jgi.p|Nanoce1779_2|573757, mRNA_676 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573757
Unique NamemRNA_676
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2275
Alignment locationscaffold_2:164700..167196 -

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Properties
Property NameValue
TranscriptId573843
TrackFilteredModels2
ProteinId573757
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:164700..167196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573757gene_676Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573757mRNA_676-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_676CDS_676Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_676 ID=mRNA_676|Name=jgi.p|Nanoce1779_2|573757|organism=Nannochloropsis oceanica|type=mRNA|length=2275bp
GTCTACAACATCGACGTAAAAGGTTGGTTGGGTGGGTGCCCGGGAGGAAG
AGGAAGGGGAGGAGCAGGAAGGAGAAGTGGGGAAGGCGTCATGTCCAAGC
CAGCGTGTACAGGACGGTGGTAGCAGTGGAAGGACAACGGTTGCGTGGAA
TGTGCAAGAGGACGCTCTGATTCTTGTCGCATTGCCGGGGTGTAACACCA
CATGTTCCTTCGCCTCGGGCGATCATCAACACTTTCATGTCCTCCTCCGT
GGCGAGCCGCACCGCCAACACAAGCGGTACTAAGGCACCAAACCAACCAC
GCGACAAAGCTGCACCTCGTTCGGATGCTGCCAGACTGAGTACGAGCGAG
AGGACAAGGCAACAAGCCTACACCCAGGGCAGCATCCTCCTCGGCGTCTC
TCTCCTACTGGCCGCTCTTTGGTACCTAAACCCAGAACAGATGCCCATCT
GCCGCAATCAAATACGGCACATTTTACTGCAGACGTGGGAATGGAAGGGC
GATGACGAAGCCTTGAGTGAGGCGGTGGCCCTTTTCCTAAAGTTCAGCAA
AGAGTCGTTGCGAGGACTATCGATTCTTGTCTTTACCATCAGCCTATGTT
TCTTCGGTGGAGCTACCTTCCGAGACATTGATAACTCATCATCCTCCAGT
TTGGTAGACGGCTTGACAAAGGCTCAGCGTCGACTGCTTGGGCTGGACCC
GCTGCCAGATAAGAGCAAAAACTTTTCATCCCTTGATCTTATGAGACAGG
CAACGCCAGTCGGACGAGCCCTCCCCTTATCATCCTCCCCTTTTGCAAGC
TCGTCCTCTGCTTCAAAATCCTCTGCAGACAAAATTCTCACACCTGGCAT
GGGTGGTGATGTATCGTCTGCAGCGTACCTCTCACCCCCACCGTCGTCCT
ATGGTCGCTTCACGCCCACCGGTTCCTCTGGAGGGGGAGGACGGCCACCG
CTGGGAAGGAGAAGCGGTGGTACTTCAGGAGGAAGAAACGGGGGAGGAGG
GGCAACGTTGAGTTTTGGGGAGAGTGCAGGGGAGAAGGTGAGGAATTTGT
TGGACGAGATGTTGCTCTCCCCGGGGTTGGACTCGGTCCCACCGCAGCAG
CAGACTCCTCAAGGAGGCGGCTTCAATGGAATGGGGATGGACGGAGGGCA
GCAGCAGTTTATCAGTAGTGTGCCCATTTCACCAATCACCAAAGAGGTGG
TAGGACCGTACCGAGAATCGCCGTTGGGAGGAAACGGGGGAGGGCTTCTG
GGGGGATCGACGGGATCGCCTGCCGAGCAGTATGATGCGGCTGACTGGCC
TCGAATGCTGCAGAGTCGGGTCGGTGATGGTCTGGACACGTTTAAATTAG
CGCATTACGTGGATAACTTACGCGAGGCTTTGTATGTGGAAATCGTTGAA
CTGCTGACCCGGTTTGAGGCGGCGGTGCGGGCGCTGGAGCGGTGTGGTGT
GCCCTTGGAGTTGTTGCTTGAACAGGTGAAAACATCGCCTTCGGGTTACT
CTCTGGAGGATTTCTTGGGTCAGGCAAGGACGGGAGGATGGGGGAAAGAG
GTGTATGAATACGTAGGATTGAAGCGGGTGTTGGCGGAGGGTGAGAACTG
GACGGATTTGTTCGGGCATGTCTGGAGGAGGCTGGAGGAGCTGGTGGAGG
ACTCGTACTTGAGTGGATATGATTGGTCAAGGGGAGGTATCTTGAGGGAT
CGAAACGTCACAGTAGAGCTTCCGACGGACGCGGACTTGATCATGCATTT
GTTTTTGTGGCGCTGTGATGCAGGGGGAGAGCACCGGCTGCACGAAGGGG
ACAGACCCTTTGTCAAGCAGCACTTTCTGCAGGTGGCCCCCGGCACAGAG
GAAACTTCCCGCACCCTGCGTGGGCGGAATTTGATCATGCGGTACGGGAC
TAGCCTTCCGTATTTCTCCGTGGTGGAGAATGGAACCATCTATCGGATTC
CGAAAGGGAAGGATAATGCCCTTGTGGCCGTTGTGCTGTTTCTGTTCTTG
GCAAGGCGGGATAGGTGGCTTCCAACGTACAATCAGGGCTACCGACGCTT
GCTCGAGAACGTCTTCGGGTCGGTGGTACACCCTGGGAGTGATGGTGTAG
GTAAGTCTAAAGGAAAAGGGGGGAAAAGAGTAGGAGGGGTAAGAGGAGGA
GGAAGACCGCTGGCCTTGACTGGCGGAGGGAGACTGTGAAGCGAGAGGGA
GTGAGCACCAAAGCAGAGGAATGCAACACAAGTTTAGGTGAAAATCAAAG
TCAAGGAGATCAATATCTACGCTGA
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protein sequence of jgi.p|Nanoce1779_2|573757

>mRNA_676-protein ID=mRNA_676-protein|Name=jgi.p|Nanoce1779_2|573757|organism=Nannochloropsis oceanica|type=polypeptide|length=651bp
MSSSVASRTANTSGTKAPNQPRDKAAPRSDAARLSTSERTRQQAYTQGSI
LLGVSLLLAALWYLNPEQMPICRNQIRHILLQTWEWKGDDEALSEAVALF
LKFSKESLRGLSILVFTISLCFFGGATFRDIDNSSSSSLVDGLTKAQRRL
LGLDPLPDKSKNFSSLDLMRQATPVGRALPLSSSPFASSSSASKSSADKI
LTPGMGGDVSSAAYLSPPPSSYGRFTPTGSSGGGGRPPLGRRSGGTSGGR
NGGGGATLSFGESAGEKVRNLLDEMLLSPGLDSVPPQQQTPQGGGFNGMG
MDGGQQQFISSVPISPITKEVVGPYRESPLGGNGGGLLGGSTGSPAEQYD
AADWPRMLQSRVGDGLDTFKLAHYVDNLREALYVEIVELLTRFEAAVRAL
ERCGVPLELLLEQVKTSPSGYSLEDFLGQARTGGWGKEVYEYVGLKRVLA
EGENWTDLFGHVWRRLEELVEDSYLSGYDWSRGGILRDRNVTVELPTDAD
LIMHLFLWRCDAGGEHRLHEGDRPFVKQHFLQVAPGTEETSRTLRGRNLI
MRYGTSLPYFSVVENGTIYRIPKGKDNALVAVVLFLFLARRDRWLPTYNQ
GYRRLLENVFGSVVHPGSDGVGKSKGKGGKRVGGVRGGGRPLALTGGGRL
*
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mRNA from alignment at scaffold_2:164700..167196-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_676 ID=mRNA_676|Name=jgi.p|Nanoce1779_2|573757|organism=Nannochloropsis oceanica|type=mRNA|length=2497bp|location=Sequence derived from alignment at scaffold_2:164700..167196- (Nannochloropsis oceanica)
GTCTACAACATCGACGTAAAAGGTTGGTTGGGTGGGTGCCCGGGAGGAAG
AGGAAGGGGAGGAGCAGGAAGGAGAAGTGGGGAAGGCGTCATGTCCAAGC
CAGCGTGTACAGGACGGTGGTAGCAGTGGAAGGCAAGTAATGTGTGACGT
TGTTATATAGCAATATTGAAGTATAAGAAATAGCTGGAGACTGGTAAAAC
AAATAAGTGAGCCACATATGCCAATTTTCTGTTGAAAAGACACCCGGACA
TTGCAGGCATAACTCCTTTTTCCTTTGCCACCCCCCTCAGAACATCGTAT
GCACCTTGCACTCATCACTCAAGCGCTCCTCCTCCTACATATTGATGCCT
ATAGGACAACGGTTGCGTGGAATGTGCAAGAGGACGCTCTGATTCTTGTC
GCATTGCCGGGGTGTAACACCACATGTTCCTTCGCCTCGGGCGATCATCA
ACACTTTCATGTCCTCCTCCGTGGCGAGCCGCACCGCCAACACAAGCGGT
ACTAAGGCACCAAACCAACCACGCGACAAAGCTGCACCTCGTTCGGATGC
TGCCAGACTGAGTACGAGCGAGAGGACAAGGCAACAAGCCTACACCCAGG
GCAGCATCCTCCTCGGCGTCTCTCTCCTACTGGCCGCTCTTTGGTACCTA
AACCCAGAACAGATGCCCATCTGCCGCAATCAAATACGGCACATTTTACT
GCAGACGTGGGAATGGAAGGGCGATGACGAAGCCTTGAGTGAGGCGGTGG
CCCTTTTCCTAAAGTTCAGCAAAGAGTCGTTGCGAGGACTATCGATTCTT
GTCTTTACCATCAGCCTATGTTTCTTCGGTGGAGCTACCTTCCGAGACAT
TGATAACTCATCATCCTCCAGTTTGGTAGACGGCTTGACAAAGGCTCAGC
GTCGACTGCTTGGGCTGGACCCGCTGCCAGATAAGAGCAAAAACTTTTCA
TCCCTTGATCTTATGAGACAGGCAACGCCAGTCGGACGAGCCCTCCCCTT
ATCATCCTCCCCTTTTGCAAGCTCGTCCTCTGCTTCAAAATCCTCTGCAG
ACAAAATTCTCACACCTGGCATGGGTGGTGATGTATCGTCTGCAGCGTAC
CTCTCACCCCCACCGTCGTCCTATGGTCGCTTCACGCCCACCGGTTCCTC
TGGAGGGGGAGGACGGCCACCGCTGGGAAGGAGAAGCGGTGGTACTTCAG
GAGGAAGAAACGGGGGAGGAGGGGCAACGTTGAGTTTTGGGGAGAGTGCA
GGGGAGAAGGTGAGGAATTTGTTGGACGAGATGTTGCTCTCCCCGGGGTT
GGACTCGGTCCCACCGCAGCAGCAGACTCCTCAAGGAGGCGGCTTCAATG
GAATGGGGATGGACGGAGGGCAGCAGCAGTTTATCAGTAGTGTGCCCATT
TCACCAATCACCAAAGAGGTGGTAGGACCGTACCGAGAATCGCCGTTGGG
AGGAAACGGGGGAGGGCTTCTGGGGGGATCGACGGGATCGCCTGCCGAGC
AGTATGATGCGGCTGACTGGCCTCGAATGCTGCAGAGTCGGGTCGGTGAT
GGTCTGGACACGTTTAAATTAGCGCATTACGTGGATAACTTACGCGAGGC
TTTGTATGTGGAAATCGTTGAACTGCTGACCCGGTTTGAGGCGGCGGTGC
GGGCGCTGGAGCGGTGTGGTGTGCCCTTGGAGTTGTTGCTTGAACAGGTG
AAAACATCGCCTTCGGGTTACTCTCTGGAGGATTTCTTGGGTCAGGCAAG
GACGGGAGGATGGGGGAAAGAGGTGTATGAATACGTAGGATTGAAGCGGG
TGTTGGCGGAGGGTGAGAACTGGACGGATTTGTTCGGGCATGTCTGGAGG
AGGCTGGAGGAGCTGGTGGAGGACTCGTACTTGAGTGGATATGATTGGTC
AAGGGGAGGTATCTTGAGGGATCGAAACGTCACAGTAGAGCTTCCGACGG
ACGCGGACTTGATCATGCATTTGTTTTTGTGGCGCTGTGATGCAGGGGGA
GAGCACCGGCTGCACGAAGGGGACAGACCCTTTGTCAAGCAGCACTTTCT
GCAGGTGGCCCCCGGCACAGAGGAAACTTCCCGCACCCTGCGTGGGCGGA
ATTTGATCATGCGGTACGGGACTAGCCTTCCGTATTTCTCCGTGGTGGAG
AATGGAACCATCTATCGGATTCCGAAAGGGAAGGATAATGCCCTTGTGGC
CGTTGTGCTGTTTCTGTTCTTGGCAAGGCGGGATAGGTGGCTTCCAACGT
ACAATCAGGGCTACCGACGCTTGCTCGAGAACGTCTTCGGGTCGGTGGTA
CACCCTGGGAGTGATGGTGTAGGTAAGTCTAAAGGAAAAGGGGGGAAAAG
AGTAGGAGGGGTAAGAGGAGGAGGAAGACCGCTGGCCTTGACTGGCGGAG
GGAGACTGTGAAGCGAGAGGGAGTGAGCACCAAAGCAGAGGAATGCAACA
CAAGTTTAGGTGAAAATCAAAGTCAAGGAGATCAATATCTACGCTGA
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Coding sequence (CDS) from alignment at scaffold_2:164700..167196-

>mRNA_676 ID=mRNA_676|Name=jgi.p|Nanoce1779_2|573757|organism=Nannochloropsis oceanica|type=CDS|length=1953bp|location=Sequence derived from alignment at scaffold_2:164700..167196- (Nannochloropsis oceanica)
ATGTCCTCCTCCGTGGCGAGCCGCACCGCCAACACAAGCGGTACTAAGGC
ACCAAACCAACCACGCGACAAAGCTGCACCTCGTTCGGATGCTGCCAGAC
TGAGTACGAGCGAGAGGACAAGGCAACAAGCCTACACCCAGGGCAGCATC
CTCCTCGGCGTCTCTCTCCTACTGGCCGCTCTTTGGTACCTAAACCCAGA
ACAGATGCCCATCTGCCGCAATCAAATACGGCACATTTTACTGCAGACGT
GGGAATGGAAGGGCGATGACGAAGCCTTGAGTGAGGCGGTGGCCCTTTTC
CTAAAGTTCAGCAAAGAGTCGTTGCGAGGACTATCGATTCTTGTCTTTAC
CATCAGCCTATGTTTCTTCGGTGGAGCTACCTTCCGAGACATTGATAACT
CATCATCCTCCAGTTTGGTAGACGGCTTGACAAAGGCTCAGCGTCGACTG
CTTGGGCTGGACCCGCTGCCAGATAAGAGCAAAAACTTTTCATCCCTTGA
TCTTATGAGACAGGCAACGCCAGTCGGACGAGCCCTCCCCTTATCATCCT
CCCCTTTTGCAAGCTCGTCCTCTGCTTCAAAATCCTCTGCAGACAAAATT
CTCACACCTGGCATGGGTGGTGATGTATCGTCTGCAGCGTACCTCTCACC
CCCACCGTCGTCCTATGGTCGCTTCACGCCCACCGGTTCCTCTGGAGGGG
GAGGACGGCCACCGCTGGGAAGGAGAAGCGGTGGTACTTCAGGAGGAAGA
AACGGGGGAGGAGGGGCAACGTTGAGTTTTGGGGAGAGTGCAGGGGAGAA
GGTGAGGAATTTGTTGGACGAGATGTTGCTCTCCCCGGGGTTGGACTCGG
TCCCACCGCAGCAGCAGACTCCTCAAGGAGGCGGCTTCAATGGAATGGGG
ATGGACGGAGGGCAGCAGCAGTTTATCAGTAGTGTGCCCATTTCACCAAT
CACCAAAGAGGTGGTAGGACCGTACCGAGAATCGCCGTTGGGAGGAAACG
GGGGAGGGCTTCTGGGGGGATCGACGGGATCGCCTGCCGAGCAGTATGAT
GCGGCTGACTGGCCTCGAATGCTGCAGAGTCGGGTCGGTGATGGTCTGGA
CACGTTTAAATTAGCGCATTACGTGGATAACTTACGCGAGGCTTTGTATG
TGGAAATCGTTGAACTGCTGACCCGGTTTGAGGCGGCGGTGCGGGCGCTG
GAGCGGTGTGGTGTGCCCTTGGAGTTGTTGCTTGAACAGGTGAAAACATC
GCCTTCGGGTTACTCTCTGGAGGATTTCTTGGGTCAGGCAAGGACGGGAG
GATGGGGGAAAGAGGTGTATGAATACGTAGGATTGAAGCGGGTGTTGGCG
GAGGGTGAGAACTGGACGGATTTGTTCGGGCATGTCTGGAGGAGGCTGGA
GGAGCTGGTGGAGGACTCGTACTTGAGTGGATATGATTGGTCAAGGGGAG
GTATCTTGAGGGATCGAAACGTCACAGTAGAGCTTCCGACGGACGCGGAC
TTGATCATGCATTTGTTTTTGTGGCGCTGTGATGCAGGGGGAGAGCACCG
GCTGCACGAAGGGGACAGACCCTTTGTCAAGCAGCACTTTCTGCAGGTGG
CCCCCGGCACAGAGGAAACTTCCCGCACCCTGCGTGGGCGGAATTTGATC
ATGCGGTACGGGACTAGCCTTCCGTATTTCTCCGTGGTGGAGAATGGAAC
CATCTATCGGATTCCGAAAGGGAAGGATAATGCCCTTGTGGCCGTTGTGC
TGTTTCTGTTCTTGGCAAGGCGGGATAGGTGGCTTCCAACGTACAATCAG
GGCTACCGACGCTTGCTCGAGAACGTCTTCGGGTCGGTGGTACACCCTGG
GAGTGATGGTGTAGGTAAGTCTAAAGGAAAAGGGGGGAAAAGAGTAGGAG
GGGTAAGAGGAGGAGGAAGACCGCTGGCCTTGACTGGCGGAGGGAGACTG
TGA
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Synonyms
Publications