jgi.p|Nanoce1779_2|597881, mRNA_6736 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597881
Unique Name	mRNA_6736
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1226
Alignment location	scaffold_18:578443..580736 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597967
Track	FilteredModels2
ProteinId	597881

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:578443..580736 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597881	gene_6736	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597881	mRNA_6736-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6736	CDS_6736	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:578443..580736+
coding sequence from alignment at scaffold_18:578443..580736+

mRNA sequence

>mRNA_6736 ID=mRNA_6736|Name=jgi.p|Nanoce1779_2|597881|organism=Nannochloropsis oceanica|type=mRNA|length=1226bp
CAGTTTTAACAGGCAGCAGCAGCCCCCCCGTCTTCCGTCCACCCTACGAC
TATACCGAGCACAACAAGGACCAACGATGACGGCACCTCCTTGTCCTCGC
CAGCTGCTCCAATGTGCTGCCACTACCTTCCATCTCCTCTCCCTTGTCCT
GTCCCTCACCGCGATCTCGGCTACCGCGAGTGTCCTCCCTCGATCCCGCG
GAACAAGCAGGCACCACCTTCCCAGTGCGTTCACATTCCTGGGACTCCCC
ATCCCGGCCCTTCCTAATATCGAGATACCCTCGTCTCCTATCGAGGTGAA
GCTCGTATACCAGCGCGTCATCGACCCAATACACTATGGCGATTATTGCG
GCCCTACACCTGAGATTACGCCGTCCACGGGCTGTCAGCACCCTCTGAAT
CTAGCGGCCTTGGACGACACGGACGAGGTGTGTCGCCTGCACGACCATTT
TTACTGCAAGTGTGACTCGATCTACGCCAGACAAGGCAAAACGGCGCCCT
CCTCGGCCCTCATCGCCACTCGTTCAGTCCAGTCGGGTTTCCGCAAGACC
TATCTCGCCAACCTCGACCGCGACTACTACCTGTGTGTCCACGAGGCAGA
CCAGGAGATGCTGGGGCATTTCGACACGCTGGTGTCGGAGGGCCGCCTGC
CTGCCCAGTACTGGGATCCTGTGACCCGCTGGAAGTTTGACTCGCTCTTG
GACGTTTTTAGGAGGAACATGGCGGTGGACGCCGAGATCCTCGACCTGCA
AGCACAGGGCGGGATGGAAAGAGGGCGAGCCTACTGGTTTGGGGAGGACG
AGAAGAAGGGGGAGGAAGGAATGGTGCAGGGCAGCAGCCATGAGTCCCGG
ATGATCAATGGGAAGAGCAAGGGACTCAAGTCGTCCTCACAGGTAGTGAC
GGCGACGACGAGCAGCAACGGCAAGCCTTGATGAAGGGGGAAGGAGTACG
AGAAGAGCTGTAAATTTATGTGTTCCATGTGCGGGGAATTGTGACGTTGA
ACAGAACATGCGAATGAAAATCACTATTTACGCACACACCCTCCCACACA
CACTCTCACATACATATATATATGTATATGTCGTGAGTGTTGTATGTGCG
GTGTATGTCGGTGGAAAATGAGAAAAGTGAGACATAACGTGACTGAGGCA
TATAGTTAGAAATTGTACGGAGACGAGTGAGAAGGCAAGACACTTCCAAA
AAGAAGGAAAAGAATCCCGAATATTA

protein sequence of jgi.p|Nanoce1779_2|597881

>mRNA_6736-protein ID=mRNA_6736-protein|Name=jgi.p|Nanoce1779_2|597881|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MTAPPCPRQLLQCAATTFHLLSLVLSLTAISATASVLPRSRGTSRHHLPS
AFTFLGLPIPALPNIEIPSSPIEVKLVYQRVIDPIHYGDYCGPTPEITPS
TGCQHPLNLAALDDTDEVCRLHDHFYCKCDSIYARQGKTAPSSALIATRS
VQSGFRKTYLANLDRDYYLCVHEADQEMLGHFDTLVSEGRLPAQYWDPVT
RWKFDSLLDVFRRNMAVDAEILDLQAQGGMERGRAYWFGEDEKKGEEGMV
QGSSHESRMINGKSKGLKSSSQVVTATTSSNGKP*

mRNA from alignment at scaffold_18:578443..580736+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6736 ID=mRNA_6736|Name=jgi.p|Nanoce1779_2|597881|organism=Nannochloropsis oceanica|type=mRNA|length=2294bp|location=Sequence derived from alignment at scaffold_18:578443..580736+ (Nannochloropsis oceanica)
CAGTTTTAACAGGCAGCAGCAGCCCCCCCGTCTTCCGTCCACCCTACGAC
TATACCGAGCACAACAAGGACCAACGATGACGGCACCTCCTTGTCCTCGC
CAGCTGCTCCAATGTGCTGCCACTACCTTCCATCTCCTCTCCCTTGTCCT
GTCCCTCACCGCGATCTCGGCTACCGCGAGTGTCCTCCCTCGATCCCGCG
GAACAAGCAGGCACCACCTTCCCAGTGCGTTCACATTCCTGGGACTCCCC
ATCCCGGCCCTTCCTAATATCGAGATACCCTCGTCTCCTATCGAGGTGAA
GCTCGTATACCAGCGCGTCATCGACCCAATGTATGTGGAGGGATGGGAAG
GGAGGAAGGTGAAGGGAGAGAGGAGAGGCGAGGTAAACAAAATCTCGGCT
TGGGGTCATTCACGCACGATTAATCCTTCCATTTATACATGTATATATGT
ACATATGCCCTTATTTTCAATCTTTCAGACACTATGGCGATTATTGCGGC
CCTACACCTGAGGTACGTCCCTCACCTGTCCCTCTTCCCTCTCTCCCTTT
TTCCTTTTTTGGGGGGTGTAGGTGCGTGCTCACGAGAATGCAGGCCATGC
TGAAGCTGTCGTGCCTTTTCCATCCTTCCTACCATCTTCCACATTCCGTT
CAGATAACCCTCTGCACGGGCTGTCGGCACCCGCCGAATCTAGTATTGAA
TGAATGATTGATTGAATGCTCGATCAATCTAACAGCCTTATCATTCCTAA
TCTAGTAGCCTCATCCTTTTGAAACCTCCCCCCTCTTCCCCCTTCCTCTT
TTTCTCCCTCCTTCCATCAGATTACGCCGTCCACGGGCTGTCAGCACCCT
CTGAATCTAGCGGCCTTGGACGACACGGACGAGGTGTGTCGCCTGCACGA
CCATTTTTACTGCAAGTGTGACTCGATCTACGCCAGGTAGGGAGGTAGGG
AGGGAGGGAGGGAGGCATGGGACGACATGCTTGGTAGGGGTAGGGATGAA
GAAAGAGGGAGGGAGGCAAGGAGGCAGGGGGTGGGAGAGGGCGTTGAATG
GAAGGAAAGCACGATAGACACTAGGACTCCTGGAGGCCTTGCTTTGTCGG
TCAATGGGATGCCGATCTGATTTGTTTGACCTGGTGGTCAAGACTCACCC
TTTCCTCCCTCCCTCCCTCCATCCCTCCCTCCCCCCCTCCCTCCCTCCCT
CACTCTTCCTTAGACAAGGCAAAACGGCGCCCTCCTCGGCCCTCATCGCC
ACTCGTTCAGTCCAGTCGGGTTTCCGCAAGACCTATCTCGCCAACCTCGA
CCGCGACTACTACCTGTGTGTCCACGAGGCAGACCAGGAGATGCTGGGGC
ATTTCGACACGCTGGTGTCGGAGGGTGAGGGAGAGAGGGAAAGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGCAGACGAGAAAGAGGGAGAACAAGGTA
CTGAATGGTTGACTTAAACGTGAACTAAATAAATAAATCAATAAGTAAAT
GTCGGTAAACACATGTAAACAAACAAGGAAGCGTTGTCCCGGACCATTCA
CCCCCCCTATCCCTTCCGCCCCCTTTCCCTCCCGTCAGGCCGCCTGCCTG
CCCAGTACTGGGATCCTGTGACCCGCTGGAAGTTTGACTCGCTCTTGGAC
GTTTTTAGGAGGAACATGGCGGTGGACGCCGAGATCCTCGACCTGGTGAG
AGAGGGAGGGAGGGAGCGAGGACGAGAGAAGGGTTGAGTGGAGTTGTGGA
TGCATGCGTACTGATTTATACATTAATGTTTTCCTTCCTCCTTATGTATA
CATACATTTCACACAGCAAGCACAGGGCGGGATGGAAAGAGGGCGAGCCT
ACTGGTTTGGGGAGGACGAGAAGAAGGGGGAGGAAGGAATGGTGCAGGGC
AGCAGCCATGAGTCCCGGATGATCAATGGGAAGAGCAAGGGACTCAAGTC
GTCCTCACAGGTAGTGACGGCGACGACGAGCAGCAACGGCAAGCCTTGAT
GAAGGGGGAAGGAGTACGAGAAGAGCTGTAAATTTATGTGTTCCATGTGC
GGGGAATTGTGACGTTGAACAGAACATGCGAATGAAAATCACTATTTACG
CACACACCCTCCCACACACACTCTCACATACATATATATATGTATATGTC
GTGAGTGTTGTATGTGCGGTGTATGTCGGTGGAAAATGAGAAAAGTGAGA
CATAACGTGACTGAGGCATATAGTTAGAAATTGTACGGAGACGAGTGAGA
AGGCAAGACACTTCCAAAAAGAAGGAAAAGAATCCCGAATATTA

Coding sequence (CDS) from alignment at scaffold_18:578443..580736+

>mRNA_6736 ID=mRNA_6736|Name=jgi.p|Nanoce1779_2|597881|organism=Nannochloropsis oceanica|type=CDS|length=5130bp|location=Sequence derived from alignment at scaffold_18:578443..580736+ (Nannochloropsis oceanica)
ATGACGGCACCTCCTTGTCCTCGCCAGCTGCTCCAATGTGCTGCCACTAC
CTTCCATCTCCTCTCCCTTGTCCTGTCCCTCACCGCGATCTCGGCTACCG
CGAGTGTCCTCCCTCGATCCCGCGGAACAAGCAGGCACCACCTTCCCAGT
GCGTTCACATTCCTGGGACTCCCCATCCCGGCCCTTCCTAATATCGAGAT
ACCCTCGTCTCCTATCGAGGTGAAGCTCGTATACCAGCGCGTCATCGACC
CAATACACTATGGCGATTATTGCGGCCCTACACCTGAGATTACGCCGTCC
ACGGGCTGTCAGCACCCTCTGAATCTAGCGGCCTTGGACGACACGGACGA
GGTGTGTCGCCTGCACGACCATTTTTACTGCAAGTGTGACTCGATCTACG
CCAGACAAGGCAAAACGGCGCCCTCCTCGGCCCTCATCGCCACTCGTTCA
GTCCAGTCGGGTTTCCGCAAGACCTATCTCGCCAACCTCGACCGCGACTA
CTACCTGTGTGTCCACGAGGCAGACCAGGAGATGCTGGGGCATTTCGACA
CGCTGGTGTCGGAGGGCCGCCTGCCTGCCCAGTACTGGGATCCTGTGACC
CGCTGGAAGTTTGACTCGCTCTTGGACGTTTTTAGGAGGAACATGGCGGT
GGACGCCGAGATCCTCGACCTGCAAGCACAGGGCGGGATGGAAAGAGGGC
GAGCCTACTGGTTTGGGGAGGACGAGAAGAAGGGGGAGGAAGGAATGGTG
CAGGGCAGCAGCCATGAGTCCCGGATGATCAATGGGAAGAGCAAGGGACT
CAAGTCGTCCTCACAGGTAGTGACGGCGACGACGAGCAGCAACGGCAAGC
CTTGAATGACGGCACCTCCTTGTCCTCGCCAGCTGCTCCAATGTGCTGCC
ACTACCTTCCATCTCCTCTCCCTTGTCCTGTCCCTCACCGCGATCTCGGC
TACCGCGAGTGTCCTCCCTCGATCCCGCGGAACAAGCAGGCACCACCTTC
CCAGTGCGTTCACATTCCTGGGACTCCCCATCCCGGCCCTTCCTAATATC
GAGATACCCTCGTCTCCTATCGAGGTGAAGCTCGTATACCAGCGCGTCAT
CGACCCAATACACTATGGCGATTATTGCGGCCCTACACCTGAGATTACGC
CGTCCACGGGCTGTCAGCACCCTCTGAATCTAGCGGCCTTGGACGACACG
GACGAGGTGTGTCGCCTGCACGACCATTTTTACTGCAAGTGTGACTCGAT
CTACGCCAGACAAGGCAAAACGGCGCCCTCCTCGGCCCTCATCGCCACTC
GTTCAGTCCAGTCGGGTTTCCGCAAGACCTATCTCGCCAACCTCGACCGC
GACTACTACCTGTGTGTCCACGAGGCAGACCAGGAGATGCTGGGGCATTT
CGACACGCTGGTGTCGGAGGGCCGCCTGCCTGCCCAGTACTGGGATCCTG
TGACCCGCTGGAAGTTTGACTCGCTCTTGGACGTTTTTAGGAGGAACATG
GCGGTGGACGCCGAGATCCTCGACCTGCAAGCACAGGGCGGGATGGAAAG
AGGGCGAGCCTACTGGTTTGGGGAGGACGAGAAGAAGGGGGAGGAAGGAA
TGGTGCAGGGCAGCAGCCATGAGTCCCGGATGATCAATGGGAAGAGCAAG
GGACTCAAGTCGTCCTCACAGGTAGTGACGGCGACGACGAGCAGCAACGG
CAAGCCTTGAATGACGGCACCTCCTTGTCCTCGCCAGCTGCTCCAATGTG
CTGCCACTACCTTCCATCTCCTCTCCCTTGTCCTGTCCCTCACCGCGATC
TCGGCTACCGCGAGTGTCCTCCCTCGATCCCGCGGAACAAGCAGGCACCA
CCTTCCCAGTGCGTTCACATTCCTGGGACTCCCCATCCCGGCCCTTCCTA
ATATCGAGATACCCTCGTCTCCTATCGAGGTGAAGCTCGTATACCAGCGC
GTCATCGACCCAATACACTATGGCGATTATTGCGGCCCTACACCTGAGAT
TACGCCGTCCACGGGCTGTCAGCACCCTCTGAATCTAGCGGCCTTGGACG
ACACGGACGAGGTGTGTCGCCTGCACGACCATTTTTACTGCAAGTGTGAC
TCGATCTACGCCAGACAAGGCAAAACGGCGCCCTCCTCGGCCCTCATCGC
CACTCGTTCAGTCCAGTCGGGTTTCCGCAAGACCTATCTCGCCAACCTCG
ACCGCGACTACTACCTGTGTGTCCACGAGGCAGACCAGGAGATGCTGGGG
CATTTCGACACGCTGGTGTCGGAGGGCCGCCTGCCTGCCCAGTACTGGGA
TCCTGTGACCCGCTGGAAGTTTGACTCGCTCTTGGACGTTTTTAGGAGGA
ACATGGCGGTGGACGCCGAGATCCTCGACCTGCAAGCACAGGGCGGGATG
GAAAGAGGGCGAGCCTACTGGTTTGGGGAGGACGAGAAGAAGGGGGAGGA
AGGAATGGTGCAGGGCAGCAGCCATGAGTCCCGGATGATCAATGGGAAGA
GCAAGGGACTCAAGTCGTCCTCACAGGTAGTGACGGCGACGACGAGCAGC
AACGGCAAGCCTTGAATGACGGCACCTCCTTGTCCTCGCCAGCTGCTCCA
ATGTGCTGCCACTACCTTCCATCTCCTCTCCCTTGTCCTGTCCCTCACCG
CGATCTCGGCTACCGCGAGTGTCCTCCCTCGATCCCGCGGAACAAGCAGG
CACCACCTTCCCAGTGCGTTCACATTCCTGGGACTCCCCATCCCGGCCCT
TCCTAATATCGAGATACCCTCGTCTCCTATCGAGGTGAAGCTCGTATACC
AGCGCGTCATCGACCCAATACACTATGGCGATTATTGCGGCCCTACACCT
GAGATTACGCCGTCCACGGGCTGTCAGCACCCTCTGAATCTAGCGGCCTT
GGACGACACGGACGAGGTGTGTCGCCTGCACGACCATTTTTACTGCAAGT
GTGACTCGATCTACGCCAGACAAGGCAAAACGGCGCCCTCCTCGGCCCTC
ATCGCCACTCGTTCAGTCCAGTCGGGTTTCCGCAAGACCTATCTCGCCAA
CCTCGACCGCGACTACTACCTGTGTGTCCACGAGGCAGACCAGGAGATGC
TGGGGCATTTCGACACGCTGGTGTCGGAGGGCCGCCTGCCTGCCCAGTAC
TGGGATCCTGTGACCCGCTGGAAGTTTGACTCGCTCTTGGACGTTTTTAG
GAGGAACATGGCGGTGGACGCCGAGATCCTCGACCTGCAAGCACAGGGCG
GGATGGAAAGAGGGCGAGCCTACTGGTTTGGGGAGGACGAGAAGAAGGGG
GAGGAAGGAATGGTGCAGGGCAGCAGCCATGAGTCCCGGATGATCAATGG
GAAGAGCAAGGGACTCAAGTCGTCCTCACAGGTAGTGACGGCGACGACGA
GCAGCAACGGCAAGCCTTGAATGACGGCACCTCCTTGTCCTCGCCAGCTG
CTCCAATGTGCTGCCACTACCTTCCATCTCCTCTCCCTTGTCCTGTCCCT
CACCGCGATCTCGGCTACCGCGAGTGTCCTCCCTCGATCCCGCGGAACAA
GCAGGCACCACCTTCCCAGTGCGTTCACATTCCTGGGACTCCCCATCCCG
GCCCTTCCTAATATCGAGATACCCTCGTCTCCTATCGAGGTGAAGCTCGT
ATACCAGCGCGTCATCGACCCAATACACTATGGCGATTATTGCGGCCCTA
CACCTGAGATTACGCCGTCCACGGGCTGTCAGCACCCTCTGAATCTAGCG
GCCTTGGACGACACGGACGAGGTGTGTCGCCTGCACGACCATTTTTACTG
CAAGTGTGACTCGATCTACGCCAGACAAGGCAAAACGGCGCCCTCCTCGG
CCCTCATCGCCACTCGTTCAGTCCAGTCGGGTTTCCGCAAGACCTATCTC
GCCAACCTCGACCGCGACTACTACCTGTGTGTCCACGAGGCAGACCAGGA
GATGCTGGGGCATTTCGACACGCTGGTGTCGGAGGGCCGCCTGCCTGCCC
AGTACTGGGATCCTGTGACCCGCTGGAAGTTTGACTCGCTCTTGGACGTT
TTTAGGAGGAACATGGCGGTGGACGCCGAGATCCTCGACCTGCAAGCACA
GGGCGGGATGGAAAGAGGGCGAGCCTACTGGTTTGGGGAGGACGAGAAGA
AGGGGGAGGAAGGAATGGTGCAGGGCAGCAGCCATGAGTCCCGGATGATC
AATGGGAAGAGCAAGGGACTCAAGTCGTCCTCACAGGTAGTGACGGCGAC
GACGAGCAGCAACGGCAAGCCTTGAATGACGGCACCTCCTTGTCCTCGCC
AGCTGCTCCAATGTGCTGCCACTACCTTCCATCTCCTCTCCCTTGTCCTG
TCCCTCACCGCGATCTCGGCTACCGCGAGTGTCCTCCCTCGATCCCGCGG
AACAAGCAGGCACCACCTTCCCAGTGCGTTCACATTCCTGGGACTCCCCA
TCCCGGCCCTTCCTAATATCGAGATACCCTCGTCTCCTATCGAGGTGAAG
CTCGTATACCAGCGCGTCATCGACCCAATACACTATGGCGATTATTGCGG
CCCTACACCTGAGATTACGCCGTCCACGGGCTGTCAGCACCCTCTGAATC
TAGCGGCCTTGGACGACACGGACGAGGTGTGTCGCCTGCACGACCATTTT
TACTGCAAGTGTGACTCGATCTACGCCAGACAAGGCAAAACGGCGCCCTC
CTCGGCCCTCATCGCCACTCGTTCAGTCCAGTCGGGTTTCCGCAAGACCT
ATCTCGCCAACCTCGACCGCGACTACTACCTGTGTGTCCACGAGGCAGAC
CAGGAGATGCTGGGGCATTTCGACACGCTGGTGTCGGAGGGCCGCCTGCC
TGCCCAGTACTGGGATCCTGTGACCCGCTGGAAGTTTGACTCGCTCTTGG
ACGTTTTTAGGAGGAACATGGCGGTGGACGCCGAGATCCTCGACCTGCAA
GCACAGGGCGGGATGGAAAGAGGGCGAGCCTACTGGTTTGGGGAGGACGA
GAAGAAGGGGGAGGAAGGAATGGTGCAGGGCAGCAGCCATGAGTCCCGGA
TGATCAATGGGAAGAGCAAGGGACTCAAGTCGTCCTCACAGGTAGTGACG
GCGACGACGAGCAGCAACGGCAAGCCTTGA

Synonyms

Publications