jgi.p|Nanoce1779_2|573749, mRNA_674 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573749
Unique Name	mRNA_674
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1181
Alignment location	scaffold_2:161680..163368 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	573835
Track	FilteredModels2
ProteinId	573749

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:161680..163368 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573749	gene_674	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573749	mRNA_674-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_674	CDS_674	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:161680..163368+
coding sequence from alignment at scaffold_2:161680..163368+

mRNA sequence

>mRNA_674 ID=mRNA_674|Name=jgi.p|Nanoce1779_2|573749|organism=Nannochloropsis oceanica|type=mRNA|length=1181bp
CAGATTAATCGTCCTTGCCCTCTTGCTCGCCACGACCATCACCGCCTTCA
TCCTACCCCAACAGCATACAATCATGTCTGAGCAACCTGCCCGCATCCCG
CCCGCCGCCATCGCCTCCACGCCGCAGCATCCGCAGCATGCTCTTTCCCG
TCCGGGCACACACAAAGCCGGGGAAGGGGAGAGGCCGAAGTTAACCTTGG
GCTTCCTGGGAGGCGGCATGATGGCCTCGGCGCTTATCAAAGGTCTGGTG
AAGGCAGAGGTCTTGCCTAATTTTGCCATTTTTGTCAGCGACCCGTACAA
GCCTTCGCGGGATAAGCTGGTAGCGGAGGTGGGGGTAACCGGGTGTGATA
CCAACATCGAAGTAGCCGAGCACGCTCAAGTGATCATCTTGGCAGTCAAG
CCTGACGTAGTCCCCCAAGTTTTGCGGGAACTCTCCCAGCGCGTCACTCC
GCGCCACCTGATCATCTCCATTGCTGCCGGCGCTACGTTGCAGCTCCTTC
AACACCAACTTCCAGACCGAAGCCGCGTTGTGCGCGTCATGCCCAACACA
CCCTGCTTGGTGGGACAATCGGCGGCTGCCTTCGCGATGGGTGATAATTG
CTTGCCTGAAGACGCGGCGCTTGTGAAAAAGATTTTTTCGGCTGTGGGTG
CAGCGTTCGAAGTTAAGGAGAAAGATTTGAACGCCGTCACGGGTCTGAGC
GGCAGTGGCCCCGCGTATATCTTCCTCCTCATCGAAGCTCTCGCCGATGG
GGGGGTCCGCGCCGGCCTTCCGCGAAATATTGCCATGCAGCTGGCGACGC
AAACCGTCAAGGGGGCTGCCACCATGGTGCAGCTAACGGGGGAACACCCC
GGGGTGCTCAAGGACCAGGTAGCTAGCCCGGGAGGGACGACCATCGCGGG
TATCGAGGCCTTAGAGAAGGGGTCGTTTCGCGCGACTGTCATGTCGGCCG
TGACAGCGTCGGCGGATAGGGCGAAGCAGCTTGCAGAGCAGTCTAAACCG
ACCCCGAACCCGCGCCCGCCCATGACGTAAAAGGATGAAGAGAAAGGACT
GAAAGATTAGGGAGGATGAAGGGATTTTAAGAACAGAAGAGCATGAATGA
AGCGGAGGAGAGGAAAAATAAGGGCATGAGGCCAAGGAAGCCTCAGAAAT
TTAAGAAAGGAAAGCAAGCAAACTTGGATTA

protein sequence of jgi.p|Nanoce1779_2|573749

>mRNA_674-protein ID=mRNA_674-protein|Name=jgi.p|Nanoce1779_2|573749|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MSEQPARIPPAAIASTPQHPQHALSRPGTHKAGEGERPKLTLGFLGGGMM
ASALIKGLVKAEVLPNFAIFVSDPYKPSRDKLVAEVGVTGCDTNIEVAEH
AQVIILAVKPDVVPQVLRELSQRVTPRHLIISIAAGATLQLLQHQLPDRS
RVVRVMPNTPCLVGQSAAAFAMGDNCLPEDAALVKKIFSAVGAAFEVKEK
DLNAVTGLSGSGPAYIFLLIEALADGGVRAGLPRNIAMQLATQTVKGAAT
MVQLTGEHPGVLKDQVASPGGTTIAGIEALEKGSFRATVMSAVTASADRA
KQLAEQSKPTPNPRPPMT*

mRNA from alignment at scaffold_2:161680..163368+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_674 ID=mRNA_674|Name=jgi.p|Nanoce1779_2|573749|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp|location=Sequence derived from alignment at scaffold_2:161680..163368+ (Nannochloropsis oceanica)
CAGATTAATCGTCCTTGCCCTCTTGCTCGCCACGACCATCACCGCCTTCA
TCCTACCCCAACAGCATACAATCATGTCTGAGCAACCTGCCCGCATCCCG
CCCGCCGCCATCGCCTCCACGCCGCAGCATCCGCAGCATGCTCTTTCCCG
TCCGGGCACACACAAAGCCGGGGAAGGGGAGAGGCCGAAGTTAACCTTGG
GCTTCCTGGGAGGCGGCATGATGGCCTCGGCGCTTATCAAAGGTCTGGTG
AAGGCAGAGGTCTTGCCTAATTTTGCCATTTTTGTCAGCGACCCGTACAA
GCCTTCGCGGGATAAGCTGGTAGCGGAGGTGGGGGTAACCGGGTGTGATA
CCAACATCGAAGTAGCCGAGGTAGGTCGAGGTGGGGGAAGGACGGAAGGA
CGGAAGGACGGAAGGACGGAATGAGGGACGGATGGAGGAGAGAGAAGAAG
TTGCAACCCGGCCGCTCACACGAGCCCATTGGCGTCCTGTTATTTAAACC
TAACCTTTCATACATCTATGATCTGAATAAACAGCACGCTCAAGTGATCA
TCTTGGCAGTCAAGCCTGACGTAGTCCCCCAAGTTTTGCGGGAACTCTCC
CAGCGCGTCACTCCGCGCCACCTGATCATCTCCATTGCTGCCGGCGCTAC
GTTGCAGCTCCTTCAACACGTATGTAGACAAGTCGTCTCGTTATATACGT
CTTTGCTGTAGAGAAATTCACCTTTGGAAAAGGGTGATGAGTGCGAGGAC
TCCAACTGAATTGAATGCCTCCCTCCCCCCCTTCCTTGCTTCCTTTTCGC
CGCTCTTCGCTCCCCTCCCTTTTACAGCAACTTCCAGACCGAAGCCGCGT
TGTGCGCGTCATGCCCAACACACCCTGCTTGGTGGGACAATCGGCGGCTG
CCTTCGCGATGGGTGATAATTGCTTGCCTGAAGACGCGGCGCTTGTGAAA
AAGATTTTTTCGGCTGTGGGTGCAGCGTTCGAAGTTAAGGAGAAAGATTT
GAACGGTACCAATAAGTCGATGGGTGGATGGGTGGGAGGGGAGAAAAGAT
GACGAGTAAAGGTGGATATTACGGATATGGCATTTAATTCAGGAGGGCGC
TGTATGTATGACTGCTGACATGCGTACTGAATCGAAGCATCTCAACCCCG
GTCCTCTCTCCTTCCCTTCCTTCCTCTCCGTACCCTTACAGCCGTCACGG
GTCTGAGCGGCAGTGGCCCCGCGTATATCTTCCTCCTCATCGAAGCTCTC
GCCGATGGGGGGGTCCGCGCCGGCCTTCCGCGAAATATTGCCATGCAGCT
GGCGACGCAAACCGTCAAGGGGGCTGCCACCATGGTGCAGCTAACGGGGG
AACACCCCGGGGTGCTCAAGGACCAGGTAGCTAGCCCGGGAGGGACGACC
ATCGCGGGTATCGAGGCCTTAGAGAAGGGGTCGTTTCGCGCGACTGTCAT
GTCGGCCGTGACAGCGTCGGCGGATAGGGCGAAGCAGCTTGCAGAGCAGT
CTAAACCGACCCCGAACCCGCGCCCGCCCATGACGTAAAAGGATGAAGAG
AAAGGACTGAAAGATTAGGGAGGATGAAGGGATTTTAAGAACAGAAGAGC
ATGAATGAAGCGGAGGAGAGGAAAAATAAGGGCATGAGGCCAAGGAAGCC
TCAGAAATTTAAGAAAGGAAAGCAAGCAAACTTGGATTA

Coding sequence (CDS) from alignment at scaffold_2:161680..163368+

>mRNA_674 ID=mRNA_674|Name=jgi.p|Nanoce1779_2|573749|organism=Nannochloropsis oceanica|type=CDS|length=3828bp|location=Sequence derived from alignment at scaffold_2:161680..163368+ (Nannochloropsis oceanica)
ATGTCTGAGCAACCTGCCCGCATCCCGCCCGCCGCCATCGCCTCCACGCC
GCAGCATCCGCAGCATGCTCTTTCCCGTCCGGGCACACACAAAGCCGGGG
AAGGGGAGAGGCCGAAGTTAACCTTGGGCTTCCTGGGAGGCGGCATGATG
GCCTCGGCGCTTATCAAAGGTCTGGTGAAGGCAGAGGTCTTGCCTAATTT
TGCCATTTTTGTCAGCGACCCGTACAAGCCTTCGCGGGATAAGCTGGTAG
CGGAGGTGGGGGTAACCGGGTGTGATACCAACATCGAAGTAGCCGAGCAC
GCTCAAGTGATCATCTTGGCAGTCAAGCCTGACGTAGTCCCCCAAGTTTT
GCGGGAACTCTCCCAGCGCGTCACTCCGCGCCACCTGATCATCTCCATTG
CTGCCGGCGCTACGTTGCAGCTCCTTCAACACCAACTTCCAGACCGAAGC
CGCGTTGTGCGCGTCATGCCCAACACACCCTGCTTGGTGGGACAATCGGC
GGCTGCCTTCGCGATGGGTGATAATTGCTTGCCTGAAGACGCGGCGCTTG
TGAAAAAGATTTTTTCGGCTGTGGGTGCAGCGTTCGAAGTTAAGGAGAAA
GATTTGAACGCCGTCACGGGTCTGAGCGGCAGTGGCCCCGCGTATATCTT
CCTCCTCATCGAAGCTCTCGCCGATGGGGGGGTCCGCGCCGGCCTTCCGC
GAAATATTGCCATGCAGCTGGCGACGCAAACCGTCAAGGGGGCTGCCACC
ATGGTGCAGCTAACGGGGGAACACCCCGGGGTGCTCAAGGACCAGGTAGC
TAGCCCGGGAGGGACGACCATCGCGGGTATCGAGGCCTTAGAGAAGGGGT
CGTTTCGCGCGACTGTCATGTCGGCCGTGACAGCGTCGGCGGATAGGGCG
AAGCAGCTTGCAGAGCAGTCTAAACCGACCCCGAACCCGCGCCCGCCCAT
GACGTAAATGTCTGAGCAACCTGCCCGCATCCCGCCCGCCGCCATCGCCT
CCACGCCGCAGCATCCGCAGCATGCTCTTTCCCGTCCGGGCACACACAAA
GCCGGGGAAGGGGAGAGGCCGAAGTTAACCTTGGGCTTCCTGGGAGGCGG
CATGATGGCCTCGGCGCTTATCAAAGGTCTGGTGAAGGCAGAGGTCTTGC
CTAATTTTGCCATTTTTGTCAGCGACCCGTACAAGCCTTCGCGGGATAAG
CTGGTAGCGGAGGTGGGGGTAACCGGGTGTGATACCAACATCGAAGTAGC
CGAGCACGCTCAAGTGATCATCTTGGCAGTCAAGCCTGACGTAGTCCCCC
AAGTTTTGCGGGAACTCTCCCAGCGCGTCACTCCGCGCCACCTGATCATC
TCCATTGCTGCCGGCGCTACGTTGCAGCTCCTTCAACACCAACTTCCAGA
CCGAAGCCGCGTTGTGCGCGTCATGCCCAACACACCCTGCTTGGTGGGAC
AATCGGCGGCTGCCTTCGCGATGGGTGATAATTGCTTGCCTGAAGACGCG
GCGCTTGTGAAAAAGATTTTTTCGGCTGTGGGTGCAGCGTTCGAAGTTAA
GGAGAAAGATTTGAACGCCGTCACGGGTCTGAGCGGCAGTGGCCCCGCGT
ATATCTTCCTCCTCATCGAAGCTCTCGCCGATGGGGGGGTCCGCGCCGGC
CTTCCGCGAAATATTGCCATGCAGCTGGCGACGCAAACCGTCAAGGGGGC
TGCCACCATGGTGCAGCTAACGGGGGAACACCCCGGGGTGCTCAAGGACC
AGGTAGCTAGCCCGGGAGGGACGACCATCGCGGGTATCGAGGCCTTAGAG
AAGGGGTCGTTTCGCGCGACTGTCATGTCGGCCGTGACAGCGTCGGCGGA
TAGGGCGAAGCAGCTTGCAGAGCAGTCTAAACCGACCCCGAACCCGCGCC
CGCCCATGACGTAAATGTCTGAGCAACCTGCCCGCATCCCGCCCGCCGCC
ATCGCCTCCACGCCGCAGCATCCGCAGCATGCTCTTTCCCGTCCGGGCAC
ACACAAAGCCGGGGAAGGGGAGAGGCCGAAGTTAACCTTGGGCTTCCTGG
GAGGCGGCATGATGGCCTCGGCGCTTATCAAAGGTCTGGTGAAGGCAGAG
GTCTTGCCTAATTTTGCCATTTTTGTCAGCGACCCGTACAAGCCTTCGCG
GGATAAGCTGGTAGCGGAGGTGGGGGTAACCGGGTGTGATACCAACATCG
AAGTAGCCGAGCACGCTCAAGTGATCATCTTGGCAGTCAAGCCTGACGTA
GTCCCCCAAGTTTTGCGGGAACTCTCCCAGCGCGTCACTCCGCGCCACCT
GATCATCTCCATTGCTGCCGGCGCTACGTTGCAGCTCCTTCAACACCAAC
TTCCAGACCGAAGCCGCGTTGTGCGCGTCATGCCCAACACACCCTGCTTG
GTGGGACAATCGGCGGCTGCCTTCGCGATGGGTGATAATTGCTTGCCTGA
AGACGCGGCGCTTGTGAAAAAGATTTTTTCGGCTGTGGGTGCAGCGTTCG
AAGTTAAGGAGAAAGATTTGAACGCCGTCACGGGTCTGAGCGGCAGTGGC
CCCGCGTATATCTTCCTCCTCATCGAAGCTCTCGCCGATGGGGGGGTCCG
CGCCGGCCTTCCGCGAAATATTGCCATGCAGCTGGCGACGCAAACCGTCA
AGGGGGCTGCCACCATGGTGCAGCTAACGGGGGAACACCCCGGGGTGCTC
AAGGACCAGGTAGCTAGCCCGGGAGGGACGACCATCGCGGGTATCGAGGC
CTTAGAGAAGGGGTCGTTTCGCGCGACTGTCATGTCGGCCGTGACAGCGT
CGGCGGATAGGGCGAAGCAGCTTGCAGAGCAGTCTAAACCGACCCCGAAC
CCGCGCCCGCCCATGACGTAAATGTCTGAGCAACCTGCCCGCATCCCGCC
CGCCGCCATCGCCTCCACGCCGCAGCATCCGCAGCATGCTCTTTCCCGTC
CGGGCACACACAAAGCCGGGGAAGGGGAGAGGCCGAAGTTAACCTTGGGC
TTCCTGGGAGGCGGCATGATGGCCTCGGCGCTTATCAAAGGTCTGGTGAA
GGCAGAGGTCTTGCCTAATTTTGCCATTTTTGTCAGCGACCCGTACAAGC
CTTCGCGGGATAAGCTGGTAGCGGAGGTGGGGGTAACCGGGTGTGATACC
AACATCGAAGTAGCCGAGCACGCTCAAGTGATCATCTTGGCAGTCAAGCC
TGACGTAGTCCCCCAAGTTTTGCGGGAACTCTCCCAGCGCGTCACTCCGC
GCCACCTGATCATCTCCATTGCTGCCGGCGCTACGTTGCAGCTCCTTCAA
CACCAACTTCCAGACCGAAGCCGCGTTGTGCGCGTCATGCCCAACACACC
CTGCTTGGTGGGACAATCGGCGGCTGCCTTCGCGATGGGTGATAATTGCT
TGCCTGAAGACGCGGCGCTTGTGAAAAAGATTTTTTCGGCTGTGGGTGCA
GCGTTCGAAGTTAAGGAGAAAGATTTGAACGCCGTCACGGGTCTGAGCGG
CAGTGGCCCCGCGTATATCTTCCTCCTCATCGAAGCTCTCGCCGATGGGG
GGGTCCGCGCCGGCCTTCCGCGAAATATTGCCATGCAGCTGGCGACGCAA
ACCGTCAAGGGGGCTGCCACCATGGTGCAGCTAACGGGGGAACACCCCGG
GGTGCTCAAGGACCAGGTAGCTAGCCCGGGAGGGACGACCATCGCGGGTA
TCGAGGCCTTAGAGAAGGGGTCGTTTCGCGCGACTGTCATGTCGGCCGTG
ACAGCGTCGGCGGATAGGGCGAAGCAGCTTGCAGAGCAGTCTAAACCGAC
CCCGAACCCGCGCCCGCCCATGACGTAA

Synonyms

Publications