTTCATCGGGATAGCTACAGTGGTGGGGGCC
TTGGCAGTCTGGATGGGGCTCTTGTTGAATCCTTCCTACCCTGTCCCGCC
CAAGGGTATCGTTCTTGTCACAGGCACATCCACAGGCATCGGGCGGGAAG
TGGTGAATATGCTGGCTAAAAGCGGGTACCACGTATTTGCAGGCGTGCGT
CGCCAGGAGAGTGCCACTGAATGGAATACAATCAGCAAGTGGCGACAGCA
CCAAATCCACCCCGTGCTGCTAGACGTGACGCTTAAGGAGCACATTGACA
ATGTAGTGACGGAGATTAAGCGCTACTCGGGCGAGCACGATGACATGAAG
TTTGCGGGCTTGGTCAATAATGCAGGCATCGGATGCCACCGGCCTGTAGA
ACACCACGACATGGACGACGTACGGAACATGTTTGAGACGAATCTTTTGG
GTCCGCTGTATCTGACGCAGAAACTGCTTCCACTCATCCGTCGAGACAAA
GGGCGTATCATTTTCACCTCATCCCTGGCGGGGCGCATCACGCAGCCGAA
GGAAGGGATTTATTCCGCGACCAAGAGCGGCGTGGAGGCCGTTGGAGATG
CCCTGCGACAGGAACTTCTTCCATACGAATGCTCGGTGAGTTTGGTGGAG
CCGGGTTTCGTCATGACTCCGATTTTGAGCAAGATTCTAGATTCGGAAGA
AGTGGCGAATTCCACCACGGCAGCCCAGACCTATCCATGGTACTATACCA
AGAAGTACTTCGACATATTCAATTTCGGGATCAACCACGCTGGTGACGTT
TCTCGGGTAGCTCGCCAAGTTTTAGCGGCTCTAACAGATATCCGCCCAAA
AACACGCTACGCGACGACGAACGTCTTGATGGTGCCAACATGGCTGGCTA
TTCAAGCTAAGCAGTTGATTCCCGATCGTTTGATGGACAAAATTTTAACG
CAATAA

Synonyms

Publications