jgi.p|Nanoce1779_2|573754, mRNA_675 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573754
Unique NamemRNA_675
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length813
Alignment locationscaffold_2:163702..164514 +

Link to JBrowse

Properties
Property NameValue
TranscriptId573840
TrackFilteredModels2
ProteinId573754
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:163702..164514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573754gene_675Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573754mRNA_675-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_675CDS_675Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_675 ID=mRNA_675|Name=jgi.p|Nanoce1779_2|573754|organism=Nannochloropsis oceanica|type=mRNA|length=813bp
CAACAGGATCACCCGCCAGCCCTGTCATCAACCATGAAGGTAGTAGCTTC
GTTGCTGGCCCTCGTGGTGCTGCCTTTGACATCATCCTTCTTTGTCGTAC
CTGCCCCTGCGTGCACACAGCAGCAGCAACAGCAGCAGCTTGCGCGGGGT
CTGGTGGCGCTGGAAGCGGAGGGGGGCATGTCCAGAAGAGACGCCTTCCT
GAAGACGGCGGGCCTGCTCTCTCTTGGCCTCGTCGCAGGCAGCACTGGGG
GGCTACCTTTCCTGCCACGGGCAGGGGCCGAGTCCTTGCCAAGTGGGATT
ACTTATGAGGTGGTTGAGAATGGCAACGGTCCGGTGCCCAAGGTGGGGGA
GCTGGCCGCCATCCGCTTCACAGGCGCATACAAGGGTAATGTGTTCGACG
ACCTGTACAAGACCAAGGAACCTCTCTACTTCCGTGTGGGGGGCAACACC
CTCCTGAAAGGCATCGAGGAGGCGGTCAAGGTCATGAAAGTTGGAGATCG
TTGGAAGCTCACAATTCCGGGCGAGCTGGCATTCGGTGCCAAGGGCCGGT
CGGCCTCCCCGGGCAAGCCCCGTATTCCCCCTATGGCGGCAGTGGAGTAC
GATTTGACACTAGTGGCGCTGCCAGGCCGTGAGACGGAGATTTTGGATCT
AGACAACTTTGATGAGAATGCGCCCGCGTCGGATGACTCGGACCCAAACA
AGGGGTTGCGATTTTAGGTTGAGAAGCGGAGGGAGGGAAGAAGGGAGGGG
GGAAGTGAGGGAGGTTTTTGTAGTTTCCAAGACCTACAATAACAGTGATT
TGCTTTCCTAAGT
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protein sequence of jgi.p|Nanoce1779_2|573754

>mRNA_675-protein ID=mRNA_675-protein|Name=jgi.p|Nanoce1779_2|573754|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MKVVASLLALVVLPLTSSFFVVPAPACTQQQQQQQLARGLVALEAEGGMS
RRDAFLKTAGLLSLGLVAGSTGGLPFLPRAGAESLPSGITYEVVENGNGP
VPKVGELAAIRFTGAYKGNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKV
MKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAAVEYDLTLVALPGRE
TEILDLDNFDENAPASDDSDPNKGLRF*
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mRNA from alignment at scaffold_2:163702..164514+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_675 ID=mRNA_675|Name=jgi.p|Nanoce1779_2|573754|organism=Nannochloropsis oceanica|type=mRNA|length=813bp|location=Sequence derived from alignment at scaffold_2:163702..164514+ (Nannochloropsis oceanica)
CAACAGGATCACCCGCCAGCCCTGTCATCAACCATGAAGGTAGTAGCTTC
GTTGCTGGCCCTCGTGGTGCTGCCTTTGACATCATCCTTCTTTGTCGTAC
CTGCCCCTGCGTGCACACAGCAGCAGCAACAGCAGCAGCTTGCGCGGGGT
CTGGTGGCGCTGGAAGCGGAGGGGGGCATGTCCAGAAGAGACGCCTTCCT
GAAGACGGCGGGCCTGCTCTCTCTTGGCCTCGTCGCAGGCAGCACTGGGG
GGCTACCTTTCCTGCCACGGGCAGGGGCCGAGTCCTTGCCAAGTGGGATT
ACTTATGAGGTGGTTGAGAATGGCAACGGTCCGGTGCCCAAGGTGGGGGA
GCTGGCCGCCATCCGCTTCACAGGCGCATACAAGGGTAATGTGTTCGACG
ACCTGTACAAGACCAAGGAACCTCTCTACTTCCGTGTGGGGGGCAACACC
CTCCTGAAAGGCATCGAGGAGGCGGTCAAGGTCATGAAAGTTGGAGATCG
TTGGAAGCTCACAATTCCGGGCGAGCTGGCATTCGGTGCCAAGGGCCGGT
CGGCCTCCCCGGGCAAGCCCCGTATTCCCCCTATGGCGGCAGTGGAGTAC
GATTTGACACTAGTGGCGCTGCCAGGCCGTGAGACGGAGATTTTGGATCT
AGACAACTTTGATGAGAATGCGCCCGCGTCGGATGACTCGGACCCAAACA
AGGGGTTGCGATTTTAGGTTGAGAAGCGGAGGGAGGGAAGAAGGGAGGGG
GGAAGTGAGGGAGGTTTTTGTAGTTTCCAAGACCTACAATAACAGTGATT
TGCTTTCCTAAGT
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Coding sequence (CDS) from alignment at scaffold_2:163702..164514+

>mRNA_675 ID=mRNA_675|Name=jgi.p|Nanoce1779_2|573754|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_2:163702..164514+ (Nannochloropsis oceanica)
ATGAAGGTAGTAGCTTCGTTGCTGGCCCTCGTGGTGCTGCCTTTGACATC
ATCCTTCTTTGTCGTACCTGCCCCTGCGTGCACACAGCAGCAGCAACAGC
AGCAGCTTGCGCGGGGTCTGGTGGCGCTGGAAGCGGAGGGGGGCATGTCC
AGAAGAGACGCCTTCCTGAAGACGGCGGGCCTGCTCTCTCTTGGCCTCGT
CGCAGGCAGCACTGGGGGGCTACCTTTCCTGCCACGGGCAGGGGCCGAGT
CCTTGCCAAGTGGGATTACTTATGAGGTGGTTGAGAATGGCAACGGTCCG
GTGCCCAAGGTGGGGGAGCTGGCCGCCATCCGCTTCACAGGCGCATACAA
GGGTAATGTGTTCGACGACCTGTACAAGACCAAGGAACCTCTCTACTTCC
GTGTGGGGGGCAACACCCTCCTGAAAGGCATCGAGGAGGCGGTCAAGGTC
ATGAAAGTTGGAGATCGTTGGAAGCTCACAATTCCGGGCGAGCTGGCATT
CGGTGCCAAGGGCCGGTCGGCCTCCCCGGGCAAGCCCCGTATTCCCCCTA
TGGCGGCAGTGGAGTACGATTTGACACTAGTGGCGCTGCCAGGCCGTGAG
ACGGAGATTTTGGATCTAGACAACTTTGATGAGAATGCGCCCGCGTCGGA
TGACTCGGACCCAAACAAGGGGTTGCGATTTTAG
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Synonyms
Publications