jgi.p|Nanoce1779_2|596223, mRNA_6754 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596223
Unique NamemRNA_6754
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length961
Alignment locationscaffold_17:14335..15660 -

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Properties
Property NameValue
TranscriptId596309
TrackFilteredModels2
ProteinId596223
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:14335..15660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596223gene_6754Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596223mRNA_6754-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6754CDS_6754Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6754 ID=mRNA_6754|Name=jgi.p|Nanoce1779_2|596223|organism=Nannochloropsis oceanica|type=mRNA|length=961bp
AGCAGCACCAATGGACCCGGAGGACACCGCCATTTTTGTCGACATATGCG
ACCAGCAGCTCGTGCTTCACCAGAGCCGCAAGTCTTTCAATTGCGGTTCT
ACGCTATGGAGTGCAGGGTTGGTCCTAGCACGATACCTAGAGCAAGAACG
GAGTATGTTTGACAAGGGCAAACTCACGCTGCGTGTCCTTGAGCTCGGAG
CCGGCTTGGGCCTCGCGGGCATCGTCTGTGCCTTGAAAGGAGGCTGCCGA
GAAGTCGTCTTGACAGACTTGGCATCTGTCCTGCCCTACTTGCAAAAAAA
TGCTCGCTTCATCCCAGGAGTGCGTGTGCAGGAATTTCCTTGGGGAGAGC
CTCCAGAGGAGTATGACTTAAGCGCCCCATATGATTTGGTTTTAGCGGCG
GATTGCATTTATGACGTGGCGCAGGTGGCACCCTTCCTTCATGCACTCAG
TGCCGTTGCGGGGCCTAAAACCACCATACTGATTGGTAATGAGGAAAGAG
ATAAGGTCCTACAGGCTCATTTTGTGGCAACGCTGGGAGAACATTTTACG
GTCAAATCGATCAAACGGAAGAAACTCTGTGGGTTGGAAGGATACCATGA
GCTGGTGCAGGTATGGGCGTGCAAAAAGAAGCGATGCAAGGGCGAATTGA
GTGGGTCACAGCCGCAGTCACTGCCGGATGGAAGTGCAAATGAAGAAACT
AGTGATGAAGAGGAGAAAAAGAGTAAAATGGTGGCAGAGGGGGAGGCTGC
AGCAGATGAAGGCGGGAAATGAATTTTCTAATGAAGAACGTTCTGTCGAT
GAAACGTCCGACATTCTGCTTGCATGTGTCCAGTCACGATGTAGATACAA
CATTTCAATATGTATGAGGGTGATGCGGTTTTGGCAGTGGTGTGGGGCCC
TATAAAGAATTATTTAGATCTCTTTTGTAGAAGGAGACAAAGAAAAACGC
GCGAACTGAAT
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protein sequence of jgi.p|Nanoce1779_2|596223

>mRNA_6754-protein ID=mRNA_6754-protein|Name=jgi.p|Nanoce1779_2|596223|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MDPEDTAIFVDICDQQLVLHQSRKSFNCGSTLWSAGLVLARYLEQERSMF
DKGKLTLRVLELGAGLGLAGIVCALKGGCREVVLTDLASVLPYLQKNARF
IPGVRVQEFPWGEPPEEYDLSAPYDLVLAADCIYDVAQVAPFLHALSAVA
GPKTTILIGNEERDKVLQAHFVATLGEHFTVKSIKRKKLCGLEGYHELVQ
VWACKKKRCKGELSGSQPQSLPDGSANEETSDEEEKKSKMVAEGEAAADE
GGK*
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mRNA from alignment at scaffold_17:14335..15660-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6754 ID=mRNA_6754|Name=jgi.p|Nanoce1779_2|596223|organism=Nannochloropsis oceanica|type=mRNA|length=1326bp|location=Sequence derived from alignment at scaffold_17:14335..15660- (Nannochloropsis oceanica)
AGCAGCACCAATGGACCCGGAGGACACCGCCATTTTTGTCGACATATGCG
ACCAGCAGCTCGTGCTTCACCAGAGCCGCAAGTCTTTCAATTGCGGTTCT
ACGCTATGGAGTGCAGGGTTGGTCCTAGCACGGTTAGTCCAAAGCAAGGA
GGGACCTACTTGGAAACTATTTAAAAACCCATTTTCGGTCGTATAGACTC
CCCCCCAAAAAAAAACTCACTAGCCTCTTCACACCATCAGATACCTAGAG
CAAGAACGGAGTATGTTTGACAAGGGCAAACTCACGCTGCGTGTCCTTGA
GCTCGGAGGTAAGTGGAAATGCCACGCGTGTGTGCCGCTTCGGTCATGCC
GATCTCAGGCCACACACACCCCTCTCCCCCCCCTTTTCCCCGCAGCCGGC
TTGGGCCTCGCGGGCATCGTCTGTGCCTTGAAAGGAGGCTGCCGAGAAGT
CGTCTTGACAGACTTGGCATCTGTCCTGCCCTACTTGCAAAAAAATGCTC
GCTTCATCCCAGGAGTGCGTGTGCAGGAATTTCCTTGGGGAGAGCCTCCA
GAGGAGTATGACTTAAGCGCCCCATATGATTTGGTTTTAGCGGCGGATTG
CATTTATGACGTGGCGCAGGTGGCACCCTTCCTTCATGCACTCAGGTGAG
TGAGTGAGCACTAGGTTATTGAGTTGAATCGTGGATACTTGGCCTTGGTT
TGACTTGTCGTTCAACTGACCGCGATGGACTATCAAGGGGCTCCCTACCT
TCAATTTTCAGCTCCTCTGGATCCTCTTCTTATTTTGGTGTTTCCCTCCC
CACCTGAACGAACAGTGCCGTTGCGGGGCCTAAAACCACCATACTGATTG
GTAATGAGGAAAGAGATAAGGTCCTACAGGCTCATTTTGTGGCAACGCTG
GGAGAACATTTTACGGTCAAATCGATCAAACGGAAGAAACTCTGTGGGTT
GGAAGGATACCATGAGCTGGTGCAGGTATGGGCGTGCAAAAAGAAGCGAT
GCAAGGGCGAATTGAGTGGGTCACAGCCGCAGTCACTGCCGGATGGAAGT
GCAAATGAAGAAACTAGTGATGAAGAGGAGAAAAAGAGTAAAATGGTGGC
AGAGGGGGAGGCTGCAGCAGATGAAGGCGGGAAATGAATTTTCTAATGAA
GAACGTTCTGTCGATGAAACGTCCGACATTCTGCTTGCATGTGTCCAGTC
ACGATGTAGATACAACATTTCAATATGTATGAGGGTGATGCGGTTTTGGC
AGTGGTGTGGGGCCCTATAAAGAATTATTTAGATCTCTTTTGTAGAAGGA
GACAAAGAAAAACGCGCGAACTGAAT
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Coding sequence (CDS) from alignment at scaffold_17:14335..15660-

>mRNA_6754 ID=mRNA_6754|Name=jgi.p|Nanoce1779_2|596223|organism=Nannochloropsis oceanica|type=CDS|length=3048bp|location=Sequence derived from alignment at scaffold_17:14335..15660- (Nannochloropsis oceanica)
TGCCGTTGCGGGGCCTAAAACCACCATACTGATTGGTAATGAGGAAAGAG
ATAAGGTCCTACAGGCTCATTTTGTGGCAACGCTGGGAGAACATTTTACG
GTCAAATCGATCAAACGGAAGAAACTCTGTGGGTTGGAAGGATACCATGA
GCTGGTGCAGGTATGGGCGTGCAAAAAGAAGCGATGCAAGGGCGAATTGA
GTGGGTCACAGCCGCAGTCACTGCCGGATGGAAGTGCAAATGAAGAAACT
AGTGATGAAGAGGAGAAAAAGAGTAAAATGGTGGCAGAGGGGGAGGCTGC
AGCAGATGAAGGCGGGAAATGACCGGCTTGGGCCTCGCGGGCATCGTCTG
TGCCTTGAAAGGAGGCTGCCGAGAAGTCGTCTTGACAGACTTGGCATCTG
TCCTGCCCTACTTGCAAAAAAATGCTCGCTTCATCCCAGGAGTGCGTGTG
CAGGAATTTCCTTGGGGAGAGCCTCCAGAGGAGTATGACTTAAGCGCCCC
ATATGATTTGGTTTTAGCGGCGGATTGCATTTATGACGTGGCGCAGGTGG
CACCCTTCCTTCATGCACTCAGATACCTAGAGCAAGAACGGAGTATGTTT
GACAAGGGCAAACTCACGCTGCGTGTCCTTGAGCTCGGAGATGGACCCGG
AGGACACCGCCATTTTTGTCGACATATGCGACCAGCAGCTCGTGCTTCAC
CAGAGCCGCAAGTCTTTCAATTGCGGTTCTACGCTATGGAGTGCAGGGTT
GGTCCTAGCACGTGCCGTTGCGGGGCCTAAAACCACCATACTGATTGGTA
ATGAGGAAAGAGATAAGGTCCTACAGGCTCATTTTGTGGCAACGCTGGGA
GAACATTTTACGGTCAAATCGATCAAACGGAAGAAACTCTGTGGGTTGGA
AGGATACCATGAGCTGGTGCAGGTATGGGCGTGCAAAAAGAAGCGATGCA
AGGGCGAATTGAGTGGGTCACAGCCGCAGTCACTGCCGGATGGAAGTGCA
AATGAAGAAACTAGTGATGAAGAGGAGAAAAAGAGTAAAATGGTGGCAGA
GGGGGAGGCTGCAGCAGATGAAGGCGGGAAATGACCGGCTTGGGCCTCGC
GGGCATCGTCTGTGCCTTGAAAGGAGGCTGCCGAGAAGTCGTCTTGACAG
ACTTGGCATCTGTCCTGCCCTACTTGCAAAAAAATGCTCGCTTCATCCCA
GGAGTGCGTGTGCAGGAATTTCCTTGGGGAGAGCCTCCAGAGGAGTATGA
CTTAAGCGCCCCATATGATTTGGTTTTAGCGGCGGATTGCATTTATGACG
TGGCGCAGGTGGCACCCTTCCTTCATGCACTCAGATACCTAGAGCAAGAA
CGGAGTATGTTTGACAAGGGCAAACTCACGCTGCGTGTCCTTGAGCTCGG
AGATGGACCCGGAGGACACCGCCATTTTTGTCGACATATGCGACCAGCAG
CTCGTGCTTCACCAGAGCCGCAAGTCTTTCAATTGCGGTTCTACGCTATG
GAGTGCAGGGTTGGTCCTAGCACGTGCCGTTGCGGGGCCTAAAACCACCA
TACTGATTGGTAATGAGGAAAGAGATAAGGTCCTACAGGCTCATTTTGTG
GCAACGCTGGGAGAACATTTTACGGTCAAATCGATCAAACGGAAGAAACT
CTGTGGGTTGGAAGGATACCATGAGCTGGTGCAGGTATGGGCGTGCAAAA
AGAAGCGATGCAAGGGCGAATTGAGTGGGTCACAGCCGCAGTCACTGCCG
GATGGAAGTGCAAATGAAGAAACTAGTGATGAAGAGGAGAAAAAGAGTAA
AATGGTGGCAGAGGGGGAGGCTGCAGCAGATGAAGGCGGGAAATGACCGG
CTTGGGCCTCGCGGGCATCGTCTGTGCCTTGAAAGGAGGCTGCCGAGAAG
TCGTCTTGACAGACTTGGCATCTGTCCTGCCCTACTTGCAAAAAAATGCT
CGCTTCATCCCAGGAGTGCGTGTGCAGGAATTTCCTTGGGGAGAGCCTCC
AGAGGAGTATGACTTAAGCGCCCCATATGATTTGGTTTTAGCGGCGGATT
GCATTTATGACGTGGCGCAGGTGGCACCCTTCCTTCATGCACTCAGATAC
CTAGAGCAAGAACGGAGTATGTTTGACAAGGGCAAACTCACGCTGCGTGT
CCTTGAGCTCGGAGATGGACCCGGAGGACACCGCCATTTTTGTCGACATA
TGCGACCAGCAGCTCGTGCTTCACCAGAGCCGCAAGTCTTTCAATTGCGG
TTCTACGCTATGGAGTGCAGGGTTGGTCCTAGCACGTGCCGTTGCGGGGC
CTAAAACCACCATACTGATTGGTAATGAGGAAAGAGATAAGGTCCTACAG
GCTCATTTTGTGGCAACGCTGGGAGAACATTTTACGGTCAAATCGATCAA
ACGGAAGAAACTCTGTGGGTTGGAAGGATACCATGAGCTGGTGCAGGTAT
GGGCGTGCAAAAAGAAGCGATGCAAGGGCGAATTGAGTGGGTCACAGCCG
CAGTCACTGCCGGATGGAAGTGCAAATGAAGAAACTAGTGATGAAGAGGA
GAAAAAGAGTAAAATGGTGGCAGAGGGGGAGGCTGCAGCAGATGAAGGCG
GGAAATGACCGGCTTGGGCCTCGCGGGCATCGTCTGTGCCTTGAAAGGAG
GCTGCCGAGAAGTCGTCTTGACAGACTTGGCATCTGTCCTGCCCTACTTG
CAAAAAAATGCTCGCTTCATCCCAGGAGTGCGTGTGCAGGAATTTCCTTG
GGGAGAGCCTCCAGAGGAGTATGACTTAAGCGCCCCATATGATTTGGTTT
TAGCGGCGGATTGCATTTATGACGTGGCGCAGGTGGCACCCTTCCTTCAT
GCACTCAGATACCTAGAGCAAGAACGGAGTATGTTTGACAAGGGCAAACT
CACGCTGCGTGTCCTTGAGCTCGGAGATGGACCCGGAGGACACCGCCATT
TTTGTCGACATATGCGACCAGCAGCTCGTGCTTCACCAGAGCCGCAAGTC
TTTCAATTGCGGTTCTACGCTATGGAGTGCAGGGTTGGTCCTAGCACG
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Synonyms
Publications