jgi.p|Nanoce1779_2|111950, mRNA_6757 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|111950
Unique NamemRNA_6757
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length804
Alignment locationscaffold_17:19673..20476 +

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Properties
Property NameValue
TranscriptId112036
TrackFilteredModels2
ProteinId111950
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:19673..20476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|111950gene_6757Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|111950mRNA_6757-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6757CDS_6757Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6757 ID=mRNA_6757|Name=jgi.p|Nanoce1779_2|111950|organism=Nannochloropsis oceanica|type=mRNA|length=804bp
CTGAAGAACAAGCTGATAGTAAGATTAGGGGCCAGCGATCTAGACATTTC
TTTTGGAGGTGGGATTGAAGGATACGACATATATGTAGAAGAAATGTGTG
CAAGAGGGAAACACAGAAAGGACATCATTAAGTTGGATCCTTTTTTACCC
CTGCCAAAACGACAACCACGAGACAAATAGTCGATTGGAAGGAACAAGGG
AGAGAAAGGATAGGAAGAAAGGCAACCAGAAGGAGGAGAATATCCTGATT
AGAAACATGCCCAGCAGTCAGCATCGGTAAGATTGAAACAAAGCGATGGT
AAAGCAGAGAGCAATCACAGAAATCATCAAAGGTGAAAATGAAAACACTT
ATCGAATGAGCAGCGACCGACCGACTTATTCCCACCTCAATTTTCGCCCC
ATCGCCCACTATTTCTTATTTGTTCTCTCCTCCTTCCTTTTTCCTTTCAA
ACGGCCGTCCACAAGGCAAAAAATTGTTTCTTACAACATTTTCTCTTGGT
CAATTTACACATACACAGACATATGCACCTCTCTTCATTTTTCTCATTTC
CTTTGTTCAGTCACTCACGCACTCACTCGCTCACTCACTTTCTTTGAACT
CTTTTTCTTCTACTTACTTTCTTTGTCGTTTAACTCGACGGCGTTGGCCG
CTTCATCACAAGACTTCAGTCGTCATCACCGCTGCCAGAGCTACCTGAGG
CCGTCTAGACCCTTTGATTTTCCCTTTTGAAGCTTTCTGGAAAAATGAAG
AGAGGAGAAGACACAAATTTCTCATCCACTGAGAAGGACTGCCACCCTCT
TTCT
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protein sequence of jgi.p|Nanoce1779_2|111950

>mRNA_6757-protein ID=mRNA_6757-protein|Name=jgi.p|Nanoce1779_2|111950|organism=Nannochloropsis oceanica|type=polypeptide|length=145bp
MVKQRAITEIIKGENENTYRMSSDRPTYSHLNFRPIAHYFLFVLSSFLFP
FKRPSTRQKIVSYNIFSWSIYTYTDICTSLHFSHFLCSVTHALTRSLTFF
ELFFFYLLSLSFNSTALAASSQDFSRHHRCQSYLRPSRPFDFPF*
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mRNA from alignment at scaffold_17:19673..20476+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6757 ID=mRNA_6757|Name=jgi.p|Nanoce1779_2|111950|organism=Nannochloropsis oceanica|type=mRNA|length=804bp|location=Sequence derived from alignment at scaffold_17:19673..20476+ (Nannochloropsis oceanica)
CTGAAGAACAAGCTGATAGTAAGATTAGGGGCCAGCGATCTAGACATTTC
TTTTGGAGGTGGGATTGAAGGATACGACATATATGTAGAAGAAATGTGTG
CAAGAGGGAAACACAGAAAGGACATCATTAAGTTGGATCCTTTTTTACCC
CTGCCAAAACGACAACCACGAGACAAATAGTCGATTGGAAGGAACAAGGG
AGAGAAAGGATAGGAAGAAAGGCAACCAGAAGGAGGAGAATATCCTGATT
AGAAACATGCCCAGCAGTCAGCATCGGTAAGATTGAAACAAAGCGATGGT
AAAGCAGAGAGCAATCACAGAAATCATCAAAGGTGAAAATGAAAACACTT
ATCGAATGAGCAGCGACCGACCGACTTATTCCCACCTCAATTTTCGCCCC
ATCGCCCACTATTTCTTATTTGTTCTCTCCTCCTTCCTTTTTCCTTTCAA
ACGGCCGTCCACAAGGCAAAAAATTGTTTCTTACAACATTTTCTCTTGGT
CAATTTACACATACACAGACATATGCACCTCTCTTCATTTTTCTCATTTC
CTTTGTTCAGTCACTCACGCACTCACTCGCTCACTCACTTTCTTTGAACT
CTTTTTCTTCTACTTACTTTCTTTGTCGTTTAACTCGACGGCGTTGGCCG
CTTCATCACAAGACTTCAGTCGTCATCACCGCTGCCAGAGCTACCTGAGG
CCGTCTAGACCCTTTGATTTTCCCTTTTGAAGCTTTCTGGAAAAATGAAG
AGAGGAGAAGACACAAATTTCTCATCCACTGAGAAGGACTGCCACCCTCT
TTCT
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Coding sequence (CDS) from alignment at scaffold_17:19673..20476+

>mRNA_6757 ID=mRNA_6757|Name=jgi.p|Nanoce1779_2|111950|organism=Nannochloropsis oceanica|type=CDS|length=435bp|location=Sequence derived from alignment at scaffold_17:19673..20476+ (Nannochloropsis oceanica)
ATGGTAAAGCAGAGAGCAATCACAGAAATCATCAAAGGTGAAAATGAAAA
CACTTATCGAATGAGCAGCGACCGACCGACTTATTCCCACCTCAATTTTC
GCCCCATCGCCCACTATTTCTTATTTGTTCTCTCCTCCTTCCTTTTTCCT
TTCAAACGGCCGTCCACAAGGCAAAAAATTGTTTCTTACAACATTTTCTC
TTGGTCAATTTACACATACACAGACATATGCACCTCTCTTCATTTTTCTC
ATTTCCTTTGTTCAGTCACTCACGCACTCACTCGCTCACTCACTTTCTTT
GAACTCTTTTTCTTCTACTTACTTTCTTTGTCGTTTAACTCGACGGCGTT
GGCCGCTTCATCACAAGACTTCAGTCGTCATCACCGCTGCCAGAGCTACC
TGAGGCCGTCTAGACCCTTTGATTTTCCCTTTTGA
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Synonyms
Publications