jgi.p|Nanoce1779_2|596233, mRNA_6758 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596233
Unique Name	mRNA_6758
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2384
Alignment location	scaffold_17:20043..22426 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596319
Track	FilteredModels2
ProteinId	596233

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:20043..22426 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596233	gene_6758	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596233	mRNA_6758-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6758	CDS_6758	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:20043..22426-
coding sequence from alignment at scaffold_17:20043..22426-

mRNA sequence

>mRNA_6758 ID=mRNA_6758|Name=jgi.p|Nanoce1779_2|596233|organism=Nannochloropsis oceanica|type=mRNA|length=2384bp
GTGCATATGTCTCCGGTTTTGGTGGTGCCGGCTTTCCCGGCTTTCCCCGC
ATGCCGAGCCTTCCACACGATAAACACGGCAGCGGGATGTGCCACAACAA
CAAAACTAAGTTGGATACCGTGCTCGTCTTCCGTACTTTTTGTTGCGAAA
AGAACCTTCATACACATTCACAAAATCTCTCGTAGACTTGCTTGCTCTCG
CTATGCTGCTTCCCTTCCGGTCCCCACCTTTTTGCGAGTCTTCCTCGCTT
CTTGCGCGTATTTATCTATCACAAACACACGCATGCTTTATTTTTGTCAC
TACATAGCACGCGATGAAGGCCGTCTGGAGGACGAGGACTGCTTGGGGAG
CCCCGAAAGCCCAGACCACTCACACTGTCGTTCTATCACACATAAAACAC
CCAGGGACGTCCCTTGCACGGTTTCAACCCGCCTAGCTCGCTAGGCTACT
TCCCTCGTGTCTCCAGCGCATCTGCACCAATCACTTCACTTCACAGCATT
ACTTCACCAAGAGGGGGAAATGGAGCGGATAGCGGCCCTGTCCCTGACGA
TCCCGCCCCCGGAGATCTGCACAAAAACGCCCGACGGCAGCCCTCGTGCC
TTGGGTATCCCCAAAAAAATTCCGGAGCGCCGTATCGTCTCATCTTTGCC
CGGCTCCTCAAGTCCTGTACCTAGCAGTCCAGCGTCATGGAAAGGCTCCA
GTCAAAGCAGCGTTGCCTTGGGACCCACCGCGGCCGGGACACCCACTAGT
CGTACCATGCTTCACCGTTTCCACACCTCGTCCCCGCGAGCCTTGGGCCT
TCGTTCACCCTTGTCAGGTATGCGTTCAGGTCTGGGTGCAGGTTGGACGC
GGGCCATTGTTGATTTGTACCAGACCGAAGACCCGGACGAAATGATGCGG
ATCTTAATGGAAATCCAAGCGCTGCTGCGCGTGCAAAAAATGGGCAATGG
ACGACACGCTGGGGGAAACAAGGAGCAGCAGCATGCCAAGTTTTGTAAAA
AGGACCTGGAGGCAGCATTAAATGAGAAGAAGAAGAAGATGCCCTTGCTG
TTTACGCCCGGCATCCGCCGCTTTAGCCTCGAGTTGCTCGCTGAGTTTTT
TGACAAGGACCACCTAAACAAGCTGCCTTCGGCCCTGCTTGTCTACACCA
CCTCTTTCCTCAGCACGTCTCAGCTGGGCGTCGCCGCCAGCGTCTGCCAG
CAGTGGAAAGAAGTCGTAGGGAGCGATGCGGTCTGGAAGCCTTTGTATGT
CAAACGTTTTAACTTTTTGAGTGCACCTGGCACCAAGGCTGCTGTTACTG
CTGCTACTGCTGCTCCTGCTACTGGTGGTGGTAGCAGTCGGCTTTTGCCT
TTTCAGCAGCAGTTTCGCAAGCGGCTCCTCGATCCGTCTGTAGGAGATTC
GGTAGAGGTGGCTTGGAAGGGAAAGTTTCGGTTGGAGTCATTGGATATTT
ATCAGGGCTTGGCGTGGTGGTCGGCGGTGGTGGTGGAGAAGGGGGAAAAT
GGCGCACGGTACAAGATTCATTACCCCGGTTGGGACAGTCGGTGGGATGA
ATGGGTGCCTCGTGATAGACTGCGATGGACGATCGAGCAGGACTTGAACA
AGAAGATTGGGCCCAATGACGACGTAGAGATTTGGTGCTGTGGAAGCAAT
GTGCCTGGTGCGTGGCTCGAGGCCAAGGTTCGGAGGGTCAAGGGCCAGAA
ATACTGTGTAGGGCGTGTCTTATCCTCTGGCGCCTTGTGGGTAGAACGAG
AGCGTGTGCGGATGTCGCCTAAGGGTGCTGCTCGTTCTCTGGGAAAACAA
GGCGCGGCAAGTTTTTTTTCGAGGGATGCGGCGGCGGCTGCGGCGGCGGT
GGGTGCGAGCTGCTCTATCATGTAAGGGAGGAAACGGAGGAAGAAAGGAA
GGGAGGGCTTGCTTATATTTTGGATAATAACGACAGATAAGACGGCAATG
AGAAAGAGGGTGGCAGTCCTTCTCAGTGGATGAGAAATTTGTGTCTTCTC
CTCTCTTCATTTTTCCAGAAAGCTTCAAAAGGGAAAATCAAAGGGTCTAG
ACGGCCTCAGGTAGCTCTGGCAGCGGTGATGACGACTGAAGTCTTGTGAT
GAAGCGGCCAACGCCGTCGAGTTAAACGACAAAGAAAGTAAGTAGAAGAA
AAAGAGTTCAAAGAAAGTGAGTGAGCGAGTGAGTGCGTGAGTGACTGAAC
AAAGGAAATGAGAAAAATGAAGAGAGGTGCATATGTCTGTGTATGTGTAA
ATTGACCAAGAGAAAATGTTGTAAGAAACAATTTTTTGCCTTGTGGACGG
CCGTTTGAAAGGAAAAAGGAAGGAGGAGAGAACAAATAAGAAATAGTGGG
CGATGGGGCGAAAATTGAGGTGGGAATAAGTCGG

protein sequence of jgi.p|Nanoce1779_2|596233

>mRNA_6758-protein ID=mRNA_6758-protein|Name=jgi.p|Nanoce1779_2|596233|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MERIAALSLTIPPPEICTKTPDGSPRALGIPKKIPERRIVSSLPGSSSPV
PSSPASWKGSSQSSVALGPTAAGTPTSRTMLHRFHTSSPRALGLRSPLSG
MRSGLGAGWTRAIVDLYQTEDPDEMMRILMEIQALLRVQKMGNGRHAGGN
KEQQHAKFCKKDLEAALNEKKKKMPLLFTPGIRRFSLELLAEFFDKDHLN
KLPSALLVYTTSFLSTSQLGVAASVCQQWKEVVGSDAVWKPLYVKRFNFL
SAPGTKAAVTAATAAPATGGGSSRLLPFQQQFRKRLLDPSVGDSVEVAWK
GKFRLESLDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDR
LRWTIEQDLNKKIGPNDDVEIWCCGSNVPGAWLEAKVRRVKGQKYCVGRV
LSSGALWVERERVRMSPKGAARSLGKQGAASFFSRDAAAAAAAVGASCSI
M*

mRNA from alignment at scaffold_17:20043..22426-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6758 ID=mRNA_6758|Name=jgi.p|Nanoce1779_2|596233|organism=Nannochloropsis oceanica|type=mRNA|length=2384bp|location=Sequence derived from alignment at scaffold_17:20043..22426- (Nannochloropsis oceanica)
GTGCATATGTCTCCGGTTTTGGTGGTGCCGGCTTTCCCGGCTTTCCCCGC
ATGCCGAGCCTTCCACACGATAAACACGGCAGCGGGATGTGCCACAACAA
CAAAACTAAGTTGGATACCGTGCTCGTCTTCCGTACTTTTTGTTGCGAAA
AGAACCTTCATACACATTCACAAAATCTCTCGTAGACTTGCTTGCTCTCG
CTATGCTGCTTCCCTTCCGGTCCCCACCTTTTTGCGAGTCTTCCTCGCTT
CTTGCGCGTATTTATCTATCACAAACACACGCATGCTTTATTTTTGTCAC
TACATAGCACGCGATGAAGGCCGTCTGGAGGACGAGGACTGCTTGGGGAG
CCCCGAAAGCCCAGACCACTCACACTGTCGTTCTATCACACATAAAACAC
CCAGGGACGTCCCTTGCACGGTTTCAACCCGCCTAGCTCGCTAGGCTACT
TCCCTCGTGTCTCCAGCGCATCTGCACCAATCACTTCACTTCACAGCATT
ACTTCACCAAGAGGGGGAAATGGAGCGGATAGCGGCCCTGTCCCTGACGA
TCCCGCCCCCGGAGATCTGCACAAAAACGCCCGACGGCAGCCCTCGTGCC
TTGGGTATCCCCAAAAAAATTCCGGAGCGCCGTATCGTCTCATCTTTGCC
CGGCTCCTCAAGTCCTGTACCTAGCAGTCCAGCGTCATGGAAAGGCTCCA
GTCAAAGCAGCGTTGCCTTGGGACCCACCGCGGCCGGGACACCCACTAGT
CGTACCATGCTTCACCGTTTCCACACCTCGTCCCCGCGAGCCTTGGGCCT
TCGTTCACCCTTGTCAGGTATGCGTTCAGGTCTGGGTGCAGGTTGGACGC
GGGCCATTGTTGATTTGTACCAGACCGAAGACCCGGACGAAATGATGCGG
ATCTTAATGGAAATCCAAGCGCTGCTGCGCGTGCAAAAAATGGGCAATGG
ACGACACGCTGGGGGAAACAAGGAGCAGCAGCATGCCAAGTTTTGTAAAA
AGGACCTGGAGGCAGCATTAAATGAGAAGAAGAAGAAGATGCCCTTGCTG
TTTACGCCCGGCATCCGCCGCTTTAGCCTCGAGTTGCTCGCTGAGTTTTT
TGACAAGGACCACCTAAACAAGCTGCCTTCGGCCCTGCTTGTCTACACCA
CCTCTTTCCTCAGCACGTCTCAGCTGGGCGTCGCCGCCAGCGTCTGCCAG
CAGTGGAAAGAAGTCGTAGGGAGCGATGCGGTCTGGAAGCCTTTGTATGT
CAAACGTTTTAACTTTTTGAGTGCACCTGGCACCAAGGCTGCTGTTACTG
CTGCTACTGCTGCTCCTGCTACTGGTGGTGGTAGCAGTCGGCTTTTGCCT
TTTCAGCAGCAGTTTCGCAAGCGGCTCCTCGATCCGTCTGTAGGAGATTC
GGTAGAGGTGGCTTGGAAGGGAAAGTTTCGGTTGGAGTCATTGGATATTT
ATCAGGGCTTGGCGTGGTGGTCGGCGGTGGTGGTGGAGAAGGGGGAAAAT
GGCGCACGGTACAAGATTCATTACCCCGGTTGGGACAGTCGGTGGGATGA
ATGGGTGCCTCGTGATAGACTGCGATGGACGATCGAGCAGGACTTGAACA
AGAAGATTGGGCCCAATGACGACGTAGAGATTTGGTGCTGTGGAAGCAAT
GTGCCTGGTGCGTGGCTCGAGGCCAAGGTTCGGAGGGTCAAGGGCCAGAA
ATACTGTGTAGGGCGTGTCTTATCCTCTGGCGCCTTGTGGGTAGAACGAG
AGCGTGTGCGGATGTCGCCTAAGGGTGCTGCTCGTTCTCTGGGAAAACAA
GGCGCGGCAAGTTTTTTTTCGAGGGATGCGGCGGCGGCTGCGGCGGCGGT
GGGTGCGAGCTGCTCTATCATGTAAGGGAGGAAACGGAGGAAGAAAGGAA
GGGAGGGCTTGCTTATATTTTGGATAATAACGACAGATAAGACGGCAATG
AGAAAGAGGGTGGCAGTCCTTCTCAGTGGATGAGAAATTTGTGTCTTCTC
CTCTCTTCATTTTTCCAGAAAGCTTCAAAAGGGAAAATCAAAGGGTCTAG
ACGGCCTCAGGTAGCTCTGGCAGCGGTGATGACGACTGAAGTCTTGTGAT
GAAGCGGCCAACGCCGTCGAGTTAAACGACAAAGAAAGTAAGTAGAAGAA
AAAGAGTTCAAAGAAAGTGAGTGAGCGAGTGAGTGCGTGAGTGACTGAAC
AAAGGAAATGAGAAAAATGAAGAGAGGTGCATATGTCTGTGTATGTGTAA
ATTGACCAAGAGAAAATGTTGTAAGAAACAATTTTTTGCCTTGTGGACGG
CCGTTTGAAAGGAAAAAGGAAGGAGGAGAGAACAAATAAGAAATAGTGGG
CGATGGGGCGAAAATTGAGGTGGGAATAAGTCGG

Coding sequence (CDS) from alignment at scaffold_17:20043..22426-

>mRNA_6758 ID=mRNA_6758|Name=jgi.p|Nanoce1779_2|596233|organism=Nannochloropsis oceanica|type=CDS|length=1356bp|location=Sequence derived from alignment at scaffold_17:20043..22426- (Nannochloropsis oceanica)
ATGGAGCGGATAGCGGCCCTGTCCCTGACGATCCCGCCCCCGGAGATCTG
CACAAAAACGCCCGACGGCAGCCCTCGTGCCTTGGGTATCCCCAAAAAAA
TTCCGGAGCGCCGTATCGTCTCATCTTTGCCCGGCTCCTCAAGTCCTGTA
CCTAGCAGTCCAGCGTCATGGAAAGGCTCCAGTCAAAGCAGCGTTGCCTT
GGGACCCACCGCGGCCGGGACACCCACTAGTCGTACCATGCTTCACCGTT
TCCACACCTCGTCCCCGCGAGCCTTGGGCCTTCGTTCACCCTTGTCAGGT
ATGCGTTCAGGTCTGGGTGCAGGTTGGACGCGGGCCATTGTTGATTTGTA
CCAGACCGAAGACCCGGACGAAATGATGCGGATCTTAATGGAAATCCAAG
CGCTGCTGCGCGTGCAAAAAATGGGCAATGGACGACACGCTGGGGGAAAC
AAGGAGCAGCAGCATGCCAAGTTTTGTAAAAAGGACCTGGAGGCAGCATT
AAATGAGAAGAAGAAGAAGATGCCCTTGCTGTTTACGCCCGGCATCCGCC
GCTTTAGCCTCGAGTTGCTCGCTGAGTTTTTTGACAAGGACCACCTAAAC
AAGCTGCCTTCGGCCCTGCTTGTCTACACCACCTCTTTCCTCAGCACGTC
TCAGCTGGGCGTCGCCGCCAGCGTCTGCCAGCAGTGGAAAGAAGTCGTAG
GGAGCGATGCGGTCTGGAAGCCTTTGTATGTCAAACGTTTTAACTTTTTG
AGTGCACCTGGCACCAAGGCTGCTGTTACTGCTGCTACTGCTGCTCCTGC
TACTGGTGGTGGTAGCAGTCGGCTTTTGCCTTTTCAGCAGCAGTTTCGCA
AGCGGCTCCTCGATCCGTCTGTAGGAGATTCGGTAGAGGTGGCTTGGAAG
GGAAAGTTTCGGTTGGAGTCATTGGATATTTATCAGGGCTTGGCGTGGTG
GTCGGCGGTGGTGGTGGAGAAGGGGGAAAATGGCGCACGGTACAAGATTC
ATTACCCCGGTTGGGACAGTCGGTGGGATGAATGGGTGCCTCGTGATAGA
CTGCGATGGACGATCGAGCAGGACTTGAACAAGAAGATTGGGCCCAATGA
CGACGTAGAGATTTGGTGCTGTGGAAGCAATGTGCCTGGTGCGTGGCTCG
AGGCCAAGGTTCGGAGGGTCAAGGGCCAGAAATACTGTGTAGGGCGTGTC
TTATCCTCTGGCGCCTTGTGGGTAGAACGAGAGCGTGTGCGGATGTCGCC
TAAGGGTGCTGCTCGTTCTCTGGGAAAACAAGGCGCGGCAAGTTTTTTTT
CGAGGGATGCGGCGGCGGCTGCGGCGGCGGTGGGTGCGAGCTGCTCTATC
ATGTAA

Synonyms

Publications