jgi.p|Nanoce1779_2|596203, mRNA_6749 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596203
Unique NamemRNA_6749
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1432
Alignment locationscaffold_17:3231..4662 -

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Properties
Property NameValue
TranscriptId596289
TrackFilteredModels2
ProteinId596203
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:3231..4662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596203gene_6749Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596203mRNA_6749-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6749CDS_6749Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6749 ID=mRNA_6749|Name=jgi.p|Nanoce1779_2|596203|organism=Nannochloropsis oceanica|type=mRNA|length=1432bp
ACAGGCGACCTCCCCCCCTCCCCCTCCTGGCATCATCATCACACGCAATA
ACATGTATTGTGGGGACGAGGTCTTCTCCGTGGTGGGCGATTTAGGCACG
GCCACCAGCCGCTTTGGATATGCCGGGGAGGACTTGCCCAAAGCTGTCTT
TCCCTCGGCCGTAGGACATGTGGTGGATGCGGTGGAGGGTGGCAGGAAGA
AGGAAAAGGCAGGCGACGCAGGGGCATCGAACAGTATGGACGTAGATGAG
GCCGCCGCTGCCGGAAGGATCGGTAGCAATGCTGCAGCTGTACTTGGAGA
CGCGAAAATTGGACTTCGACGAACGGATTTAGAACTATCTTTTCCCATGG
AGAACGGGCACGTGCGGAATTGGGATGCAGTGGAGAGGATTTGGGCCCAC
GCGTTTGGACAAATAGCCGTACGGGACGAAGCCAAGGGTGTTCCTTTCAT
GTACGCCTTGCCCACGTGGGCCACGCGCGCCGAGAGTCAAACAGTGATGG
AGCTGGCTTTTGAAAGGTTTGAAGTGGGTGCTTTGTATTTGGCGCGGTCG
GCCATGTTGAGTGCGTTCTCCACCGGTCGGGCGAGTGGGATTGTGTGTGA
TTGCGGCGCTGGCTCGACGAGTGCTGTGCCGTTATTGGATGGATATGTGC
TAAAGCAGCTGGTGGGGAGAAGTGAGAGGGGCGGGGACTGGTTGGATGGA
AAGGTTGGGGAGTGGTTGGCCTCGAAAAAAGTAACGGTGAGACCGTTTGG
GCAGCATCAGGGGGTGGTGGCAGAAAAGATGCCTCCGCATTACCGGCAGT
TCCAGGAACAACGCGTGCTGCGCGATGTGAAGGAGAGTTGTTGTTTGGTC
CCGCAGGCAGATAGTGACGATGGGGCTATGTTTGATGTGGAGGATAACGA
CCCGGAGGACGGAGTATACGAGCTCCCCGACGGCACCAAGGTCAAAATTG
ACAAGGCCCTCCGGCGGGTGCCGGAATCTGTCATGCTCCCAGGGAATGAC
AGTGCTTTTTCCTCCTCTTCCACGTCGTCATCAATACCAGGACCGCAGGA
TCTACCGGGGTTGGTGTACGCAGCGGTGGAGAAGGCGGATGTGGACGTGC
GGAAAGAGTTGTTGGGAAACGTGATTTTGACGGGAGCGGGTAGCTGTTTC
CGTGGAGCAGCAGAACGATTGCAATTTGAACTGACAGAGAAAGTGCCAGT
GGCGTACAAGGTGAAGGTCGTGACGGCCACGCCGTTGGAGAGGCGGTTTA
GTGCGTGGATTGGAGGGTCCATTTTAGCGTCCTTAGGCTCGTTTCAGCAG
CTGTGGCTATCCAAGCTAGAGTATGAGGAAATGGGAGCCGAAAGGGCTCT
CAAGGAGAGGTTTCACTGAATGGGGGGGGATCAGAAATGATGACGACAAA
GTAAAAAGTAATGAAAAGAGCGTACGTATGGT
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protein sequence of jgi.p|Nanoce1779_2|596203

>mRNA_6749-protein ID=mRNA_6749-protein|Name=jgi.p|Nanoce1779_2|596203|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MYCGDEVFSVVGDLGTATSRFGYAGEDLPKAVFPSAVGHVVDAVEGGRKK
EKAGDAGASNSMDVDEAAAAGRIGSNAAAVLGDAKIGLRRTDLELSFPME
NGHVRNWDAVERIWAHAFGQIAVRDEAKGVPFMYALPTWATRAESQTVME
LAFERFEVGALYLARSAMLSAFSTGRASGIVCDCGAGSTSAVPLLDGYVL
KQLVGRSERGGDWLDGKVGEWLASKKVTVRPFGQHQGVVAEKMPPHYRQF
QEQRVLRDVKESCCLVPQADSDDGAMFDVEDNDPEDGVYELPDGTKVKID
KALRRVPESVMLPGNDSAFSSSSTSSSIPGPQDLPGLVYAAVEKADVDVR
KELLGNVILTGAGSCFRGAAERLQFELTEKVPVAYKVKVVTATPLERRFS
AWIGGSILASLGSFQQLWLSKLEYEEMGAERALKERFH*
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mRNA from alignment at scaffold_17:3231..4662-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6749 ID=mRNA_6749|Name=jgi.p|Nanoce1779_2|596203|organism=Nannochloropsis oceanica|type=mRNA|length=1432bp|location=Sequence derived from alignment at scaffold_17:3231..4662- (Nannochloropsis oceanica)
ACAGGCGACCTCCCCCCCTCCCCCTCCTGGCATCATCATCACACGCAATA
ACATGTATTGTGGGGACGAGGTCTTCTCCGTGGTGGGCGATTTAGGCACG
GCCACCAGCCGCTTTGGATATGCCGGGGAGGACTTGCCCAAAGCTGTCTT
TCCCTCGGCCGTAGGACATGTGGTGGATGCGGTGGAGGGTGGCAGGAAGA
AGGAAAAGGCAGGCGACGCAGGGGCATCGAACAGTATGGACGTAGATGAG
GCCGCCGCTGCCGGAAGGATCGGTAGCAATGCTGCAGCTGTACTTGGAGA
CGCGAAAATTGGACTTCGACGAACGGATTTAGAACTATCTTTTCCCATGG
AGAACGGGCACGTGCGGAATTGGGATGCAGTGGAGAGGATTTGGGCCCAC
GCGTTTGGACAAATAGCCGTACGGGACGAAGCCAAGGGTGTTCCTTTCAT
GTACGCCTTGCCCACGTGGGCCACGCGCGCCGAGAGTCAAACAGTGATGG
AGCTGGCTTTTGAAAGGTTTGAAGTGGGTGCTTTGTATTTGGCGCGGTCG
GCCATGTTGAGTGCGTTCTCCACCGGTCGGGCGAGTGGGATTGTGTGTGA
TTGCGGCGCTGGCTCGACGAGTGCTGTGCCGTTATTGGATGGATATGTGC
TAAAGCAGCTGGTGGGGAGAAGTGAGAGGGGCGGGGACTGGTTGGATGGA
AAGGTTGGGGAGTGGTTGGCCTCGAAAAAAGTAACGGTGAGACCGTTTGG
GCAGCATCAGGGGGTGGTGGCAGAAAAGATGCCTCCGCATTACCGGCAGT
TCCAGGAACAACGCGTGCTGCGCGATGTGAAGGAGAGTTGTTGTTTGGTC
CCGCAGGCAGATAGTGACGATGGGGCTATGTTTGATGTGGAGGATAACGA
CCCGGAGGACGGAGTATACGAGCTCCCCGACGGCACCAAGGTCAAAATTG
ACAAGGCCCTCCGGCGGGTGCCGGAATCTGTCATGCTCCCAGGGAATGAC
AGTGCTTTTTCCTCCTCTTCCACGTCGTCATCAATACCAGGACCGCAGGA
TCTACCGGGGTTGGTGTACGCAGCGGTGGAGAAGGCGGATGTGGACGTGC
GGAAAGAGTTGTTGGGAAACGTGATTTTGACGGGAGCGGGTAGCTGTTTC
CGTGGAGCAGCAGAACGATTGCAATTTGAACTGACAGAGAAAGTGCCAGT
GGCGTACAAGGTGAAGGTCGTGACGGCCACGCCGTTGGAGAGGCGGTTTA
GTGCGTGGATTGGAGGGTCCATTTTAGCGTCCTTAGGCTCGTTTCAGCAG
CTGTGGCTATCCAAGCTAGAGTATGAGGAAATGGGAGCCGAAAGGGCTCT
CAAGGAGAGGTTTCACTGAATGGGGGGGGATCAGAAATGATGACGACAAA
GTAAAAAGTAATGAAAAGAGCGTACGTATGGT
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Coding sequence (CDS) from alignment at scaffold_17:3231..4662-

>mRNA_6749 ID=mRNA_6749|Name=jgi.p|Nanoce1779_2|596203|organism=Nannochloropsis oceanica|type=CDS|length=1317bp|location=Sequence derived from alignment at scaffold_17:3231..4662- (Nannochloropsis oceanica)
ATGTATTGTGGGGACGAGGTCTTCTCCGTGGTGGGCGATTTAGGCACGGC
CACCAGCCGCTTTGGATATGCCGGGGAGGACTTGCCCAAAGCTGTCTTTC
CCTCGGCCGTAGGACATGTGGTGGATGCGGTGGAGGGTGGCAGGAAGAAG
GAAAAGGCAGGCGACGCAGGGGCATCGAACAGTATGGACGTAGATGAGGC
CGCCGCTGCCGGAAGGATCGGTAGCAATGCTGCAGCTGTACTTGGAGACG
CGAAAATTGGACTTCGACGAACGGATTTAGAACTATCTTTTCCCATGGAG
AACGGGCACGTGCGGAATTGGGATGCAGTGGAGAGGATTTGGGCCCACGC
GTTTGGACAAATAGCCGTACGGGACGAAGCCAAGGGTGTTCCTTTCATGT
ACGCCTTGCCCACGTGGGCCACGCGCGCCGAGAGTCAAACAGTGATGGAG
CTGGCTTTTGAAAGGTTTGAAGTGGGTGCTTTGTATTTGGCGCGGTCGGC
CATGTTGAGTGCGTTCTCCACCGGTCGGGCGAGTGGGATTGTGTGTGATT
GCGGCGCTGGCTCGACGAGTGCTGTGCCGTTATTGGATGGATATGTGCTA
AAGCAGCTGGTGGGGAGAAGTGAGAGGGGCGGGGACTGGTTGGATGGAAA
GGTTGGGGAGTGGTTGGCCTCGAAAAAAGTAACGGTGAGACCGTTTGGGC
AGCATCAGGGGGTGGTGGCAGAAAAGATGCCTCCGCATTACCGGCAGTTC
CAGGAACAACGCGTGCTGCGCGATGTGAAGGAGAGTTGTTGTTTGGTCCC
GCAGGCAGATAGTGACGATGGGGCTATGTTTGATGTGGAGGATAACGACC
CGGAGGACGGAGTATACGAGCTCCCCGACGGCACCAAGGTCAAAATTGAC
AAGGCCCTCCGGCGGGTGCCGGAATCTGTCATGCTCCCAGGGAATGACAG
TGCTTTTTCCTCCTCTTCCACGTCGTCATCAATACCAGGACCGCAGGATC
TACCGGGGTTGGTGTACGCAGCGGTGGAGAAGGCGGATGTGGACGTGCGG
AAAGAGTTGTTGGGAAACGTGATTTTGACGGGAGCGGGTAGCTGTTTCCG
TGGAGCAGCAGAACGATTGCAATTTGAACTGACAGAGAAAGTGCCAGTGG
CGTACAAGGTGAAGGTCGTGACGGCCACGCCGTTGGAGAGGCGGTTTAGT
GCGTGGATTGGAGGGTCCATTTTAGCGTCCTTAGGCTCGTTTCAGCAGCT
GTGGCTATCCAAGCTAGAGTATGAGGAAATGGGAGCCGAAAGGGCTCTCA
AGGAGAGGTTTCACTGA
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Synonyms
Publications