jgi.p|Nanoce1779_2|596243, mRNA_6762 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596243
Unique NamemRNA_6762
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length631
Alignment locationscaffold_17:30554..31184 +

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Properties
Property NameValue
TranscriptId596329
TrackFilteredModels2
ProteinId596243
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:30554..31184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596243gene_6762Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596243mRNA_6762-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6762CDS_6762Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6762 ID=mRNA_6762|Name=jgi.p|Nanoce1779_2|596243|organism=Nannochloropsis oceanica|type=mRNA|length=631bp
AGCCAGCAAGCATGCGTCCACAACCCTACTCCCACGTCCTCGTGGCCTTT
CTCCTGTCCCTCCTTGCTGCCTCCACCAATGCCTTCCTGATCCCCACACA
GCGCCTCTCCTCCCTCCCCGCCAGATCAGCAGCAGCACATCCCTGCACCA
CTAAGTCCGCGTCGACACTGAGGATGGTGGTAGAGCCTTCAAGTGTGCTG
CTCATGGAGAGTGGCGGGCCGGCAATGCTGTTAGCGGCGAGTTCATGGGT
GGGCCCGGCCAAGACAATAATTGAGCCCATTCTGGACTTGGGCGGGTTTG
CCTTCTTGGTGCGCATCGTGTTGTCGTGGTACCCCCAGGTAAATCTGAAC
AAGCTGCCCGCCAACATCATCGCCTGGCCCACTGAGCCCTTCCTGCAGGT
GACACGCGTGGTCGTGCCCCCGGCTTTCGGAGTCGACATTAGTCCCATTA
TCTGGTTTGCCTTCCTCAACTTTTTGCGGGAGATTTTGGTCAGTGACCAA
GGCATTCTGACGCTGCTGCAACAGAAGTAAGAAGGATATATGGGGAATGA
AGACCAAACCGGAGAGCGAGTCTCGCATTTCAATTTCATATTTTCAGAAA
CAAAGCAGCCAAACACTTAAAAGCGAGAACA
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protein sequence of jgi.p|Nanoce1779_2|596243

>mRNA_6762-protein ID=mRNA_6762-protein|Name=jgi.p|Nanoce1779_2|596243|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MRPQPYSHVLVAFLLSLLAASTNAFLIPTQRLSSLPARSAAAHPCTTKSA
STLRMVVEPSSVLLMESGGPAMLLAASSWVGPAKTIIEPILDLGGFAFLV
RIVLSWYPQVNLNKLPANIIAWPTEPFLQVTRVVVPPAFGVDISPIIWFA
FLNFLREILVSDQGILTLLQQK*
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mRNA from alignment at scaffold_17:30554..31184+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6762 ID=mRNA_6762|Name=jgi.p|Nanoce1779_2|596243|organism=Nannochloropsis oceanica|type=mRNA|length=631bp|location=Sequence derived from alignment at scaffold_17:30554..31184+ (Nannochloropsis oceanica)
AGCCAGCAAGCATGCGTCCACAACCCTACTCCCACGTCCTCGTGGCCTTT
CTCCTGTCCCTCCTTGCTGCCTCCACCAATGCCTTCCTGATCCCCACACA
GCGCCTCTCCTCCCTCCCCGCCAGATCAGCAGCAGCACATCCCTGCACCA
CTAAGTCCGCGTCGACACTGAGGATGGTGGTAGAGCCTTCAAGTGTGCTG
CTCATGGAGAGTGGCGGGCCGGCAATGCTGTTAGCGGCGAGTTCATGGGT
GGGCCCGGCCAAGACAATAATTGAGCCCATTCTGGACTTGGGCGGGTTTG
CCTTCTTGGTGCGCATCGTGTTGTCGTGGTACCCCCAGGTAAATCTGAAC
AAGCTGCCCGCCAACATCATCGCCTGGCCCACTGAGCCCTTCCTGCAGGT
GACACGCGTGGTCGTGCCCCCGGCTTTCGGAGTCGACATTAGTCCCATTA
TCTGGTTTGCCTTCCTCAACTTTTTGCGGGAGATTTTGGTCAGTGACCAA
GGCATTCTGACGCTGCTGCAACAGAAGTAAGAAGGATATATGGGGAATGA
AGACCAAACCGGAGAGCGAGTCTCGCATTTCAATTTCATATTTTCAGAAA
CAAAGCAGCCAAACACTTAAAAGCGAGAACA
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Coding sequence (CDS) from alignment at scaffold_17:30554..31184+

>mRNA_6762 ID=mRNA_6762|Name=jgi.p|Nanoce1779_2|596243|organism=Nannochloropsis oceanica|type=CDS|length=519bp|location=Sequence derived from alignment at scaffold_17:30554..31184+ (Nannochloropsis oceanica)
ATGCGTCCACAACCCTACTCCCACGTCCTCGTGGCCTTTCTCCTGTCCCT
CCTTGCTGCCTCCACCAATGCCTTCCTGATCCCCACACAGCGCCTCTCCT
CCCTCCCCGCCAGATCAGCAGCAGCACATCCCTGCACCACTAAGTCCGCG
TCGACACTGAGGATGGTGGTAGAGCCTTCAAGTGTGCTGCTCATGGAGAG
TGGCGGGCCGGCAATGCTGTTAGCGGCGAGTTCATGGGTGGGCCCGGCCA
AGACAATAATTGAGCCCATTCTGGACTTGGGCGGGTTTGCCTTCTTGGTG
CGCATCGTGTTGTCGTGGTACCCCCAGGTAAATCTGAACAAGCTGCCCGC
CAACATCATCGCCTGGCCCACTGAGCCCTTCCTGCAGGTGACACGCGTGG
TCGTGCCCCCGGCTTTCGGAGTCGACATTAGTCCCATTATCTGGTTTGCC
TTCCTCAACTTTTTGCGGGAGATTTTGGTCAGTGACCAAGGCATTCTGAC
GCTGCTGCAACAGAAGTAA
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Synonyms
Publications