jgi.p|Nanoce1779_2|672206, mRNA_6747 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|672206
Unique Name	mRNA_6747
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1728
Alignment location	scaffold_17:11..1738 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	672292
Track	FilteredModels2
ProteinId	672206

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:11..1738 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672206	gene_6747	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672206	mRNA_6747-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6747	CDS_6747	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:11..1738-
coding sequence from alignment at scaffold_17:11..1738-

mRNA sequence

>mRNA_6747 ID=mRNA_6747|Name=jgi.p|Nanoce1779_2|672206|organism=Nannochloropsis oceanica|type=mRNA|length=1728bp
CCCCTCGCCTTTTTTGACCTCCTCGAATTTGGGCGATGCATTTACTGTGA
GAGTAAGTTGTCCTACCAGATACACAACGCGAACATCCACCCACCGAGCC
AAACAGCTACTGCAGGCACGAGCGCGGCTATCATGGATCGCGCGAGCTAG
GCTTCAAGCTTTTTTAACTCCACCCCGACCCATCATGCCTGCCCTCCTAA
GCCGCCTTGCCCTCCTTCCCCTTCTCCTGCTCCTGTTCCTGCATTCCGCC
TCCGCCCAGCCCACCTCCCTGTGGGCGACCATCAGCCAAAATACCTCCTT
CTCCGTCCTGAGCAATTGTATTCGTCAGGCAGACCCCGCCGTTTTGGCCA
TTCTAAACGACACGGGAGGCTCCCAGCTTTACACACTCTTTGCCCCTGTT
GACAGCGCCTTCGCTGCTGCTGGCACCGACGCCACCGTTTGCCCCGACGG
AGACCGGCATGCAGCCACGGCGGTCCTTAGCTATTTGATATCTAGCCAGA
CGACGCCCTTGCCATACCTGAACCAGCCCTTCGCCTTGCCGCTCGAGCGA
AATGTGCCGGACGCTGTTGCCGCGTTGTACGTCTACAGCGTCAGCAAAGA
CGCTGCCACCTCCCCCGCCTTGCCCTCGATCCTCTACGTCAATAACGCCC
AAGCCCTGAGCTGGGAAGCAGTACCCACGTCACAGGGTGGAAACCATTAC
TTAGTGCCCTTGGCTAGCCCTCTGATCCCTCCCCCGGGGAACGGCAGCCT
GTGGGATGTGTTACAAGCTCAGCCAGACTTTAGCACCACCGTCGCGCTTA
TCGCCGCACAGCTCCCCGACTTCCAAGCCCTGCTTCAAGCGAGTCCTGAC
GTGGCTTCCCATAAGGGGTATCACACTTTCTTCGTGCCCAACAACGAGGC
ATGGGCCGCGCTTCCTCCCGACCGCCTGACACGGCTGCAGTCCGACGACC
AAGCCCTCGAAACCCTCCTCCTCTTCCACACCCTCTCCAATAACAACCCC
AGCAGTGATTACCCTCGTTCCACCACCGGCATGTACTACTCTCAGCAATT
TTACCCTACCTCTAGCCTACGTGCGCGTGACATCTATCAAGCCTTTTACA
GCGCCCTCTCCTCCTTCACGGGTCTCCGCCTCCCCAACGACCTCGGTATC
CTCCTAGATATCTCTCGGCTTAGTGGGACCCTCCACCTGCAAAGCAACAG
CACTGCCGTCCTTCTCCCCGATCTTTCCGCCTACAACGGTGTCGTGCACG
GCCTCTCTGGAGTCCTCCCCCTCCCCGAAGACATTCCCGCCGTCCTCGCC
TCCCCCCCTCCCTCCCTCGCCGCTGCCGGGAACTTCTCCATCCTCTCTCA
ATTAATGCAAGCAGCGGTCTCATCAGGCACTGCTCCAGAACTTGCGAGTG
GCGGTCCCTTCACTTATCTGGCACCAACAGATGCTGCTTTTGCTGCTGCC
TTTGAGGAAGGACGATTACCCAGGTTGCCTGTGTTGCTGCAGGATCTGGA
AAGAGTGGTCTCGCTGTGTAGGTACTGGGCGATGAATTCGACGGAGGGGC
TATTGTTATTTTCTCCTGACCCGTACATGGATCCGTTTAGGGATGATTTT
GTGGACGGTGCGAAGTTGGAGGATGGGGAGGGGAGGGGTGTGTGGGTGAA
GAGGCTGGTGGTGGAGGGGAGTACGAGCCTGGAAGGGAAGGTTGATGACG
TAGTGGTGTTTTTGAACAATGCGCGGCT

protein sequence of jgi.p|Nanoce1779_2|672206

>mRNA_6747-protein ID=mRNA_6747-protein|Name=jgi.p|Nanoce1779_2|672206|organism=Nannochloropsis oceanica|type=polypeptide|length=514bp
MPALLSRLALLPLLLLLFLHSASAQPTSLWATISQNTSFSVLSNCIRQAD
PAVLAILNDTGGSQLYTLFAPVDSAFAAAGTDATVCPDGDRHAATAVLSY
LISSQTTPLPYLNQPFALPLERNVPDAVAALYVYSVSKDAATSPALPSIL
YVNNAQALSWEAVPTSQGGNHYLVPLASPLIPPPGNGSLWDVLQAQPDFS
TTVALIAAQLPDFQALLQASPDVASHKGYHTFFVPNNEAWAALPPDRLTR
LQSDDQALETLLLFHTLSNNNPSSDYPRSTTGMYYSQQFYPTSSLRARDI
YQAFYSALSSFTGLRLPNDLGILLDISRLSGTLHLQSNSTAVLLPDLSAY
NGVVHGLSGVLPLPEDIPAVLASPPPSLAAAGNFSILSQLMQAAVSSGTA
PELASGGPFTYLAPTDAAFAAAFEEGRLPRLPVLLQDLERVVSLCRYWAM
NSTEGLLLFSPDPYMDPFRDDFVDGAKLEDGEGRGVWVKRLVVEGSTSLE
GKVDDVVVFLNNAR

mRNA from alignment at scaffold_17:11..1738-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6747 ID=mRNA_6747|Name=jgi.p|Nanoce1779_2|672206|organism=Nannochloropsis oceanica|type=mRNA|length=1728bp|location=Sequence derived from alignment at scaffold_17:11..1738- (Nannochloropsis oceanica)
CCCCTCGCCTTTTTTGACCTCCTCGAATTTGGGCGATGCATTTACTGTGA
GAGTAAGTTGTCCTACCAGATACACAACGCGAACATCCACCCACCGAGCC
AAACAGCTACTGCAGGCACGAGCGCGGCTATCATGGATCGCGCGAGCTAG
GCTTCAAGCTTTTTTAACTCCACCCCGACCCATCATGCCTGCCCTCCTAA
GCCGCCTTGCCCTCCTTCCCCTTCTCCTGCTCCTGTTCCTGCATTCCGCC
TCCGCCCAGCCCACCTCCCTGTGGGCGACCATCAGCCAAAATACCTCCTT
CTCCGTCCTGAGCAATTGTATTCGTCAGGCAGACCCCGCCGTTTTGGCCA
TTCTAAACGACACGGGAGGCTCCCAGCTTTACACACTCTTTGCCCCTGTT
GACAGCGCCTTCGCTGCTGCTGGCACCGACGCCACCGTTTGCCCCGACGG
AGACCGGCATGCAGCCACGGCGGTCCTTAGCTATTTGATATCTAGCCAGA
CGACGCCCTTGCCATACCTGAACCAGCCCTTCGCCTTGCCGCTCGAGCGA
AATGTGCCGGACGCTGTTGCCGCGTTGTACGTCTACAGCGTCAGCAAAGA
CGCTGCCACCTCCCCCGCCTTGCCCTCGATCCTCTACGTCAATAACGCCC
AAGCCCTGAGCTGGGAAGCAGTACCCACGTCACAGGGTGGAAACCATTAC
TTAGTGCCCTTGGCTAGCCCTCTGATCCCTCCCCCGGGGAACGGCAGCCT
GTGGGATGTGTTACAAGCTCAGCCAGACTTTAGCACCACCGTCGCGCTTA
TCGCCGCACAGCTCCCCGACTTCCAAGCCCTGCTTCAAGCGAGTCCTGAC
GTGGCTTCCCATAAGGGGTATCACACTTTCTTCGTGCCCAACAACGAGGC
ATGGGCCGCGCTTCCTCCCGACCGCCTGACACGGCTGCAGTCCGACGACC
AAGCCCTCGAAACCCTCCTCCTCTTCCACACCCTCTCCAATAACAACCCC
AGCAGTGATTACCCTCGTTCCACCACCGGCATGTACTACTCTCAGCAATT
TTACCCTACCTCTAGCCTACGTGCGCGTGACATCTATCAAGCCTTTTACA
GCGCCCTCTCCTCCTTCACGGGTCTCCGCCTCCCCAACGACCTCGGTATC
CTCCTAGATATCTCTCGGCTTAGTGGGACCCTCCACCTGCAAAGCAACAG
CACTGCCGTCCTTCTCCCCGATCTTTCCGCCTACAACGGTGTCGTGCACG
GCCTCTCTGGAGTCCTCCCCCTCCCCGAAGACATTCCCGCCGTCCTCGCC
TCCCCCCCTCCCTCCCTCGCCGCTGCCGGGAACTTCTCCATCCTCTCTCA
ATTAATGCAAGCAGCGGTCTCATCAGGCACTGCTCCAGAACTTGCGAGTG
GCGGTCCCTTCACTTATCTGGCACCAACAGATGCTGCTTTTGCTGCTGCC
TTTGAGGAAGGACGATTACCCAGGTTGCCTGTGTTGCTGCAGGATCTGGA
AAGAGTGGTCTCGCTGTGTAGGTACTGGGCGATGAATTCGACGGAGGGGC
TATTGTTATTTTCTCCTGACCCGTACATGGATCCGTTTAGGGATGATTTT
GTGGACGGTGCGAAGTTGGAGGATGGGGAGGGGAGGGGTGTGTGGGTGAA
GAGGCTGGTGGTGGAGGGGAGTACGAGCCTGGAAGGGAAGGTTGATGACG
TAGTGGTGTTTTTGAACAATGCGCGGCT

Coding sequence (CDS) from alignment at scaffold_17:11..1738-

>mRNA_6747 ID=mRNA_6747|Name=jgi.p|Nanoce1779_2|672206|organism=Nannochloropsis oceanica|type=CDS|length=1542bp|location=Sequence derived from alignment at scaffold_17:11..1738- (Nannochloropsis oceanica)
ATGCCTGCCCTCCTAAGCCGCCTTGCCCTCCTTCCCCTTCTCCTGCTCCT
GTTCCTGCATTCCGCCTCCGCCCAGCCCACCTCCCTGTGGGCGACCATCA
GCCAAAATACCTCCTTCTCCGTCCTGAGCAATTGTATTCGTCAGGCAGAC
CCCGCCGTTTTGGCCATTCTAAACGACACGGGAGGCTCCCAGCTTTACAC
ACTCTTTGCCCCTGTTGACAGCGCCTTCGCTGCTGCTGGCACCGACGCCA
CCGTTTGCCCCGACGGAGACCGGCATGCAGCCACGGCGGTCCTTAGCTAT
TTGATATCTAGCCAGACGACGCCCTTGCCATACCTGAACCAGCCCTTCGC
CTTGCCGCTCGAGCGAAATGTGCCGGACGCTGTTGCCGCGTTGTACGTCT
ACAGCGTCAGCAAAGACGCTGCCACCTCCCCCGCCTTGCCCTCGATCCTC
TACGTCAATAACGCCCAAGCCCTGAGCTGGGAAGCAGTACCCACGTCACA
GGGTGGAAACCATTACTTAGTGCCCTTGGCTAGCCCTCTGATCCCTCCCC
CGGGGAACGGCAGCCTGTGGGATGTGTTACAAGCTCAGCCAGACTTTAGC
ACCACCGTCGCGCTTATCGCCGCACAGCTCCCCGACTTCCAAGCCCTGCT
TCAAGCGAGTCCTGACGTGGCTTCCCATAAGGGGTATCACACTTTCTTCG
TGCCCAACAACGAGGCATGGGCCGCGCTTCCTCCCGACCGCCTGACACGG
CTGCAGTCCGACGACCAAGCCCTCGAAACCCTCCTCCTCTTCCACACCCT
CTCCAATAACAACCCCAGCAGTGATTACCCTCGTTCCACCACCGGCATGT
ACTACTCTCAGCAATTTTACCCTACCTCTAGCCTACGTGCGCGTGACATC
TATCAAGCCTTTTACAGCGCCCTCTCCTCCTTCACGGGTCTCCGCCTCCC
CAACGACCTCGGTATCCTCCTAGATATCTCTCGGCTTAGTGGGACCCTCC
ACCTGCAAAGCAACAGCACTGCCGTCCTTCTCCCCGATCTTTCCGCCTAC
AACGGTGTCGTGCACGGCCTCTCTGGAGTCCTCCCCCTCCCCGAAGACAT
TCCCGCCGTCCTCGCCTCCCCCCCTCCCTCCCTCGCCGCTGCCGGGAACT
TCTCCATCCTCTCTCAATTAATGCAAGCAGCGGTCTCATCAGGCACTGCT
CCAGAACTTGCGAGTGGCGGTCCCTTCACTTATCTGGCACCAACAGATGC
TGCTTTTGCTGCTGCCTTTGAGGAAGGACGATTACCCAGGTTGCCTGTGT
TGCTGCAGGATCTGGAAAGAGTGGTCTCGCTGTGTAGGTACTGGGCGATG
AATTCGACGGAGGGGCTATTGTTATTTTCTCCTGACCCGTACATGGATCC
GTTTAGGGATGATTTTGTGGACGGTGCGAAGTTGGAGGATGGGGAGGGGA
GGGGTGTGTGGGTGAAGAGGCTGGTGGTGGAGGGGAGTACGAGCCTGGAA
GGGAAGGTTGATGACGTAGTGGTGTTTTTGAACAATGCGCGG

Synonyms

Publications