jgi.p|Nanoce1779_2|597900, mRNA_6741 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597900
Unique NamemRNA_6741
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1166
Alignment locationscaffold_18:595044..596209 +

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Properties
Property NameValue
TranscriptId597986
TrackFilteredModels2
ProteinId597900
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:595044..596209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597900gene_6741Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597900mRNA_6741-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6741CDS_6741Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6741 ID=mRNA_6741|Name=jgi.p|Nanoce1779_2|597900|organism=Nannochloropsis oceanica|type=mRNA|length=1166bp
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTTTCCCTTTCCGTT
GTTGATACACAAACATGTTGTCTCCCTCTTTCTTCGCATGTCCCCTGATT
GACATTTTTGACGCGGACGTGCATGACGAGCGCGGATGCGAACGGAGGAA
GGGAGGGGGAGAGGAAGAGACGGAAGGAAAGAGGACAGAGGACGAGGAGA
ATGTGACAGTGATGGAAGAAAAAAGGAGAGGAGAGGCAAAGGAGGAAAGA
AATATAACAAGAAAGAAAAAGAAAGGGATAAGAGGCCGTCAAGATCGGAA
TCCACAAGCAGGGCGACGAAGTGCTTATGGCCTAGCGAGGTATAGGTCTT
AGTAGGAGTGCACATCTCCCTCCTGCCCTTCTCTTTCTCTGACGGAGAAA
GGGAAGATCAACAGGGAAAAGAGTGTGAGTATTCACGTCTTGTTTTGCAT
CCCCTCCCGGGTGAAGGGGGGCGGAAGAACACCCTCGTTTCTTGATTGTT
GATTTCTTTCTTTGCGGCCAGCATGCGGGAGGTTCCGGACGTCGATGAAT
GCTTTACTCCTGGTTTAGGGCTCTCCTTTCAAATCCCCCCCTCCTGTGTC
TGTCGTCGATGCGTTTAATTTTCAAGTATATTTCAGTTAATCTTAATGGT
GTCGTGTTCACGGTCAGTTGTGAGTGTGTTGCCGACTCTTTCTGGCGCGT
GGGGCGTTATGTTGTGTGTGTGTGTGTTTTGTTTGTTTTGTTTTGTTTTG
TTTTGTTTCTTTGGGAAATCTGTTTTTGGTGTAGACAAGAGAAGTCTTGC
CTTACTCTTTGTTCCCCCTTGGCCGCTGCAGAGGTCGTCGCCGTCCACGT
TTGATGTGACGTCCTTTTCTTTTCCTTTTCTCCCGTCTCGAATGCGGGAG
TGGCCGAAGGTCAACAAGTCGCGAGATTCTTGTCTCACACACGCGGGGGG
GGGGGGGCTTGTGAGAGTGTGCCAGGCAGTTCGTATTTGTTCACGTGCCC
TCGCTGTGTGCCCCCTCTCTCCTTTTTTCAGGTGTCTTCGTCGGTTTGAT
AAGAAGCCTGCCCCAAGCTCTTTCTTCTTCTTCATTTTACGTGATTTGCC
TTTTTCGTAGTTGTCCCTATGCCATGTACATCACCTTCCTCCCTCCCTCC
CTCCCTCCCTCCCTCC
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protein sequence of jgi.p|Nanoce1779_2|597900

>mRNA_6741-protein ID=mRNA_6741-protein|Name=jgi.p|Nanoce1779_2|597900|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MVSCSRSVVSVLPTLSGAWGVMLCVCVFCLFCFVLFCFFGKSVFGVDKRS
LALLFVPPWPLQRSSPSTFDVTSFSFPFLPSRMREWPKVNKSRDSCLTHA
GGGGLVRVCQAVRICSRALAVCPLSPFFRCLRRFDKKPAPSSFFFFILRD
LPFS*
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mRNA from alignment at scaffold_18:595044..596209+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6741 ID=mRNA_6741|Name=jgi.p|Nanoce1779_2|597900|organism=Nannochloropsis oceanica|type=mRNA|length=1166bp|location=Sequence derived from alignment at scaffold_18:595044..596209+ (Nannochloropsis oceanica)
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTTTCCCTTTCCGTT
GTTGATACACAAACATGTTGTCTCCCTCTTTCTTCGCATGTCCCCTGATT
GACATTTTTGACGCGGACGTGCATGACGAGCGCGGATGCGAACGGAGGAA
GGGAGGGGGAGAGGAAGAGACGGAAGGAAAGAGGACAGAGGACGAGGAGA
ATGTGACAGTGATGGAAGAAAAAAGGAGAGGAGAGGCAAAGGAGGAAAGA
AATATAACAAGAAAGAAAAAGAAAGGGATAAGAGGCCGTCAAGATCGGAA
TCCACAAGCAGGGCGACGAAGTGCTTATGGCCTAGCGAGGTATAGGTCTT
AGTAGGAGTGCACATCTCCCTCCTGCCCTTCTCTTTCTCTGACGGAGAAA
GGGAAGATCAACAGGGAAAAGAGTGTGAGTATTCACGTCTTGTTTTGCAT
CCCCTCCCGGGTGAAGGGGGGCGGAAGAACACCCTCGTTTCTTGATTGTT
GATTTCTTTCTTTGCGGCCAGCATGCGGGAGGTTCCGGACGTCGATGAAT
GCTTTACTCCTGGTTTAGGGCTCTCCTTTCAAATCCCCCCCTCCTGTGTC
TGTCGTCGATGCGTTTAATTTTCAAGTATATTTCAGTTAATCTTAATGGT
GTCGTGTTCACGGTCAGTTGTGAGTGTGTTGCCGACTCTTTCTGGCGCGT
GGGGCGTTATGTTGTGTGTGTGTGTGTTTTGTTTGTTTTGTTTTGTTTTG
TTTTGTTTCTTTGGGAAATCTGTTTTTGGTGTAGACAAGAGAAGTCTTGC
CTTACTCTTTGTTCCCCCTTGGCCGCTGCAGAGGTCGTCGCCGTCCACGT
TTGATGTGACGTCCTTTTCTTTTCCTTTTCTCCCGTCTCGAATGCGGGAG
TGGCCGAAGGTCAACAAGTCGCGAGATTCTTGTCTCACACACGCGGGGGG
GGGGGGGCTTGTGAGAGTGTGCCAGGCAGTTCGTATTTGTTCACGTGCCC
TCGCTGTGTGCCCCCTCTCTCCTTTTTTCAGGTGTCTTCGTCGGTTTGAT
AAGAAGCCTGCCCCAAGCTCTTTCTTCTTCTTCATTTTACGTGATTTGCC
TTTTTCGTAGTTGTCCCTATGCCATGTACATCACCTTCCTCCCTCCCTCC
CTCCCTCCCTCCCTCC
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Coding sequence (CDS) from alignment at scaffold_18:595044..596209+

>mRNA_6741 ID=mRNA_6741|Name=jgi.p|Nanoce1779_2|597900|organism=Nannochloropsis oceanica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_18:595044..596209+ (Nannochloropsis oceanica)
ATGGTGTCGTGTTCACGGTCAGTTGTGAGTGTGTTGCCGACTCTTTCTGG
CGCGTGGGGCGTTATGTTGTGTGTGTGTGTGTTTTGTTTGTTTTGTTTTG
TTTTGTTTTGTTTCTTTGGGAAATCTGTTTTTGGTGTAGACAAGAGAAGT
CTTGCCTTACTCTTTGTTCCCCCTTGGCCGCTGCAGAGGTCGTCGCCGTC
CACGTTTGATGTGACGTCCTTTTCTTTTCCTTTTCTCCCGTCTCGAATGC
GGGAGTGGCCGAAGGTCAACAAGTCGCGAGATTCTTGTCTCACACACGCG
GGGGGGGGGGGGCTTGTGAGAGTGTGCCAGGCAGTTCGTATTTGTTCACG
TGCCCTCGCTGTGTGCCCCCTCTCTCCTTTTTTCAGGTGTCTTCGTCGGT
TTGATAAGAAGCCTGCCCCAAGCTCTTTCTTCTTCTTCATTTTACGTGAT
TTGCCTTTTTCGTAG
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Synonyms
Publications