jgi.p|Nanoce1779_2|650851, mRNA_6751 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|650851
Unique NamemRNA_6751
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1108
Alignment locationscaffold_17:7000..8107 -

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Properties
Property NameValue
TranscriptId650937
TrackFilteredModels2
ProteinId650851
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:7000..8107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|650851gene_6751Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|650851mRNA_6751-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6751CDS_6751Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6751 ID=mRNA_6751|Name=jgi.p|Nanoce1779_2|650851|organism=Nannochloropsis oceanica|type=mRNA|length=1108bp
CCGCTTCTCTTAAGGAATCATGAAGATGAAAATTGAGGAGGCGTACGCAG
CGCTGGAGATTCGCATGGGGGCAAGCGAGGAAGAGGTCAAGAAGGCCTTC
CGCGCGCGCGCACTGAAGACTCATCCTGATCGGAACCCTAACAACCCAAA
TGCCAAGGAAGAATTCCAGAAGATCAATAATGCATATAAAAGAATAATTG
CGGCTCAGGACGAGAGCAGCAGTGATGAAGAAGGAGGAGACGGGAGCAGC
TACATGCCGGAAGAGGAACTCTTTGACTTGTTTGCCACGATGTTTGGAGG
GCAAGGAGGGCCCTTTGGGGTTATGGGTGGTCATTTTGACATGCCCTTCG
GCGTAAATTTTAGTTATAGTGGAGGAGGGGGTGCAGAGTATTCTTTTTCG
GGGTCGAGCCGAGGAGGGAGGTACGTGGTGGAGTCGGACTCAGAGGAGGA
GGACAGCGACGAGTATTATAGCGAGGACGACGAGAGTGAGGATGATGACG
ACGACGATTTGTTTCAGCAGTTGCTCTTTGAGCATATGATGATGGGGAGG
GGCATGGGGGGAATAGGGGCCATGGGGGGACGGAGGGGCGGGGGGAGGGG
AAGTGGTGGGGGAAGGAGTGGAGGCCCGAGTCAACGGGGAGCCGGTGGAA
GAGGAGGAAAGGGAGGAGGGGGCTCTCGGTATGTGACGGTGGAGGGTGTG
ATGGAAGAGTTGATGGGTGGTGCAATTCCGGGAATGGGAATTAGGGATAT
GGGAGGAAGGAGTGGTAGTGGGGCCGGTCGTCGTGGACGCCATGGCGCGG
TTCATGCGCAGCAGCACTGGGGGAGGCAGAGGCAGGAGGAAGAGGAGGTG
GAGCATCAGGGTGGAGTGAAGCCGGGGTCGGCAGCAAAGCGACGAGAGAG
GCGAAAGAGAGCACAGGGAAAGTCTGCCGGTGTAGGTGGAGGAGGAGGGA
AAGGAGGGGAGGCGGTAGCAGCACCGACCCCAAAGCCGGCAACGGTCTCT
TCGTCTGGTGGTAGTGATCGCAAGAAGAAGAACAAGAAGAATAGAGGATA
AAGTGGTGGTGTTGATAAAGACGAGGGGACGGAAATGAGGGGATGTGTGT
CTAGATAG
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protein sequence of jgi.p|Nanoce1779_2|650851

>mRNA_6751-protein ID=mRNA_6751-protein|Name=jgi.p|Nanoce1779_2|650851|organism=Nannochloropsis oceanica|type=polypeptide|length=344bp
MKMKIEEAYAALEIRMGASEEEVKKAFRARALKTHPDRNPNNPNAKEEFQ
KINNAYKRIIAAQDESSSDEEGGDGSSYMPEEELFDLFATMFGGQGGPFG
VMGGHFDMPFGVNFSYSGGGGAEYSFSGSSRGGRYVVESDSEEEDSDEYY
SEDDESEDDDDDDLFQQLLFEHMMMGRGMGGIGAMGGRRGGGRGSGGGRS
GGPSQRGAGGRGGKGGGGSRYVTVEGVMEELMGGAIPGMGIRDMGGRSGS
GAGRRGRHGAVHAQQHWGRQRQEEEEVEHQGGVKPGSAAKRRERRKRAQG
KSAGVGGGGGKGGEAVAAPTPKPATVSSSGGSDRKKKNKKNRG*
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mRNA from alignment at scaffold_17:7000..8107-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6751 ID=mRNA_6751|Name=jgi.p|Nanoce1779_2|650851|organism=Nannochloropsis oceanica|type=mRNA|length=1108bp|location=Sequence derived from alignment at scaffold_17:7000..8107- (Nannochloropsis oceanica)
CCGCTTCTCTTAAGGAATCATGAAGATGAAAATTGAGGAGGCGTACGCAG
CGCTGGAGATTCGCATGGGGGCAAGCGAGGAAGAGGTCAAGAAGGCCTTC
CGCGCGCGCGCACTGAAGACTCATCCTGATCGGAACCCTAACAACCCAAA
TGCCAAGGAAGAATTCCAGAAGATCAATAATGCATATAAAAGAATAATTG
CGGCTCAGGACGAGAGCAGCAGTGATGAAGAAGGAGGAGACGGGAGCAGC
TACATGCCGGAAGAGGAACTCTTTGACTTGTTTGCCACGATGTTTGGAGG
GCAAGGAGGGCCCTTTGGGGTTATGGGTGGTCATTTTGACATGCCCTTCG
GCGTAAATTTTAGTTATAGTGGAGGAGGGGGTGCAGAGTATTCTTTTTCG
GGGTCGAGCCGAGGAGGGAGGTACGTGGTGGAGTCGGACTCAGAGGAGGA
GGACAGCGACGAGTATTATAGCGAGGACGACGAGAGTGAGGATGATGACG
ACGACGATTTGTTTCAGCAGTTGCTCTTTGAGCATATGATGATGGGGAGG
GGCATGGGGGGAATAGGGGCCATGGGGGGACGGAGGGGCGGGGGGAGGGG
AAGTGGTGGGGGAAGGAGTGGAGGCCCGAGTCAACGGGGAGCCGGTGGAA
GAGGAGGAAAGGGAGGAGGGGGCTCTCGGTATGTGACGGTGGAGGGTGTG
ATGGAAGAGTTGATGGGTGGTGCAATTCCGGGAATGGGAATTAGGGATAT
GGGAGGAAGGAGTGGTAGTGGGGCCGGTCGTCGTGGACGCCATGGCGCGG
TTCATGCGCAGCAGCACTGGGGGAGGCAGAGGCAGGAGGAAGAGGAGGTG
GAGCATCAGGGTGGAGTGAAGCCGGGGTCGGCAGCAAAGCGACGAGAGAG
GCGAAAGAGAGCACAGGGAAAGTCTGCCGGTGTAGGTGGAGGAGGAGGGA
AAGGAGGGGAGGCGGTAGCAGCACCGACCCCAAAGCCGGCAACGGTCTCT
TCGTCTGGTGGTAGTGATCGCAAGAAGAAGAACAAGAAGAATAGAGGATA
AAGTGGTGGTGTTGATAAAGACGAGGGGACGGAAATGAGGGGATGTGTGT
CTAGATAG
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Coding sequence (CDS) from alignment at scaffold_17:7000..8107-

>mRNA_6751 ID=mRNA_6751|Name=jgi.p|Nanoce1779_2|650851|organism=Nannochloropsis oceanica|type=CDS|length=1032bp|location=Sequence derived from alignment at scaffold_17:7000..8107- (Nannochloropsis oceanica)
ATGAAGATGAAAATTGAGGAGGCGTACGCAGCGCTGGAGATTCGCATGGG
GGCAAGCGAGGAAGAGGTCAAGAAGGCCTTCCGCGCGCGCGCACTGAAGA
CTCATCCTGATCGGAACCCTAACAACCCAAATGCCAAGGAAGAATTCCAG
AAGATCAATAATGCATATAAAAGAATAATTGCGGCTCAGGACGAGAGCAG
CAGTGATGAAGAAGGAGGAGACGGGAGCAGCTACATGCCGGAAGAGGAAC
TCTTTGACTTGTTTGCCACGATGTTTGGAGGGCAAGGAGGGCCCTTTGGG
GTTATGGGTGGTCATTTTGACATGCCCTTCGGCGTAAATTTTAGTTATAG
TGGAGGAGGGGGTGCAGAGTATTCTTTTTCGGGGTCGAGCCGAGGAGGGA
GGTACGTGGTGGAGTCGGACTCAGAGGAGGAGGACAGCGACGAGTATTAT
AGCGAGGACGACGAGAGTGAGGATGATGACGACGACGATTTGTTTCAGCA
GTTGCTCTTTGAGCATATGATGATGGGGAGGGGCATGGGGGGAATAGGGG
CCATGGGGGGACGGAGGGGCGGGGGGAGGGGAAGTGGTGGGGGAAGGAGT
GGAGGCCCGAGTCAACGGGGAGCCGGTGGAAGAGGAGGAAAGGGAGGAGG
GGGCTCTCGGTATGTGACGGTGGAGGGTGTGATGGAAGAGTTGATGGGTG
GTGCAATTCCGGGAATGGGAATTAGGGATATGGGAGGAAGGAGTGGTAGT
GGGGCCGGTCGTCGTGGACGCCATGGCGCGGTTCATGCGCAGCAGCACTG
GGGGAGGCAGAGGCAGGAGGAAGAGGAGGTGGAGCATCAGGGTGGAGTGA
AGCCGGGGTCGGCAGCAAAGCGACGAGAGAGGCGAAAGAGAGCACAGGGA
AAGTCTGCCGGTGTAGGTGGAGGAGGAGGGAAAGGAGGGGAGGCGGTAGC
AGCACCGACCCCAAAGCCGGCAACGGTCTCTTCGTCTGGTGGTAGTGATC
GCAAGAAGAAGAACAAGAAGAATAGAGGATAA
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Synonyms
Publications