jgi.p|Nanoce1779_2|651819, mRNA_6743 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|651819
Unique NamemRNA_6743
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length3370
Alignment locationscaffold_18:600063..603432 +

Link to JBrowse

Properties
Property NameValue
TranscriptId651905
TrackFilteredModels2
ProteinId651819
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:600063..603432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651819gene_6743Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651819mRNA_6743-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6743CDS_6743Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6743 ID=mRNA_6743|Name=jgi.p|Nanoce1779_2|651819|organism=Nannochloropsis oceanica|type=mRNA|length=3370bp
ATGGAGGACGGCCCCCACCCTCCCTTTCACCTTCCTCCAATACCACTTCC
CTCACCGTCCTCCGGCCTTCCTTTCCTCATGAACCACACCTATCCTGTGC
CTGACTTATCTGATATGGTTATGGATGACATTTGGATGATGCAAGATCAA
GAGCAGCGGCAGCATCACCACCATCAGCAGCATGCCCCTAACCCCCCTCC
GAGCCCTGCAGCTGCCATAGGGGAAATTGGGGCTGGCGGTGGTGGCTTTG
ACACTTTTATGCTCGACCCCATGACGGGTCATTTTCAAATGCAGCAACAG
CTTCCGTCCTTGTCCCCGCTACCCTTGCCGTCTCACCACTACAGACATAC
CCGCAGTCAGCAAGACCTCCACCCTACCCGCCACCACAAGGGCCAGAGTG
ACAACGATGACGATGAGGAGGAAGAGGAAGAATTTTACGCCAGTGACAGC
GACTTTGTGATTGATGAGGATGATCTCTCAAGCCTGGATGAAGATCGGAG
CAATCATCAGGTGCGCACTCCCTACCTCCCCCCTTCAATCATGAACGGCA
TGGGCTCCCCTGACGGCATGAGCACCCACTCATCCTACCCGGATGGATCT
GTCCCCCATTGGGCTGCGGGCGATGGAACTGGCGGCGGATCAGGCCGAAG
CCATGGGCGTGGGGGTGCTCGTGGTAATGGCGGGCGTGGGCGACGTAAGG
GCTCCCTGGACGTGCAGCAGATGACGCGACGCTTGAAGCAGAAGGCGGAG
AGCTATGAGCGGAAGAAGAGTAGAGCCAAGGCCTGTCGCAAGGTGCTGAA
GGAGCGGTTCGACACGCTGCTCAAGGTATGCGGTGATCCCCACATTCGAC
GCTCGGACAAGGTCGGACTCTTGACGCGGGCGATTAATCTCATTACGACC
ATGCGGCAGCAGCTGGGCGGCGCTGGAGGAGCCTTTTTCGACGTGCAACG
GGCCCCAACGGCGTGGCGAGGCGGTGGGAACGGCCACCATTATCATCACC
ACAGTCAGGGCACACGACGTAGCAAGCGCACAATACGGGGCTCGGCGCTG
TCGGCGGCATCGACGAACAACGACGACAACAAAGAACGCGACGACAACGA
TGACGAAAACGGAGAGCGCCAACCGGGGAAGCGAGGATGTGTGAACCGTG
TGCACTCTCGAAAATCTCCGACTCGATGGATTCCTGTCAGTATGATCCAG
CACCAACAAAACTCCGATCCCACGACTCCGTCGCCTCAGACCTTCACCCC
TCCTTCGACGCCGACGACCTCCTTTCCAGCTAACTTGCCCTTGAAGGAAC
GCCTGGCCACACCCAAAGTGACGCACACGCTGCTGGCGTGCTTGGATTCT
GCTTTCCTCGAGCCCTGCCGAGATGTGGTACCCGATAAAAAAGAGCCAAC
GGCCTTGCAGGACGTGCCCTGGAAAGAAATATGCCGCATGCGCTGGAAGG
CGGAGGAAGCCGAATTCCACGAGGAGCTACACCCCACGACCACGATTGAC
TGGCGCCACGTGTATGTGCAGCAAGCCCGGGCCTTGCGGCTACCTCACTC
CCCAAACTTTTTGTCCATAGGCTCAGTAGTTTCGTCGGGGGAATCCGGGG
GCGTCTGCGGCTGGCTGCTGGCGCGCACCTCTTCCTACATCCCTTTGCCC
TCACCTGTGGGCAGCTCGAGTGCGCCGCAGGCCTTGCTCTCCTTTATCCT
GGTGATGCAAAATATCACGCACGACATGATCACTATCCCACACCAGCGTT
TTGAGGTGCATATCAAGAGACAGGTCCCGTCACAGCAGCAGAAGCAGAAG
CAAGGCCCGCGTGTCATTCCCACTCGCTCCATCTCCAACAGTTCCTCCAC
TACCACCTCCTCCATCGGCAGCACCAGCGACGGAGATGGCGAGGGGGAAG
AGCAGAAAGAACAGGCGAATATGCCGGTGATACTACAAGAGCCAACAGAA
ATGCAGCTAAAGGAGCAAGGGTTAGACCCCTCCCTGTATCAGGCTTCCCT
CATGTCATGCCAAGAGACGGATTTGAACGCGGACGGCAGCATTCCCTGGG
TGTGCTACGAGGGAGTTGGTGGCTTGCGGCTGGGTCTGTTTGATACGGCC
GTGCTTACTTTTTACGTTTTATTGCGCAGAGACCTTGGCATGCGTTCAGA
CATGGGTGCAGAAAATGGGAAAGAGAAGGCGAAGGGGAAAGGGGAGGGGA
TGAGTGCCGAGGAGGCGGAGACCTGGACGAAGGAGATGGCGTTCACGGCA
TTAGTGCCGTCCAAGGTGCCGGCGGTGGCGGTTTCAGATGTCTGCAACAA
GGAGGAGAAGGGCGACGATACGACGGAGGGAGGTGGGGTTTTGGATAGCG
ATGAGGATGGAGACGGGTTAGGTAAAGAGGTGCGAGTGACGTTAGTGACG
ACGACAAAGACTGAACAAGGGCCCTAAATGGTGGAATGGCCAAATGTCTC
GATAGCAAACAAGAGACTGAAAAAGGGTAGGAGAATGTGATATATCGTAT
TAATGACCCACGCAAACACATTCGCGTAATTGATAGAAAGGGGGGGGTGA
TGAAGAGCGCGTCGGGAAGAGAAAGAGAAGCTGCTGTGGTAGACGAAGAT
GCACAAATAGATGTTGTGTAATTCACCATTCGTTTGGCTTGTCTATAAAA
TTGGTGATGCGAGTGATACTTTCATGTGATTATGTCTAAATTTATGGGAT
GAAGAAAGATGTTGGCAGGGCTGTCAGAATTTAGGCCTACAAAAGGATAA
AGCACGAGCGAAAGTGACAACGAGAAATGGCAACATGTCAGCACGAGATG
ACATAAATAACTGTCATATCACAAGGTGATGGTATTTTCCCCCCCTCATC
CTCGCCTCACATCTTTTCTCCTTCCTTGTTCCCTCCCTCTAGCTGCACCT
ATCTCCTCGCTTTCAACAAAGCAGGGGACACGCTCGTGGTGGGGTAGACT
CACAATCACGTAGACATAGAGAAACACATAATAATATCATAAGTAGCAGA
AAACAAAGCAGGCTCAAAATCGAGTCGCATCCATCTTCACGATCTTGTCA
TTGTGTGGTGTACGTCAATTCTGTCCAGGGAGCCAGAGAGGATCCAGGTC
CCTCTCCCCTCCTTGCCCGTCATGCCCCGCCACGCACACATAAGACCCAC
CGATATATCGACCCCAAGCTCCCATCCCTGCCCCGTCCTCCGTACACACA
AAGACGCGCTCCAAGGGAAGTAGGTATCTTCACCAACGACTCATCTTCGA
GGGAAGGAAAAAGTGAGGAATGAAAGGAGGGGCAAATTTGCCACAATCGT
GTTAATCAATTCACACGTGGACGATACCCCCTCCTCCCCCCCTACCATCT
ACCCTCCCTCCCTCCCTCCC
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protein sequence of jgi.p|Nanoce1779_2|651819

>mRNA_6743-protein ID=mRNA_6743-protein|Name=jgi.p|Nanoce1779_2|651819|organism=Nannochloropsis oceanica|type=polypeptide|length=809bp
MEDGPHPPFHLPPIPLPSPSSGLPFLMNHTYPVPDLSDMVMDDIWMMQDQ
EQRQHHHHQQHAPNPPPSPAAAIGEIGAGGGGFDTFMLDPMTGHFQMQQQ
LPSLSPLPLPSHHYRHTRSQQDLHPTRHHKGQSDNDDDEEEEEEFYASDS
DFVIDEDDLSSLDEDRSNHQVRTPYLPPSIMNGMGSPDGMSTHSSYPDGS
VPHWAAGDGTGGGSGRSHGRGGARGNGGRGRRKGSLDVQQMTRRLKQKAE
SYERKKSRAKACRKVLKERFDTLLKVCGDPHIRRSDKVGLLTRAINLITT
MRQQLGGAGGAFFDVQRAPTAWRGGGNGHHYHHHSQGTRRSKRTIRGSAL
SAASTNNDDNKERDDNDDENGERQPGKRGCVNRVHSRKSPTRWIPVSMIQ
HQQNSDPTTPSPQTFTPPSTPTTSFPANLPLKERLATPKVTHTLLACLDS
AFLEPCRDVVPDKKEPTALQDVPWKEICRMRWKAEEAEFHEELHPTTTID
WRHVYVQQARALRLPHSPNFLSIGSVVSSGESGGVCGWLLARTSSYIPLP
SPVGSSSAPQALLSFILVMQNITHDMITIPHQRFEVHIKRQVPSQQQKQK
QGPRVIPTRSISNSSSTTTSSIGSTSDGDGEGEEQKEQANMPVILQEPTE
MQLKEQGLDPSLYQASLMSCQETDLNADGSIPWVCYEGVGGLRLGLFDTA
VLTFYVLLRRDLGMRSDMGAENGKEKAKGKGEGMSAEEAETWTKEMAFTA
LVPSKVPAVAVSDVCNKEEKGDDTTEGGGVLDSDEDGDGLGKEVRVTLVT
TTKTEQGP*
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mRNA from alignment at scaffold_18:600063..603432+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6743 ID=mRNA_6743|Name=jgi.p|Nanoce1779_2|651819|organism=Nannochloropsis oceanica|type=mRNA|length=3370bp|location=Sequence derived from alignment at scaffold_18:600063..603432+ (Nannochloropsis oceanica)
ATGGAGGACGGCCCCCACCCTCCCTTTCACCTTCCTCCAATACCACTTCC CTCACCGTCCTCCGGCCTTCCTTTCCTCATGAACCACACCTATCCTGTGC CTGACTTATCTGATATGGTTATGGATGACATTTGGATGATGCAAGATCAA GAGCAGCGGCAGCATCACCACCATCAGCAGCATGCCCCTAACCCCCCTCC GAGCCCTGCAGCTGCCATAGGGGAAATTGGGGCTGGCGGTGGTGGCTTTG ACACTTTTATGCTCGACCCCATGACGGGTCATTTTCAAATGCAGCAACAG CTTCCGTCCTTGTCCCCGCTACCCTTGCCGTCTCACCACTACAGACATAC CCGCAGTCAGCAAGACCTCCACCCTACCCGCCACCACAAGGGCCAGAGTG ACAACGATGACGATGAGGAGGAAGAGGAAGAATTTTACGCCAGTGACAGC GACTTTGTGATTGATGAGGATGATCTCTCAAGCCTGGATGAAGATCGGAG CAATCATCAGGTGCGCACTCCCTACCTCCCCCCTTCAATCATGAACGGCA TGGGCTCCCCTGACGGCATGAGCACCCACTCATCCTACCCGGATGGATCT GTCCCCCATTGGGCTGCGGGCGATGGAACTGGCGGCGGATCAGGCCGAAG CCATGGGCGTGGGGGTGCTCGTGGTAATGGCGGGCGTGGGCGACGTAAGG GCTCCCTGGACGTGCAGCAGATGACGCGACGCTTGAAGCAGAAGGCGGAG AGCTATGAGCGGAAGAAGAGTAGAGCCAAGGCCTGTCGCAAGGTGCTGAA GGAGCGGTTCGACACGCTGCTCAAGGTATGCGGTGATCCCCACATTCGAC GCTCGGACAAGGTCGGACTCTTGACGCGGGCGATTAATCTCATTACGACC ATGCGGCAGCAGCTGGGCGGCGCTGGAGGAGCCTTTTTCGACGTGCAACG GGCCCCAACGGCGTGGCGAGGCGGTGGGAACGGCCACCATTATCATCACC ACAGTCAGGGCACACGACGTAGCAAGCGCACAATACGGGGCTCGGCGCTG TCGGCGGCATCGACGAACAACGACGACAACAAAGAACGCGACGACAACGA TGACGAAAACGGAGAGCGCCAACCGGGGAAGCGAGGATGTGTGAACCGTG TGCACTCTCGAAAATCTCCGACTCGATGGATTCCTGTCAGTATGATCCAG CACCAACAAAACTCCGATCCCACGACTCCGTCGCCTCAGACCTTCACCCC TCCTTCGACGCCGACGACCTCCTTTCCAGCTAACTTGCCCTTGAAGGAAC GCCTGGCCACACCCAAAGTGACGCACACGCTGCTGGCGTGCTTGGATTCT GCTTTCCTCGAGCCCTGCCGAGATGTGGTACCCGATAAAAAAGAGCCAAC GGCCTTGCAGGACGTGCCCTGGAAAGAAATATGCCGCATGCGCTGGAAGG CGGAGGAAGCCGAATTCCACGAGGAGCTACACCCCACGACCACGATTGAC TGGCGCCACGTGTATGTGCAGCAAGCCCGGGCCTTGCGGCTACCTCACTC CCCAAACTTTTTGTCCATAGGCTCAGTAGTTTCGTCGGGGGAATCCGGGG GCGTCTGCGGCTGGCTGCTGGCGCGCACCTCTTCCTACATCCCTTTGCCC TCACCTGTGGGCAGCTCGAGTGCGCCGCAGGCCTTGCTCTCCTTTATCCT GGTGATGCAAAATATCACGCACGACATGATCACTATCCCACACCAGCGTT TTGAGGTGCATATCAAGAGACAGGTCCCGTCACAGCAGCAGAAGCAGAAG CAAGGCCCGCGTGTCATTCCCACTCGCTCCATCTCCAACAGTTCCTCCAC TACCACCTCCTCCATCGGCAGCACCAGCGACGGAGATGGCGAGGGGGAAG AGCAGAAAGAACAGGCGAATATGCCGGTGATACTACAAGAGCCAACAGAA ATGCAGCTAAAGGAGCAAGGGTTAGACCCCTCCCTGTATCAGGCTTCCCT CATGTCATGCCAAGAGACGGATTTGAACGCGGACGGCAGCATTCCCTGGG TGTGCTACGAGGGAGTTGGTGGCTTGCGGCTGGGTCTGTTTGATACGGCC GTGCTTACTTTTTACGTTTTATTGCGCAGAGACCTTGGCATGCGTTCAGA CATGGGTGCAGAAAATGGGAAAGAGAAGGCGAAGGGGAAAGGGGAGGGGA TGAGTGCCGAGGAGGCGGAGACCTGGACGAAGGAGATGGCGTTCACGGCA TTAGTGCCGTCCAAGGTGCCGGCGGTGGCGGTTTCAGATGTCTGCAACAA GGAGGAGAAGGGCGACGATACGACGGAGGGAGGTGGGGTTTTGGATAGCG ATGAGGATGGAGACGGGTTAGGTAAAGAGGTGCGAGTGACGTTAGTGACG ACGACAAAGACTGAACAAGGGCCCTAAATGGTGGAATGGCCAAATGTCTC GATAGCAAACAAGAGACTGAAAAAGGGTAGGAGAATGTGATATATCGTAT TAATGACCCACGCAAACACATTCGCGTAATTGATAGAAAGGGGGGGGTGA TGAAGAGCGCGTCGGGAAGAGAAAGAGAAGCTGCTGTGGTAGACGAAGAT GCACAAATAGATGTTGTGTAATTCACCATTCGTTTGGCTTGTCTATAAAA TTGGTGATGCGAGTGATACTTTCATGTGATTATGTCTAAATTTATGGGAT GAAGAAAGATGTTGGCAGGGCTGTCAGAATTTAGGCCTACAAAAGGATAA AGCACGAGCGAAAGTGACAACGAGAAATGGCAACATGTCAGCACGAGATG ACATAAATAACTGTCATATCACAAGGTGATGGTATTTTCCCCCCCTCATC CTCGCCTCACATCTTTTCTCCTTCCTTGTTCCCTCCCTCTAGCTGCACCT ATCTCCTCGCTTTCAACAAAGCAGGGGACACGCTCGTGGTGGGGTAGACT CACAATCACGTAGACATAGAGAAACACATAATAATATCATAAGTAGCAGA AAACAAAGCAGGCTCAAAATCGAGTCGCATCCATCTTCACGATCTTGTCA TTGTGTGGTGTACGTCAATTCTGTCCAGGGAGCCAGAGAGGATCCAGGTC CCTCTCCCCTCCTTGCCCGTCATGCCCCGCCACGCACACATAAGACCCAC CGATATATCGACCCCAAGCTCCCATCCCTGCCCCGTCCTCCGTACACACA AAGACGCGCTCCAAGGGAAGTAGGTATCTTCACCAACGACTCATCTTCGA GGGAAGGAAAAAGTGAGGAATGAAAGGAGGGGCAAATTTGCCACAATCGT GTTAATCAATTCACACGTGGACGATACCCCCTCCTCCCCCCCTACCATCT ACCCTCCCTCCCTCCCTCCC
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Coding sequence (CDS) from alignment at scaffold_18:600063..603432+

>mRNA_6743 ID=mRNA_6743|Name=jgi.p|Nanoce1779_2|651819|organism=Nannochloropsis oceanica|type=CDS|length=2427bp|location=Sequence derived from alignment at scaffold_18:600063..603432+ (Nannochloropsis oceanica)
ATGGAGGACGGCCCCCACCCTCCCTTTCACCTTCCTCCAATACCACTTCC
CTCACCGTCCTCCGGCCTTCCTTTCCTCATGAACCACACCTATCCTGTGC
CTGACTTATCTGATATGGTTATGGATGACATTTGGATGATGCAAGATCAA
GAGCAGCGGCAGCATCACCACCATCAGCAGCATGCCCCTAACCCCCCTCC
GAGCCCTGCAGCTGCCATAGGGGAAATTGGGGCTGGCGGTGGTGGCTTTG
ACACTTTTATGCTCGACCCCATGACGGGTCATTTTCAAATGCAGCAACAG
CTTCCGTCCTTGTCCCCGCTACCCTTGCCGTCTCACCACTACAGACATAC
CCGCAGTCAGCAAGACCTCCACCCTACCCGCCACCACAAGGGCCAGAGTG
ACAACGATGACGATGAGGAGGAAGAGGAAGAATTTTACGCCAGTGACAGC
GACTTTGTGATTGATGAGGATGATCTCTCAAGCCTGGATGAAGATCGGAG
CAATCATCAGGTGCGCACTCCCTACCTCCCCCCTTCAATCATGAACGGCA
TGGGCTCCCCTGACGGCATGAGCACCCACTCATCCTACCCGGATGGATCT
GTCCCCCATTGGGCTGCGGGCGATGGAACTGGCGGCGGATCAGGCCGAAG
CCATGGGCGTGGGGGTGCTCGTGGTAATGGCGGGCGTGGGCGACGTAAGG
GCTCCCTGGACGTGCAGCAGATGACGCGACGCTTGAAGCAGAAGGCGGAG
AGCTATGAGCGGAAGAAGAGTAGAGCCAAGGCCTGTCGCAAGGTGCTGAA
GGAGCGGTTCGACACGCTGCTCAAGGTATGCGGTGATCCCCACATTCGAC
GCTCGGACAAGGTCGGACTCTTGACGCGGGCGATTAATCTCATTACGACC
ATGCGGCAGCAGCTGGGCGGCGCTGGAGGAGCCTTTTTCGACGTGCAACG
GGCCCCAACGGCGTGGCGAGGCGGTGGGAACGGCCACCATTATCATCACC
ACAGTCAGGGCACACGACGTAGCAAGCGCACAATACGGGGCTCGGCGCTG
TCGGCGGCATCGACGAACAACGACGACAACAAAGAACGCGACGACAACGA
TGACGAAAACGGAGAGCGCCAACCGGGGAAGCGAGGATGTGTGAACCGTG
TGCACTCTCGAAAATCTCCGACTCGATGGATTCCTGTCAGTATGATCCAG
CACCAACAAAACTCCGATCCCACGACTCCGTCGCCTCAGACCTTCACCCC
TCCTTCGACGCCGACGACCTCCTTTCCAGCTAACTTGCCCTTGAAGGAAC
GCCTGGCCACACCCAAAGTGACGCACACGCTGCTGGCGTGCTTGGATTCT
GCTTTCCTCGAGCCCTGCCGAGATGTGGTACCCGATAAAAAAGAGCCAAC
GGCCTTGCAGGACGTGCCCTGGAAAGAAATATGCCGCATGCGCTGGAAGG
CGGAGGAAGCCGAATTCCACGAGGAGCTACACCCCACGACCACGATTGAC
TGGCGCCACGTGTATGTGCAGCAAGCCCGGGCCTTGCGGCTACCTCACTC
CCCAAACTTTTTGTCCATAGGCTCAGTAGTTTCGTCGGGGGAATCCGGGG
GCGTCTGCGGCTGGCTGCTGGCGCGCACCTCTTCCTACATCCCTTTGCCC
TCACCTGTGGGCAGCTCGAGTGCGCCGCAGGCCTTGCTCTCCTTTATCCT
GGTGATGCAAAATATCACGCACGACATGATCACTATCCCACACCAGCGTT
TTGAGGTGCATATCAAGAGACAGGTCCCGTCACAGCAGCAGAAGCAGAAG
CAAGGCCCGCGTGTCATTCCCACTCGCTCCATCTCCAACAGTTCCTCCAC
TACCACCTCCTCCATCGGCAGCACCAGCGACGGAGATGGCGAGGGGGAAG
AGCAGAAAGAACAGGCGAATATGCCGGTGATACTACAAGAGCCAACAGAA
ATGCAGCTAAAGGAGCAAGGGTTAGACCCCTCCCTGTATCAGGCTTCCCT
CATGTCATGCCAAGAGACGGATTTGAACGCGGACGGCAGCATTCCCTGGG
TGTGCTACGAGGGAGTTGGTGGCTTGCGGCTGGGTCTGTTTGATACGGCC
GTGCTTACTTTTTACGTTTTATTGCGCAGAGACCTTGGCATGCGTTCAGA
CATGGGTGCAGAAAATGGGAAAGAGAAGGCGAAGGGGAAAGGGGAGGGGA
TGAGTGCCGAGGAGGCGGAGACCTGGACGAAGGAGATGGCGTTCACGGCA
TTAGTGCCGTCCAAGGTGCCGGCGGTGGCGGTTTCAGATGTCTGCAACAA
GGAGGAGAAGGGCGACGATACGACGGAGGGAGGTGGGGTTTTGGATAGCG
ATGAGGATGGAGACGGGTTAGGTAAAGAGGTGCGAGTGACGTTAGTGACG
ACGACAAAGACTGAACAAGGGCCCTAA
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Synonyms
Publications