jgi.p|Nanoce1779_2|623761, mRNA_6735 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|623761
Unique NamemRNA_6735
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length528
Alignment locationscaffold_18:577118..577645 -

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Properties
Property NameValue
TranscriptId623847
TrackFilteredModels2
ProteinId623761
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:577118..577645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|623761gene_6735Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6735CDS_6735Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|623761mRNA_6735-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6735 ID=mRNA_6735|Name=jgi.p|Nanoce1779_2|623761|organism=Nannochloropsis oceanica|type=mRNA|length=528bp
ATGGACTCAGCCCGCCGCCTCCTGGGAGTAGAAGCCCGACCCAAGACATG
GTGTGAACAAATGGAAGAAGACATGTGCTGGTGGTGTCCTTCCTTGACTT
GGCAACATCGCATTTTTGGCTGCCTCTGCTGTTTCGTTCTGGGTCTCATC
CTCGAGGTGGGCTCGTTCTTCCGGTTCACCAAGCTCCTGACGGGCAGTCC
CGGGCCTTTCGCCGTCATGTACACCCTAGGAAATCTCATTTCCCTCGCAG
GGTCGTGCTTCTTATCTGGGCCATTTGCACAGGCGAAAAGCATGTTCCAT
CCGACTCGGGCCCTGTGTACGGCGGTGTATGTGCTGACGTTGGTGTTGAC
CCTCGCAGTGGCCTTCTCGGATGTACCAGGTCAGGGAGCCTTGTTAGTGA
TCATGATCATTATCCAGTTTATGTCCTTGTGTTACTATGTTTTATCGTAC
ATCCCATTCGCGAGGCAGATGGTGTGGCAGACGTGCGGGAGCTGCTTGGG
GCTGGGGCATGATGGGTCATTGGGATGA
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protein sequence of jgi.p|Nanoce1779_2|623761

>mRNA_6735-protein ID=mRNA_6735-protein|Name=jgi.p|Nanoce1779_2|623761|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MDSARRLLGVEARPKTWCEQMEEDMCWWCPSLTWQHRIFGCLCCFVLGLI
LEVGSFFRFTKLLTGSPGPFAVMYTLGNLISLAGSCFLSGPFAQAKSMFH
PTRALCTAVYVLTLVLTLAVAFSDVPGQGALLVIMIIIQFMSLCYYVLSY
IPFARQMVWQTCGSCLGLGHDGSLG*
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mRNA from alignment at scaffold_18:577118..577645-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6735 ID=mRNA_6735|Name=jgi.p|Nanoce1779_2|623761|organism=Nannochloropsis oceanica|type=mRNA|length=528bp|location=Sequence derived from alignment at scaffold_18:577118..577645- (Nannochloropsis oceanica)
ATGGACTCAGCCCGCCGCCTCCTGGGAGTAGAAGCCCGACCCAAGACATG
GTGTGAACAAATGGAAGAAGACATGTGCTGGTGGTGTCCTTCCTTGACTT
GGCAACATCGCATTTTTGGCTGCCTCTGCTGTTTCGTTCTGGGTCTCATC
CTCGAGGTGGGCTCGTTCTTCCGGTTCACCAAGCTCCTGACGGGCAGTCC
CGGGCCTTTCGCCGTCATGTACACCCTAGGAAATCTCATTTCCCTCGCAG
GGTCGTGCTTCTTATCTGGGCCATTTGCACAGGCGAAAAGCATGTTCCAT
CCGACTCGGGCCCTGTGTACGGCGGTGTATGTGCTGACGTTGGTGTTGAC
CCTCGCAGTGGCCTTCTCGGATGTACCAGGTCAGGGAGCCTTGTTAGTGA
TCATGATCATTATCCAGTTTATGTCCTTGTGTTACTATGTTTTATCGTAC
ATCCCATTCGCGAGGCAGATGGTGTGGCAGACGTGCGGGAGCTGCTTGGG
GCTGGGGCATGATGGGTCATTGGGATGA
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Coding sequence (CDS) from alignment at scaffold_18:577118..577645-

>mRNA_6735 ID=mRNA_6735|Name=jgi.p|Nanoce1779_2|623761|organism=Nannochloropsis oceanica|type=CDS|length=528bp|location=Sequence derived from alignment at scaffold_18:577118..577645- (Nannochloropsis oceanica)
ATGGACTCAGCCCGCCGCCTCCTGGGAGTAGAAGCCCGACCCAAGACATG
GTGTGAACAAATGGAAGAAGACATGTGCTGGTGGTGTCCTTCCTTGACTT
GGCAACATCGCATTTTTGGCTGCCTCTGCTGTTTCGTTCTGGGTCTCATC
CTCGAGGTGGGCTCGTTCTTCCGGTTCACCAAGCTCCTGACGGGCAGTCC
CGGGCCTTTCGCCGTCATGTACACCCTAGGAAATCTCATTTCCCTCGCAG
GGTCGTGCTTCTTATCTGGGCCATTTGCACAGGCGAAAAGCATGTTCCAT
CCGACTCGGGCCCTGTGTACGGCGGTGTATGTGCTGACGTTGGTGTTGAC
CCTCGCAGTGGCCTTCTCGGATGTACCAGGTCAGGGAGCCTTGTTAGTGA
TCATGATCATTATCCAGTTTATGTCCTTGTGTTACTATGTTTTATCGTAC
ATCCCATTCGCGAGGCAGATGGTGTGGCAGACGTGCGGGAGCTGCTTGGG
GCTGGGGCATGATGGGTCATTGGGATGA
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Synonyms
Publications