jgi.p|Nanoce1779_2|596200, mRNA_6748 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596200
Unique NamemRNA_6748
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1285
Alignment locationscaffold_17:1811..3229 +

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Properties
Property NameValue
TranscriptId596286
TrackFilteredModels2
ProteinId596200
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:1811..3229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596200gene_6748Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596200mRNA_6748-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6748CDS_6748Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6748 ID=mRNA_6748|Name=jgi.p|Nanoce1779_2|596200|organism=Nannochloropsis oceanica|type=mRNA|length=1285bp
AGACATGCAGTGACCGCGGCATAATAGTGTGGTGGTGGTGACCTCTGCGC
AGATGGACGATTCATGAAAGTCTCCTAGAGCCAACTCCAAGCATTACGCC
CCACCCCTCGCCTTATCGCCCGCGCCATGTCCGACCCCTCCCAAAAGCCG
CCCGTAGCAGGAGTAGGAGCAGCAGCGGGAGCACGCGGAGGAGGAAGTGG
CGGAGCACTCCTGAGATACGGAGGTGGCGTTGGTGCACGTGGAGGGAGGG
TGTACAGTGCAGGAAGGTCATGGACGACAACACCCTCATCTCTTCCACCA
TCAACCAACCCTTTGCATGCATACGCGGTCCCTAACCCCCATTATCATTC
CTACCGAGGCGGTGATGGAGGCCGTGGTCCCTGGACACCTCGTGGGGGAG
GACGACAGCTTTCTACGTACCACCAAAACAACCAATTATACTACCCTCCT
TCACCATCTCCCATGGCCCGTCCACACCGAAATAAGTCCTTGATTATCAC
TTATCCTGCCCCTGCCATGGCTCTCCCTGTTGCGCCTGCGCTTCCATTAA
CAACTGGAAATTTGCTCAATGCTGACACAAAAATGCTGCCTGCAGAGGAG
AAGGAGACAAGGGCAGCAGCAACAGCAGCTTCAGCAACAAGCAAGGACAT
ATGTGACGACGACGTCCAAGTGGACAGAGAGATCCTTGAGATGATGGCAA
CTTACAGGAACGCCTTAGGAAGCATGGGCAGGGGAGCGTTCACTTCCCAT
CCTCTCTTCTTTCAATCATCCAATGGAAATAATCTCTCTCCTTCTTCTTT
CTCCACGCGGAAGCGCTCCCTGGAGGAAGCAGCTCGAGGAGGACACGAGG
AGAAAAAGAGAAGAAGGTAAATTGGCATCTTCTGAGACCAGCAGCAGCAA
CAGGAATCATGGAAAAAATGAATTAGAAACAGTCGTGAGGATGGCTAGGC
AAGGGTAAAATTCAATAACTTGCTGAAGACATGCGAAATGTGAATATATG
CATGAGAAGCACAGCCAACTTGCCACTTAAAAATGCGTCAGAGACGTTTC
TTGTCCCTTCATTCCTACGTGACTGCACAGGGTGTCCACCTCGCTTTATT
GCATTGGCTCGTTATTTCAAGCACTATTCACACCTAAGGCTTATCACGGT
CTTCATGCTTTTACAATCGACAAGCCCTTTCCGGCCCCACCTCAAACTGC
AACTCAAACGGCAACACATTTGCTGGACATACCCAGCAACGCCAAGCACA
TAAAAAGTAAAAGTTAGAAAGAGGGCCAGCATCAG
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protein sequence of jgi.p|Nanoce1779_2|596200

>mRNA_6748-protein ID=mRNA_6748-protein|Name=jgi.p|Nanoce1779_2|596200|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MSDPSQKPPVAGVGAAAGARGGGSGGALLRYGGGVGARGGRVYSAGRSWT
TTPSSLPPSTNPLHAYAVPNPHYHSYRGGDGGRGPWTPRGGGRQLSTYHQ
NNQLYYPPSPSPMARPHRNKSLIITYPAPAMALPVAPALPLTTGNLLNAD
TKMLPAEEKETRAAATAASATSKDICDDDVQVDREILEMMATYRNALGSM
GRGAFTSHPLFFQSSNGNNLSPSSFSTRKRSLEEAARGGHEEKKRRR*
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mRNA from alignment at scaffold_17:1811..3229+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6748 ID=mRNA_6748|Name=jgi.p|Nanoce1779_2|596200|organism=Nannochloropsis oceanica|type=mRNA|length=1419bp|location=Sequence derived from alignment at scaffold_17:1811..3229+ (Nannochloropsis oceanica)
AGACATGCAGTGACCGCGGCATAATAGTGTGGTGGTGGTGACCTCTGCGC
AGATGGACGATTCATGAAAGTCTCCTAGAGCCAACTCCAAGCATTACGCC
CCACCCCTCGCCTTATCGCCCGCGCCATGTCCGACCCCTCCCAAAAGCCG
CCCGTAGCAGGAGTAGGAGCAGCAGCGGGAGCACGCGGAGGAGGAAGTGG
CGGAGCACTCCTGAGATACGGAGGTGGCGTTGGTGCACGTGGAGGGAGGG
TGTACAGTGCAGGAAGGTCATGGACGACAACACCCTCATCTCTTCCACCA
TCAACCAACCCTTTGCATGCATACGCGGTCCCTAACCCCCATTATCATTC
CTACCGAGGCGGTGATGGAGGCCGTGGTCCCTGGACACCTCGTGGGGGAG
GACGACAGCTTTCTACGTACCACCAAAACAACCAATTATACTACCCTCCT
TCACCATCTCCCATGGCCCGTCCACACCGAAATAAGTCCTTGATTATCAC
TTATCCTGCCCCTGCCATGGCTCTCCCTGTTGCGCCTGCGCTTCCATTAA
CAACTGGAAATTTGCTCAATGCTGACACAAAAATGCTGCCTGCAGAGGAG
AAGGAGACAAGGGCAGCAGCAACAGCAGCTTCAGCAACAAGCAAGGACAT
ATGTGACGACGACGTCCAAGTGGACAGAGAGATCCTTGAGATGATGGGTA
AATATGTTGGCGGGGTATGTTCGTCAAATGTCATATACTGCAGAGACAAT
TTCTCTGCCTCCGAATCCTTATTTTCCTCCCCTCACCCCTTCTTCCTCCC
TCCACTTATTATTATAATAACAACTTAATAGCAACTTACAGGAACGCCTT
AGGAAGCATGGGCAGGGGAGCGTTCACTTCCCATCCTCTCTTCTTTCAAT
CATCCAATGGAAATAATCTCTCTCCTTCTTCTTTCTCCACGCGGAAGCGC
TCCCTGGAGGAAGCAGCTCGAGGAGGACACGAGGAGAAAAAGAGAAGAAG
GTAAATTGGCATCTTCTGAGACCAGCAGCAGCAACAGGAATCATGGAAAA
AATGAATTAGAAACAGTCGTGAGGATGGCTAGGCAAGGGTAAAATTCAAT
AACTTGCTGAAGACATGCGAAATGTGAATATATGCATGAGAAGCACAGCC
AACTTGCCACTTAAAAATGCGTCAGAGACGTTTCTTGTCCCTTCATTCCT
ACGTGACTGCACAGGGTGTCCACCTCGCTTTATTGCATTGGCTCGTTATT
TCAAGCACTATTCACACCTAAGGCTTATCACGGTCTTCATGCTTTTACAA
TCGACAAGCCCTTTCCGGCCCCACCTCAAACTGCAACTCAAACGGCAACA
CATTTGCTGGACATACCCAGCAACGCCAAGCACATAAAAAGTAAAAGTTA
GAAAGAGGGCCAGCATCAG
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Coding sequence (CDS) from alignment at scaffold_17:1811..3229+

>mRNA_6748 ID=mRNA_6748|Name=jgi.p|Nanoce1779_2|596200|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at scaffold_17:1811..3229+ (Nannochloropsis oceanica)
ATGTCCGACCCCTCCCAAAAGCCGCCCGTAGCAGGAGTAGGAGCAGCAGC
GGGAGCACGCGGAGGAGGAAGTGGCGGAGCACTCCTGAGATACGGAGGTG
GCGTTGGTGCACGTGGAGGGAGGGTGTACAGTGCAGGAAGGTCATGGACG
ACAACACCCTCATCTCTTCCACCATCAACCAACCCTTTGCATGCATACGC
GGTCCCTAACCCCCATTATCATTCCTACCGAGGCGGTGATGGAGGCCGTG
GTCCCTGGACACCTCGTGGGGGAGGACGACAGCTTTCTACGTACCACCAA
AACAACCAATTATACTACCCTCCTTCACCATCTCCCATGGCCCGTCCACA
CCGAAATAAGTCCTTGATTATCACTTATCCTGCCCCTGCCATGGCTCTCC
CTGTTGCGCCTGCGCTTCCATTAACAACTGGAAATTTGCTCAATGCTGAC
ACAAAAATGCTGCCTGCAGAGGAGAAGGAGACAAGGGCAGCAGCAACAGC
AGCTTCAGCAACAAGCAAGGACATATGTGACGACGACGTCCAAGTGGACA
GAGAGATCCTTGAGATGATGGCAACTTACAGGAACGCCTTAGGAAGCATG
GGCAGGGGAGCGTTCACTTCCCATCCTCTCTTCTTTCAATCATCCAATGG
AAATAATCTCTCTCCTTCTTCTTTCTCCACGCGGAAGCGCTCCCTGGAGG
AAGCAGCTCGAGGAGGACACGAGGAGAAAAAGAGAAGAAGGTAAATGTCC
GACCCCTCCCAAAAGCCGCCCGTAGCAGGAGTAGGAGCAGCAGCGGGAGC
ACGCGGAGGAGGAAGTGGCGGAGCACTCCTGAGATACGGAGGTGGCGTTG
GTGCACGTGGAGGGAGGGTGTACAGTGCAGGAAGGTCATGGACGACAACA
CCCTCATCTCTTCCACCATCAACCAACCCTTTGCATGCATACGCGGTCCC
TAACCCCCATTATCATTCCTACCGAGGCGGTGATGGAGGCCGTGGTCCCT
GGACACCTCGTGGGGGAGGACGACAGCTTTCTACGTACCACCAAAACAAC
CAATTATACTACCCTCCTTCACCATCTCCCATGGCCCGTCCACACCGAAA
TAAGTCCTTGATTATCACTTATCCTGCCCCTGCCATGGCTCTCCCTGTTG
CGCCTGCGCTTCCATTAACAACTGGAAATTTGCTCAATGCTGACACAAAA
ATGCTGCCTGCAGAGGAGAAGGAGACAAGGGCAGCAGCAACAGCAGCTTC
AGCAACAAGCAAGGACATATGTGACGACGACGTCCAAGTGGACAGAGAGA
TCCTTGAGATGATGGCAACTTACAGGAACGCCTTAGGAAGCATGGGCAGG
GGAGCGTTCACTTCCCATCCTCTCTTCTTTCAATCATCCAATGGAAATAA
TCTCTCTCCTTCTTCTTTCTCCACGCGGAAGCGCTCCCTGGAGGAAGCAG
CTCGAGGAGGACACGAGGAGAAAAAGAGAAGAAGGTAA
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Synonyms
Publications