jgi.p|Nanoce1779_2|596231, mRNA_6756 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596231
Unique NamemRNA_6756
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1363
Alignment locationscaffold_17:18511..20042 +

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Properties
Property NameValue
TranscriptId596317
TrackFilteredModels2
ProteinId596231
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:18511..20042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596231gene_6756Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596231mRNA_6756-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6756CDS_6756Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6756 ID=mRNA_6756|Name=jgi.p|Nanoce1779_2|596231|organism=Nannochloropsis oceanica|type=mRNA|length=1363bp
ACAGCGCCTCTGCCTTGCTCGTCAGGCAAGTATTCCCCTTGCTTGACTGC
TCCCAATAGTCTCGGTTCCGGCCTCGAGGCGGGATCACATCTCGTCAGCA
GCAACCAGAAGTGAGTTGCAGGGTGGCACGCAGGACCAAGACAAATTCAG
CCAGCTAAGGGCAACCACAGGTCTAGAATTACAAGTTTAGTTGAGCAACT
CCTGTACCGAATTTTAAGTAATGGCACCTACATTTTTATTGCTTTGCTTG
CTATTGGCAGGAGTTGTAGAGGGGCGGCGGCATCAAGGTTTGCGGGGTTC
TGCTCCCCTCAACGAGTCACCCGAGGATGGTCTGCCTCCCGACCATGAAC
TCCCAGACACTGTCAATGTGGACTACCCCTTTCCTTACATGAAAGGCCAT
CCGGTGGATAACTGCTTGACCATGATGGGCACCGACAGCTGCGGCAAGGC
CGCCGCAGACTCCTTTTGCCACTTTCAAAAATGTGAACAGGCCGTGTCAT
TTGTAGAGAGTCAGGGCAATCGGGGACCCACCTGGGTTGCGGGTGATGGT
GCAGTCCGGGAGACTGGAGGGGGGTCTTTTGACAAGATAACTTGTCAGTG
CTCCGTTCCTGAGTCATCTACACCGGGCGCGTCCGACGCGAACCAAATTG
ATTACAACAACCCAGAAATCCTTGGCCATCGCCTGGATTTTTGTTTAACG
AAGGAAAGACTTAATTGTGGGAAGCCAACCGCTGATGCCTTTTGTGAGTC
TTTCGGCAACAGTGGCTCCACGCGGTTCGTAGAGGATCCCGCGCCCCCCC
GGAATGCGACTTGGTTTATTGGCGATCATACCCTGAATGAGGCTGGAGAT
CGGCATTCGTTCCAGAGTATCACATGTGTATAGCCGCGTCGAGACCAGCC
GCCTACCCTCCCGGAACGACGTTGATGTCGCCTTTTGTATTAGCAGCAAA
ACCAGTATAAAAATCAATATGTGACAGTAGAACAATACCTTGCCTGAAGA
ACAAGCTGATAGTAAGATTAGGGGCCAGCGATCTAGACATTTCTTTTGGA
GGTGGGATTGAAGGATACGACATATATGTAGAAGAAATGTGTGCAAGAGG
GAAACACAGAAAGGACATCATTAAGTTGGATCCTTTTTTACCCCTGCCAA
AACGACAACCACGAGACAAATAGTCGATTGGAAGGAACAAGGGAGAGAAA
GGATAGGAAGAAAGGCAACCAGAAGGAGGAGAATATCCTGATTAGAAACA
TGCCCAGCAGTCAGCATCGGTAAGATTGAAACAAAGCGATGGTAAAGCAG
AGAGCAATCACAGAAATCATCAAAGGTGAAAATGAAAACACTTATCGAAT
GAGCAGCGACCGA
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protein sequence of jgi.p|Nanoce1779_2|596231

>mRNA_6756-protein ID=mRNA_6756-protein|Name=jgi.p|Nanoce1779_2|596231|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MAPTFLLLCLLLAGVVEGRRHQGLRGSAPLNESPEDGLPPDHELPDTVNV
DYPFPYMKGHPVDNCLTMMGTDSCGKAAADSFCHFQKCEQAVSFVESQGN
RGPTWVAGDGAVRETGGGSFDKITCQCSVPESSTPGASDANQIDYNNPEI
LGHRLDFCLTKERLNCGKPTADAFCESFGNSGSTRFVEDPAPPRNATWFI
GDHTLNEAGDRHSFQSITCV*
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mRNA from alignment at scaffold_17:18511..20042+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6756 ID=mRNA_6756|Name=jgi.p|Nanoce1779_2|596231|organism=Nannochloropsis oceanica|type=mRNA|length=1532bp|location=Sequence derived from alignment at scaffold_17:18511..20042+ (Nannochloropsis oceanica)
ACAGCGCCTCTGCCTTGCTCGTCAGGCAAGTATTCCCCTTGCTTGACTGC
TCCCAATAGTCTCGGTTCCGGCCTCGAGGCGGGATCACATCTCGTCAGCA
GCAACCAGAAGTGAGTTGCAGGGTGGCACGCAGGACCAAGACAAATTCAG
CCAGCTAAGGGCAACCACAGGTCTAGAATTACAAGTTTAGTTGAGCAACT
CCTGTACCGAATTTTAAGTAATGGCACCTACATTTTTATTGCTTTGCTTG
CTATTGGCAGGAGTTGTAGAGGGGCGGCGGCATCAAGGTTTGCGGGGTTC
TGCTCCCCTCAACGAGTCACCCGAGGATGGTCTGCCTCCCGACCATGAAC
TCCCAGACACTGTCAATGTGGACTACCCCTTTCCTTACATGAAAGGCCAT
CCGGTGGATAACTGCTTGACCATGATGGGCACCGACAGCTGCGGCAAGGC
CGCCGCAGACTCCTTTTGCCACTTTCAAAAATGTGAACAGGCCGTGTCAT
TTGTAGAGAGTCAGGGCAATCGGGGACCCACCTGGGTTGCGGGTGATGGT
GCAGTCCGGGAGACTGGAGGGGGGTCTTTTGACAAGATAACTTGTCAGTG
CTCCGTTCCTGAGTCATCTACACCGGGCGCGTCCGACGCGAACCAAATTG
ATTACAACAACCCAGAAATCCTTGGCCATCGCCTGGATTTTTGTTTAACG
AAGGAAAGACTTAATTGTGGGAAGCCAACCGCTGATGCCTTTTGTGAGTC
TTTCGGCAACAGTGGCTCCACGCGGTTCGTAGAGGATCCCGCGCCCCCCC
GGAATGCGACTTGGTTTATTGGCGATCATACCCTGAATGAGGCTGGAGAT
CGGCATTCGTTCCAGTAAGTGCATAGAGATAATGGGAATGAGTGTGTGTG
TGGTATGATTGTTGTGTGACCTCACCATTTCTGTCTCGTTTTTATCCCCT
AGGTCAAGTAATTTTTTATCCAAATCCAGTTTCTCATTTCGACTCATTTT
CCTCACTCCTCCCTCCATCTTCACCCTCAACAGGAGTATCACATGTGTAT
AGCCGCGTCGAGACCAGCCGCCTACCCTCCCGGAACGACGTTGATGTCGC
CTTTTGTATTAGCAGCAAAACCAGTATAAAAATCAATATGTGACAGTAGA
ACAATACCTTGCCTGAAGAACAAGCTGATAGTAAGATTAGGGGCCAGCGA
TCTAGACATTTCTTTTGGAGGTGGGATTGAAGGATACGACATATATGTAG
AAGAAATGTGTGCAAGAGGGAAACACAGAAAGGACATCATTAAGTTGGAT
CCTTTTTTACCCCTGCCAAAACGACAACCACGAGACAAATAGTCGATTGG
AAGGAACAAGGGAGAGAAAGGATAGGAAGAAAGGCAACCAGAAGGAGGAG
AATATCCTGATTAGAAACATGCCCAGCAGTCAGCATCGGTAAGATTGAAA
CAAAGCGATGGTAAAGCAGAGAGCAATCACAGAAATCATCAAAGGTGAAA
ATGAAAACACTTATCGAATGAGCAGCGACCGA
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Coding sequence (CDS) from alignment at scaffold_17:18511..20042+

>mRNA_6756 ID=mRNA_6756|Name=jgi.p|Nanoce1779_2|596231|organism=Nannochloropsis oceanica|type=CDS|length=1326bp|location=Sequence derived from alignment at scaffold_17:18511..20042+ (Nannochloropsis oceanica)
ATGGCACCTACATTTTTATTGCTTTGCTTGCTATTGGCAGGAGTTGTAGA
GGGGCGGCGGCATCAAGGTTTGCGGGGTTCTGCTCCCCTCAACGAGTCAC
CCGAGGATGGTCTGCCTCCCGACCATGAACTCCCAGACACTGTCAATGTG
GACTACCCCTTTCCTTACATGAAAGGCCATCCGGTGGATAACTGCTTGAC
CATGATGGGCACCGACAGCTGCGGCAAGGCCGCCGCAGACTCCTTTTGCC
ACTTTCAAAAATGTGAACAGGCCGTGTCATTTGTAGAGAGTCAGGGCAAT
CGGGGACCCACCTGGGTTGCGGGTGATGGTGCAGTCCGGGAGACTGGAGG
GGGGTCTTTTGACAAGATAACTTGTCAGTGCTCCGTTCCTGAGTCATCTA
CACCGGGCGCGTCCGACGCGAACCAAATTGATTACAACAACCCAGAAATC
CTTGGCCATCGCCTGGATTTTTGTTTAACGAAGGAAAGACTTAATTGTGG
GAAGCCAACCGCTGATGCCTTTTGTGAGTCTTTCGGCAACAGTGGCTCCA
CGCGGTTCGTAGAGGATCCCGCGCCCCCCCGGAATGCGACTTGGTTTATT
GGCGATCATACCCTGAATGAGGCTGGAGATCGGCATTCGTTCCAGAGTAT
CACATGTGTATAGATGGCACCTACATTTTTATTGCTTTGCTTGCTATTGG
CAGGAGTTGTAGAGGGGCGGCGGCATCAAGGTTTGCGGGGTTCTGCTCCC
CTCAACGAGTCACCCGAGGATGGTCTGCCTCCCGACCATGAACTCCCAGA
CACTGTCAATGTGGACTACCCCTTTCCTTACATGAAAGGCCATCCGGTGG
ATAACTGCTTGACCATGATGGGCACCGACAGCTGCGGCAAGGCCGCCGCA
GACTCCTTTTGCCACTTTCAAAAATGTGAACAGGCCGTGTCATTTGTAGA
GAGTCAGGGCAATCGGGGACCCACCTGGGTTGCGGGTGATGGTGCAGTCC
GGGAGACTGGAGGGGGGTCTTTTGACAAGATAACTTGTCAGTGCTCCGTT
CCTGAGTCATCTACACCGGGCGCGTCCGACGCGAACCAAATTGATTACAA
CAACCCAGAAATCCTTGGCCATCGCCTGGATTTTTGTTTAACGAAGGAAA
GACTTAATTGTGGGAAGCCAACCGCTGATGCCTTTTGTGAGTCTTTCGGC
AACAGTGGCTCCACGCGGTTCGTAGAGGATCCCGCGCCCCCCCGGAATGC
GACTTGGTTTATTGGCGATCATACCCTGAATGAGGCTGGAGATCGGCATT
CGTTCCAGAGTATCACATGTGTATAG
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Synonyms
Publications