jgi.p|Nanoce1779_2|596219, mRNA_6753 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596219
Unique NamemRNA_6753
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1520
Alignment locationscaffold_17:12780..14299 +

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Properties
Property NameValue
TranscriptId596305
TrackFilteredModels2
ProteinId596219
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:12780..14299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596219gene_6753Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596219mRNA_6753-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6753CDS_6753Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6753 ID=mRNA_6753|Name=jgi.p|Nanoce1779_2|596219|organism=Nannochloropsis oceanica|type=mRNA|length=1520bp
CAGGGGCGCTTTCTTAGAGCAATACCTTAATTCAGAAAGAAAAAGGATGA
AAACTGTGGCGTGCTTGGACTTGTAAATGGGATTGTTGGCAAGGTGTCGA
CGACAATGTATGCTGGAGGTAATAGTCCGCGAAGGTTGGATACGTGTCAT
TTTTTTCTCGAGCCCTTTATTTTCTAACACATCCCCACCCACCACTCAAT
CCACGGATACCTGCAGGGTGCAAGGAGCGATGAGCAACGACGTCGATCAC
ACGGTTGTTGTGGTTGAAACCCCACAGCTGCCCGCCGTCATCCTCGTCCT
CGTCCTCTCCTCGGTCCTGTTCCTGTGTTCGGTAAGCGATGAATGAAGTG
CAGGAGTGGACATTCTGTCTTGTGTATGTGTGGTTGTACATGCCAAGACG
GGGGAAGCCTGACGTAGCCTCTAGAGATAATATCAGTGGCTCTCCAACGC
CCTACATTTTCATCTTTTCCTGGCTATCATCCCGCGTCCTCCTCAAGCTC
GTACACTCATTCTTGAACCCTGCGCAACACAACACATTCACAGCCTTCCA
ACTCCAACTGGGCATGGGCTTGCGTGGTGACCACGGGTATATTGCTCGCT
GGATTGACCTTTCTGTGGTTACGCCTCCGCCTCCATCGAAACAGCTCCAC
CCAAAATCGCAGCACTTCCACATGCTCTCCCGCTCTGGTCAGTGACTGCT
TCACTTGGTACCGACAATCTCACACTTCATCTTCGTCATCTCCCTCTTAT
CGCTTACGGAGAAGCGATGGAAATATGCGACATTTATTTGGACATCATTT
GGCAGTACAGGAAGCAGCGGCACTGTCGGGAGGGATGATGAACCTGGCTC
GCTTACAGCTTATGTTGACTACTCGTGATTTCACCGGAGACGACTACGAG
ATGCTCTCACGGTTAGACGAGGAGGACGAGCAGCAGCAGCAGCTACAGCA
GCAACATATGGGTTGTTCGCAAGAGGAGTTGGACCGCTTGCCTGTGTATA
CGGTGGAGAGTGAATGGAATGGTCATAGTGACAATTCCAAGTGTCTGATT
TGTTTGAGCGATTTCGCTAAGGGGGATGTGGTGCGGATTTTGCCTTGTTT
GCATCAGTTCCACCAGGCAGAGTGTGTGGACCCATGGTTGAGACGAAAGA
TGCTTTGTCCGGTGTGTAAGATTGCCTTCTAGGCAGGGTAGGAGGAAGTT
GGTTGCCTTCATATGAGGAAGAGGAAGAGGAGGGAGAGATGAGGAGGAGG
ATGAGGATGAGGAGAAGGATGATGATGATGATGATTAGAAGAAGGGAGAA
AAATATTGTACATAGAAAATAGACGCCTTGCATATATAACAGCATGTGAA
GGGGGGAGAGGAAAGAGATGAGAGCCACAAAAAGACCGACACGTTAATAT
ACACTGTTCATTCGCTGTCTTTCCCCCCCCTCCCCCCACCAGTTTATGTG
ACATTCTCGTCCATCGGTAAAAGAAACGAAGCAAAAAGTGTTTGTGAAAG
CTCAAACCGCGAATACGTAC
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protein sequence of jgi.p|Nanoce1779_2|596219

>mRNA_6753-protein ID=mRNA_6753-protein|Name=jgi.p|Nanoce1779_2|596219|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MRHLFGHHLAVQEAAALSGGMMNLARLQLMLTTRDFTGDDYEMLSRLDEE
DEQQQQLQQQHMGCSQEELDRLPVYTVESEWNGHSDNSKCLICLSDFAKG
DVVRILPCLHQFHQAECVDPWLRRKMLCPVCKIAF*
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mRNA from alignment at scaffold_17:12780..14299+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6753 ID=mRNA_6753|Name=jgi.p|Nanoce1779_2|596219|organism=Nannochloropsis oceanica|type=mRNA|length=1520bp|location=Sequence derived from alignment at scaffold_17:12780..14299+ (Nannochloropsis oceanica)
CAGGGGCGCTTTCTTAGAGCAATACCTTAATTCAGAAAGAAAAAGGATGA
AAACTGTGGCGTGCTTGGACTTGTAAATGGGATTGTTGGCAAGGTGTCGA
CGACAATGTATGCTGGAGGTAATAGTCCGCGAAGGTTGGATACGTGTCAT
TTTTTTCTCGAGCCCTTTATTTTCTAACACATCCCCACCCACCACTCAAT
CCACGGATACCTGCAGGGTGCAAGGAGCGATGAGCAACGACGTCGATCAC
ACGGTTGTTGTGGTTGAAACCCCACAGCTGCCCGCCGTCATCCTCGTCCT
CGTCCTCTCCTCGGTCCTGTTCCTGTGTTCGGTAAGCGATGAATGAAGTG
CAGGAGTGGACATTCTGTCTTGTGTATGTGTGGTTGTACATGCCAAGACG
GGGGAAGCCTGACGTAGCCTCTAGAGATAATATCAGTGGCTCTCCAACGC
CCTACATTTTCATCTTTTCCTGGCTATCATCCCGCGTCCTCCTCAAGCTC
GTACACTCATTCTTGAACCCTGCGCAACACAACACATTCACAGCCTTCCA
ACTCCAACTGGGCATGGGCTTGCGTGGTGACCACGGGTATATTGCTCGCT
GGATTGACCTTTCTGTGGTTACGCCTCCGCCTCCATCGAAACAGCTCCAC
CCAAAATCGCAGCACTTCCACATGCTCTCCCGCTCTGGTCAGTGACTGCT
TCACTTGGTACCGACAATCTCACACTTCATCTTCGTCATCTCCCTCTTAT
CGCTTACGGAGAAGCGATGGAAATATGCGACATTTATTTGGACATCATTT
GGCAGTACAGGAAGCAGCGGCACTGTCGGGAGGGATGATGAACCTGGCTC
GCTTACAGCTTATGTTGACTACTCGTGATTTCACCGGAGACGACTACGAG
ATGCTCTCACGGTTAGACGAGGAGGACGAGCAGCAGCAGCAGCTACAGCA
GCAACATATGGGTTGTTCGCAAGAGGAGTTGGACCGCTTGCCTGTGTATA
CGGTGGAGAGTGAATGGAATGGTCATAGTGACAATTCCAAGTGTCTGATT
TGTTTGAGCGATTTCGCTAAGGGGGATGTGGTGCGGATTTTGCCTTGTTT
GCATCAGTTCCACCAGGCAGAGTGTGTGGACCCATGGTTGAGACGAAAGA
TGCTTTGTCCGGTGTGTAAGATTGCCTTCTAGGCAGGGTAGGAGGAAGTT
GGTTGCCTTCATATGAGGAAGAGGAAGAGGAGGGAGAGATGAGGAGGAGG
ATGAGGATGAGGAGAAGGATGATGATGATGATGATTAGAAGAAGGGAGAA
AAATATTGTACATAGAAAATAGACGCCTTGCATATATAACAGCATGTGAA
GGGGGGAGAGGAAAGAGATGAGAGCCACAAAAAGACCGACACGTTAATAT
ACACTGTTCATTCGCTGTCTTTCCCCCCCCTCCCCCCACCAGTTTATGTG
ACATTCTCGTCCATCGGTAAAAGAAACGAAGCAAAAAGTGTTTGTGAAAG
CTCAAACCGCGAATACGTAC
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Coding sequence (CDS) from alignment at scaffold_17:12780..14299+

>mRNA_6753 ID=mRNA_6753|Name=jgi.p|Nanoce1779_2|596219|organism=Nannochloropsis oceanica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_17:12780..14299+ (Nannochloropsis oceanica)
ATGCGACATTTATTTGGACATCATTTGGCAGTACAGGAAGCAGCGGCACT
GTCGGGAGGGATGATGAACCTGGCTCGCTTACAGCTTATGTTGACTACTC
GTGATTTCACCGGAGACGACTACGAGATGCTCTCACGGTTAGACGAGGAG
GACGAGCAGCAGCAGCAGCTACAGCAGCAACATATGGGTTGTTCGCAAGA
GGAGTTGGACCGCTTGCCTGTGTATACGGTGGAGAGTGAATGGAATGGTC
ATAGTGACAATTCCAAGTGTCTGATTTGTTTGAGCGATTTCGCTAAGGGG
GATGTGGTGCGGATTTTGCCTTGTTTGCATCAGTTCCACCAGGCAGAGTG
TGTGGACCCATGGTTGAGACGAAAGATGCTTTGTCCGGTGTGTAAGATTG
CCTTCTAG
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Synonyms
Publications