jgi.p|Nanoce1779_2|531032, mRNA_6744 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|531032
Unique Name	mRNA_6744
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1296
Alignment location	scaffold_18:603461..605076 -

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Properties


Property Name	Value
TranscriptId	531118
Track	FilteredModels2
ProteinId	531032

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:603461..605076 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|531032	gene_6744	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|531032	mRNA_6744-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6744	CDS_6744	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:603461..605076-
coding sequence from alignment at scaffold_18:603461..605076-

mRNA sequence

>mRNA_6744 ID=mRNA_6744|Name=jgi.p|Nanoce1779_2|531032|organism=Nannochloropsis oceanica|type=mRNA|length=1296bp
ATGTTCAAGGCCGCCTCCGCGGGCTCTCTGACCACGGCCACCTCCGCCGT
GACGGCTGCCCCGGTCTGTCCTTCCAACCGACAAGGCGTTGTGACCATGG
CTAAGAAGAGCGTGTCCTCCCTGAGCGACGCGGAGCTCAAGGGCAAGCGT
GTGTTTGTGCGTTGCGACTTGAACGTGCCCCTTGACGGAAAGAAGATCAC
GGACGACACCCGTATCCGTGCGTCGGTGCCCACCATCGAGTACCTGGCCT
CCAAGGGCGCCAAGGTCCTCCTCACCTCCCACTTGGGCCGACCCAAGGGC
AAGGAGGACAAATACTCCCTGGCCCCCGTGGCTGATCGCCTGACCGAGCT
CTTGGGCAAGAAGGTGACTTTCGTCCCGGACTGCATCGGCGAGACTGTCA
CCAGCGCCGTCGCTGGCCTTGCGGAAGGAGATGTCGCTCTCCTGGAGAAC
GTCCGCTTCTACCCCGAGGAGGAGAAGAATGTGCCTGCCTTCGCTGAGAA
GCTGGCTGCCAACGCTGACTTGTACGTGAACGATGCCTTCGGCACGGCCC
ACCGCGCTCACGGCTCCACTGAGGGTGTCTCCAAGTTCCTCAAGCCCGCT
GTCGCCGGTTTCCTTCTCCAGAAGGAGCTCGACTACCTTGACGGCGCCGT
CTCCCAGCCCAAGCGCCCCTTCGCCGCCATCGTTGGCGGGTCTAAGGTCT
CCACCAAGATCACTGTGATTGAGACGCTCATCAACAAGGTCGACAAGATC
GTCATCGGCGGCGGCATGGTCTTTACCTTCCTGAAGGCCCGTGGACACAA
CGTCGGCGGCTCCCTCGTCGAGGAGGACAAGCTCGACTTGGCCCGTGAGT
TGGAGGCCCTCGCCGCGAAGAAAGGCGTCAAATTTATCCTGCCCACGGAC
GTGGTCATCGCCGACAAATTTGCTCCGGACGCCAACAGCAAGGTGGTGGC
TGCCACTGCCATCCCGGAGGGGTGGATGGGCCTTGACAACGGCCCCGAGT
CGACCAAGATGATCCAGGCGGAGCTCGCGGACTGCAAGACCATCATCTGG
AACGGTCCCATGGGCGTGTTTGAGTTCGACAAATTCGCCGCAGGCACCAG
CGCGATCGCCCAGACTATGGCGGAGCTCACTGCCAAGGGCGCTACCACCA
TCGTCGGCGGCGGTGACTCGGTGGCTGCTGTCGAGAAGGCCGGCCTGGCC
GACAAGCTCTCCCACGTCTCCACCGGCGGGGGTGCTTCCTTGGAGCTGCT
CGAGGGCAAGGTGCTCCCCGGTGTGGCGGCCCTCAACGAGTCTTAA

protein sequence of jgi.p|Nanoce1779_2|531032

>mRNA_6744-protein ID=mRNA_6744-protein|Name=jgi.p|Nanoce1779_2|531032|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MFKAASAGSLTTATSAVTAAPVCPSNRQGVVTMAKKSVSSLSDAELKGKR
VFVRCDLNVPLDGKKITDDTRIRASVPTIEYLASKGAKVLLTSHLGRPKG
KEDKYSLAPVADRLTELLGKKVTFVPDCIGETVTSAVAGLAEGDVALLEN
VRFYPEEEKNVPAFAEKLAANADLYVNDAFGTAHRAHGSTEGVSKFLKPA
VAGFLLQKELDYLDGAVSQPKRPFAAIVGGSKVSTKITVIETLINKVDKI
VIGGGMVFTFLKARGHNVGGSLVEEDKLDLARELEALAAKKGVKFILPTD
VVIADKFAPDANSKVVAATAIPEGWMGLDNGPESTKMIQAELADCKTIIW
NGPMGVFEFDKFAAGTSAIAQTMAELTAKGATTIVGGGDSVAAVEKAGLA
DKLSHVSTGGGASLELLEGKVLPGVAALNES*

mRNA from alignment at scaffold_18:603461..605076-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6744 ID=mRNA_6744|Name=jgi.p|Nanoce1779_2|531032|organism=Nannochloropsis oceanica|type=mRNA|length=1616bp|location=Sequence derived from alignment at scaffold_18:603461..605076- (Nannochloropsis oceanica)
ATGTTCAAGGCCGCCTCCGCGGGCTCTCTGACCACGGCCACCTCCGCCGT
GACGGCTGCCCCGGTCTGTCCTTCCAACCGACAAGGCGTTGTGACCATGG
CTAAGAAGAGCGTGTCCTCCCTGAGCGACGCGGAGCTCAAGGGCAAGCGT
GTGTTTGTGCGTTGCGACTTGAACGTGCCCCTTGACGGAAAGAAGATCAC
GGACGACACCCGTATCCGTGCGTCGGTGCCCACCATCGAGTACCTGGCCT
CCAAGGGCGCCAAGGTCCTCCTCACCTCCCACTTGGGCCGACCCAAGGGC
AAGGAGGACAAATACTCCCTGGCCCCCGTGGCTGATCGCCTGACCGAGCT
CTTGGGCAAGAAGGTGACTTTCGTCCCGGACTGCATCGGCGAGACTGTCA
CCAGCGCCGTCGCTGGCCTTGCGGAAGGAGATGTCGCTCTCCTGGAGAAC
GTCCGCTTCTACCCCGAGGAGGAGAAGAATGTGCCTGCCTTCGCTGAGAA
GCTGGCTGCCAACGCTGACTTGTACGTGAACGATGCCTTCGGCACGGCCC
ACCGCGCTCACGGCTCCACTGAGGGTGTCTCCAAGTTCCTCAAGCCCGCT
GTCGCCGGTTTCCTTCTCCAGAAGGAGCTCGACTACCTTGACGGCGCCGT
CTCCCAGCCCAAGCGCCCCTTCGCCGCCATCGTTGGCGGGTCTAAGGTAT
GATCTCGAGGGTGGGAAAGAGGGAGGATCGATGGTGGTGCCCCATGGGGG
CGTTGTCTGTCGGTCAGCCCTTACCCTCACTCTCACGCTTCCTCCCTCTC
TCGTTTACTCTCTTGCCCGTTTCTTTTCCTTTCATCCAGGTCTCCACCAA
GATCACTGTGATTGAGACGCTCATCAACAAGGTCGACAAGATCGTCATCG
GCGGCGGCATGGTCTTTACCTTCCTGAAGGCCCGTGGACACAACGTGAGT
CCCCCTCATGCCCTCCCTCTCTCCCTCCCTCTCTCACTTCCTCCTTTCTT
CCCTATCAAACTTTTTTGACCCTCCATACACCTACCTGCCCACTACCACA
CCCACAATCTTTGCCTTGAAACCTTCCCCCCTCCTCCTTCCCCCCCTCCT
CCTTCCCCCCCTCCTCCTCAGGTCGGCGGCTCCCTCGTCGAGGAGGACAA
GCTCGACTTGGCCCGTGAGTTGGAGGCCCTCGCCGCGAAGAAAGGCGTCA
AATTTATCCTGCCCACGGACGTGGTCATCGCCGACAAATTTGCTCCGGAC
GCCAACAGCAAGGTGGTGGCTGCCACTGCCATCCCGGAGGGGTGGATGGG
CCTTGACAACGGCCCCGAGTCGACCAAGATGATCCAGGCGGAGCTCGCGG
ACTGCAAGACCATCATCTGGAACGGTCCCATGGGCGTGTTTGAGTTCGAC
AAATTCGCCGCAGGCACCAGCGCGATCGCCCAGACTATGGCGGAGCTCAC
TGCCAAGGGCGCTACCACCATCGTCGGCGGCGGTGACTCGGTGGCTGCTG
TCGAGAAGGCCGGCCTGGCCGACAAGCTCTCCCACGTCTCCACCGGCGGG
GGTGCTTCCTTGGAGCTGCTCGAGGGCAAGGTGCTCCCCGGTGTGGCGGC
CCTCAACGAGTCTTAA

Coding sequence (CDS) from alignment at scaffold_18:603461..605076-

>mRNA_6744 ID=mRNA_6744|Name=jgi.p|Nanoce1779_2|531032|organism=Nannochloropsis oceanica|type=CDS|length=3888bp|location=Sequence derived from alignment at scaffold_18:603461..605076- (Nannochloropsis oceanica)
GTCGGCGGCTCCCTCGTCGAGGAGGACAAGCTCGACTTGGCCCGTGAGTT
GGAGGCCCTCGCCGCGAAGAAAGGCGTCAAATTTATCCTGCCCACGGACG
TGGTCATCGCCGACAAATTTGCTCCGGACGCCAACAGCAAGGTGGTGGCT
GCCACTGCCATCCCGGAGGGGTGGATGGGCCTTGACAACGGCCCCGAGTC
GACCAAGATGATCCAGGCGGAGCTCGCGGACTGCAAGACCATCATCTGGA
ACGGTCCCATGGGCGTGTTTGAGTTCGACAAATTCGCCGCAGGCACCAGC
GCGATCGCCCAGACTATGGCGGAGCTCACTGCCAAGGGCGCTACCACCAT
CGTCGGCGGCGGTGACTCGGTGGCTGCTGTCGAGAAGGCCGGCCTGGCCG
ACAAGCTCTCCCACGTCTCCACCGGCGGGGGTGCTTCCTTGGAGCTGCTC
GAGGGCAAGGTGCTCCCCGGTGTGGCGGCCCTCAACGAGTCTTAAGTCTC
CACCAAGATCACTGTGATTGAGACGCTCATCAACAAGGTCGACAAGATCG
TCATCGGCGGCGGCATGGTCTTTACCTTCCTGAAGGCCCGTGGACACAAC
ATGTTCAAGGCCGCCTCCGCGGGCTCTCTGACCACGGCCACCTCCGCCGT
GACGGCTGCCCCGGTCTGTCCTTCCAACCGACAAGGCGTTGTGACCATGG
CTAAGAAGAGCGTGTCCTCCCTGAGCGACGCGGAGCTCAAGGGCAAGCGT
GTGTTTGTGCGTTGCGACTTGAACGTGCCCCTTGACGGAAAGAAGATCAC
GGACGACACCCGTATCCGTGCGTCGGTGCCCACCATCGAGTACCTGGCCT
CCAAGGGCGCCAAGGTCCTCCTCACCTCCCACTTGGGCCGACCCAAGGGC
AAGGAGGACAAATACTCCCTGGCCCCCGTGGCTGATCGCCTGACCGAGCT
CTTGGGCAAGAAGGTGACTTTCGTCCCGGACTGCATCGGCGAGACTGTCA
CCAGCGCCGTCGCTGGCCTTGCGGAAGGAGATGTCGCTCTCCTGGAGAAC
GTCCGCTTCTACCCCGAGGAGGAGAAGAATGTGCCTGCCTTCGCTGAGAA
GCTGGCTGCCAACGCTGACTTGTACGTGAACGATGCCTTCGGCACGGCCC
ACCGCGCTCACGGCTCCACTGAGGGTGTCTCCAAGTTCCTCAAGCCCGCT
GTCGCCGGTTTCCTTCTCCAGAAGGAGCTCGACTACCTTGACGGCGCCGT
CTCCCAGCCCAAGCGCCCCTTCGCCGCCATCGTTGGCGGGTCTAAGGTCG
GCGGCTCCCTCGTCGAGGAGGACAAGCTCGACTTGGCCCGTGAGTTGGAG
GCCCTCGCCGCGAAGAAAGGCGTCAAATTTATCCTGCCCACGGACGTGGT
CATCGCCGACAAATTTGCTCCGGACGCCAACAGCAAGGTGGTGGCTGCCA
CTGCCATCCCGGAGGGGTGGATGGGCCTTGACAACGGCCCCGAGTCGACC
AAGATGATCCAGGCGGAGCTCGCGGACTGCAAGACCATCATCTGGAACGG
TCCCATGGGCGTGTTTGAGTTCGACAAATTCGCCGCAGGCACCAGCGCGA
TCGCCCAGACTATGGCGGAGCTCACTGCCAAGGGCGCTACCACCATCGTC
GGCGGCGGTGACTCGGTGGCTGCTGTCGAGAAGGCCGGCCTGGCCGACAA
GCTCTCCCACGTCTCCACCGGCGGGGGTGCTTCCTTGGAGCTGCTCGAGG
GCAAGGTGCTCCCCGGTGTGGCGGCCCTCAACGAGTCTTAAGTCTCCACC
AAGATCACTGTGATTGAGACGCTCATCAACAAGGTCGACAAGATCGTCAT
CGGCGGCGGCATGGTCTTTACCTTCCTGAAGGCCCGTGGACACAACATGT
TCAAGGCCGCCTCCGCGGGCTCTCTGACCACGGCCACCTCCGCCGTGACG
GCTGCCCCGGTCTGTCCTTCCAACCGACAAGGCGTTGTGACCATGGCTAA
GAAGAGCGTGTCCTCCCTGAGCGACGCGGAGCTCAAGGGCAAGCGTGTGT
TTGTGCGTTGCGACTTGAACGTGCCCCTTGACGGAAAGAAGATCACGGAC
GACACCCGTATCCGTGCGTCGGTGCCCACCATCGAGTACCTGGCCTCCAA
GGGCGCCAAGGTCCTCCTCACCTCCCACTTGGGCCGACCCAAGGGCAAGG
AGGACAAATACTCCCTGGCCCCCGTGGCTGATCGCCTGACCGAGCTCTTG
GGCAAGAAGGTGACTTTCGTCCCGGACTGCATCGGCGAGACTGTCACCAG
CGCCGTCGCTGGCCTTGCGGAAGGAGATGTCGCTCTCCTGGAGAACGTCC
GCTTCTACCCCGAGGAGGAGAAGAATGTGCCTGCCTTCGCTGAGAAGCTG
GCTGCCAACGCTGACTTGTACGTGAACGATGCCTTCGGCACGGCCCACCG
CGCTCACGGCTCCACTGAGGGTGTCTCCAAGTTCCTCAAGCCCGCTGTCG
CCGGTTTCCTTCTCCAGAAGGAGCTCGACTACCTTGACGGCGCCGTCTCC
CAGCCCAAGCGCCCCTTCGCCGCCATCGTTGGCGGGTCTAAGGTCGGCGG
CTCCCTCGTCGAGGAGGACAAGCTCGACTTGGCCCGTGAGTTGGAGGCCC
TCGCCGCGAAGAAAGGCGTCAAATTTATCCTGCCCACGGACGTGGTCATC
GCCGACAAATTTGCTCCGGACGCCAACAGCAAGGTGGTGGCTGCCACTGC
CATCCCGGAGGGGTGGATGGGCCTTGACAACGGCCCCGAGTCGACCAAGA
TGATCCAGGCGGAGCTCGCGGACTGCAAGACCATCATCTGGAACGGTCCC
ATGGGCGTGTTTGAGTTCGACAAATTCGCCGCAGGCACCAGCGCGATCGC
CCAGACTATGGCGGAGCTCACTGCCAAGGGCGCTACCACCATCGTCGGCG
GCGGTGACTCGGTGGCTGCTGTCGAGAAGGCCGGCCTGGCCGACAAGCTC
TCCCACGTCTCCACCGGCGGGGGTGCTTCCTTGGAGCTGCTCGAGGGCAA
GGTGCTCCCCGGTGTGGCGGCCCTCAACGAGTCTTAAGTCTCCACCAAGA
TCACTGTGATTGAGACGCTCATCAACAAGGTCGACAAGATCGTCATCGGC
GGCGGCATGGTCTTTACCTTCCTGAAGGCCCGTGGACACAACATGTTCAA
GGCCGCCTCCGCGGGCTCTCTGACCACGGCCACCTCCGCCGTGACGGCTG
CCCCGGTCTGTCCTTCCAACCGACAAGGCGTTGTGACCATGGCTAAGAAG
AGCGTGTCCTCCCTGAGCGACGCGGAGCTCAAGGGCAAGCGTGTGTTTGT
GCGTTGCGACTTGAACGTGCCCCTTGACGGAAAGAAGATCACGGACGACA
CCCGTATCCGTGCGTCGGTGCCCACCATCGAGTACCTGGCCTCCAAGGGC
GCCAAGGTCCTCCTCACCTCCCACTTGGGCCGACCCAAGGGCAAGGAGGA
CAAATACTCCCTGGCCCCCGTGGCTGATCGCCTGACCGAGCTCTTGGGCA
AGAAGGTGACTTTCGTCCCGGACTGCATCGGCGAGACTGTCACCAGCGCC
GTCGCTGGCCTTGCGGAAGGAGATGTCGCTCTCCTGGAGAACGTCCGCTT
CTACCCCGAGGAGGAGAAGAATGTGCCTGCCTTCGCTGAGAAGCTGGCTG
CCAACGCTGACTTGTACGTGAACGATGCCTTCGGCACGGCCCACCGCGCT
CACGGCTCCACTGAGGGTGTCTCCAAGTTCCTCAAGCCCGCTGTCGCCGG
TTTCCTTCTCCAGAAGGAGCTCGACTACCTTGACGGCGCCGTCTCCCAGC
CCAAGCGCCCCTTCGCCGCCATCGTTGGCGGGTCTAAG

Synonyms

Publications