jgi.p|Nanoce1779_2|126058, mRNA_6734 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|126058
Unique Name	mRNA_6734
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1883
Alignment location	scaffold_18:574082..575964 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	126144
Track	FilteredModels2
ProteinId	126058

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:574082..575964 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|126058	gene_6734	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|126058	mRNA_6734-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6734	CDS_6734	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:574082..575964+
coding sequence from alignment at scaffold_18:574082..575964+

mRNA sequence

>mRNA_6734 ID=mRNA_6734|Name=jgi.p|Nanoce1779_2|126058|organism=Nannochloropsis oceanica|type=mRNA|length=1883bp
CTATCCTACGTATACGATATAGTCAAGCATCGTCATCCTGCCTGCGTCAA
GGCACCTCTCTTTCTCAATCGCTCACGGCGACCGTAACAGATCGATCCAA
TCACCCTCCCAAAAGGACTTCAATACCCCCACCCTCCACAAATATTGACA
GGCATGGCTCCCAGCGTGTCACGACCAAGACCACCGGCTCTGGTCTCACT
CTCAGTCATGTTCCTGGCCCTCTCCTCCGGCCCCATAAGAGTGAAGGCCT
CCCGCAAGCCCAGCAGCGGCAGTAAAGAGGACAGAAAAAAAGCACGAGCC
GCGCCCACCCCCCAACAGAAGGAGCAGGCACCACCACCATCAGCGGAAAA
AATCAAATTCAAGCTCGCAGACTTTCTTGATCCATACGGGGAATGGGGAG
AAGACGAGAAAGGAAGGGAGGGCAGTGGTCAGTATGGTCCGGGGACCGCG
GAAGGGACGTTCGTGATGATGGAGAGTGGGAAGATGATGGAGGACTGGGA
GGAGCTGATGCGGATGGAGCCCCCCAAGCCGTTGCGAGAGTACATGGACT
GCTTGACCCTTTCTCCGTTTGGCTTGCCACCACCTTCCACCGCTGACTAT
TTGGAAAGAGAAGAAGAAAAAGAAGTAGGAGGAGGAGGAGGAGGAGGAGA
AGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGTGAGCCTGTCTACCTTG
TGGTGGACGACGCCCCCACTGGCCGTGTTACACTCGATGTGGACTGCCTT
CTTCATGCTATCCCTGAGCTCCCTGCCCCCGCTTCCTCCTCCTTCTCTTC
CTTCCCTTCCTTCTCTGCCTCCCAACCCTTCCCTCGCACGGCCACTGAGC
GTTTCCCCTTCCTCCTCGACCCCAGCCTATACACCTGTACTCCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCTTCCTTCTCTTCCGCCTCCAGCCCCAC
CACCATCACCTGCTTCGGGCGCGCCGCCCCCGTCCTCCTCGAAGCCGCCT
TCACCCGTTTGGACATTCATCGCTCCTCCTCCTCCTCGCGCTCCTCCGGC
CCTTCCCGATGGCAACACCACCAAGCCAGAAATGACTGGGAGGTAGGAGG
AGAAGAGGATTACGACAGTGCGGTTCATACCTACAGCAATGCGCAGTTGG
ACATGCAGGATGATTTTGCCGACCTCTGCGCCTTTTACCCGTCAATGAAG
GATGCGGAGACGTGCCTCGATCTTCTGAGTGGATGGGCCGAGTTTTCTCA
AGACCATCCTCCTCCTCCTCCTCCTTCCTCCTCTTCTCTATCGCAGCAGC
AACGGATAAAGGGTGGGGAAGGGAATAAGAAGAAGAAGGAGAAGGACAAG
AAGAAGAGGAGGGATCTAGATTGGATGGCAGAGGAGGGGGGGGAGGAGGA
GGTAAGGGAGGCATGGAGGGACGACGTCCTCCACTGGCTGTACATGGAGG
AAAATGATTTCTTTTCAGGTAAGACGGAGGGGCCGAGGGACGGAGAGAGT
GAGGGAGGACAGGGGGAGGAAAATATTGAAACGAAAAGAGAGTCTTCACT
TACCCTTCTCCTCCCTCATATCTATATATATATGTACACTCATTATTCCC
CTCCCTCTGTCTCCCTCTTTCCTTCCATACGTAGGAAAACTCTACCAGGA
AGTGGATACCGCGCGAGAGGACGACGCCCGACGCATGGCCAATGGGGAGC
CTTCCTACTACGAGGAGGTATATGGGAAGAAAGAGAGGGAGGAGGAGGAG
GAAGGGTGGGAAAGCGTGGAGGAGGTGGAGGGAGAGTGGGAGGATGAGGA
TGAGGATGAGAATGATGACGACGATGATGTTTGGGACTGGAGAGGGCTTG
AGGGGGCGGGTGTGAAGAGGGGGGAGGAGGGGG

protein sequence of jgi.p|Nanoce1779_2|126058

>mRNA_6734-protein ID=mRNA_6734-protein|Name=jgi.p|Nanoce1779_2|126058|organism=Nannochloropsis oceanica|type=polypeptide|length=548bp
MAPSVSRPRPPALVSLSVMFLALSSGPIRVKASRKPSSGSKEDRKKARAA
PTPQQKEQAPPPSAEKIKFKLADFLDPYGEWGEDEKGREGSGQYGPGTAE
GTFVMMESGKMMEDWEELMRMEPPKPLREYMDCLTLSPFGLPPPSTADYL
EREEEKEVGGGGGGGEGGGGGEGGGGGEPVYLVVDDAPTGRVTLDVDCLL
HAIPELPAPASSSFSSFPSFSASQPFPRTATERFPFLLDPSLYTCTPSSS
SSSSSSSSFSSASSPTTITCFGRAAPVLLEAAFTRLDIHRSSSSSRSSGP
SRWQHHQARNDWEVGGEEDYDSAVHTYSNAQLDMQDDFADLCAFYPSMKD
AETCLDLLSGWAEFSQDHPPPPPPSSSSLSQQQRIKGGEGNKKKKEKDKK
KRRDLDWMAEEGGEEEVREAWRDDVLHWLYMEENDFFSGKTEGPRDGESE
GGQGEENIETKRESSLTLLLPHIYIYMYTHYSPPSVSLFPSIRRKTLPGS
GYRARGRRPTHGQWGAFLLRGGIWEEREGGGGGRVGKRGGGGGRVGG*

mRNA from alignment at scaffold_18:574082..575964+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6734 ID=mRNA_6734|Name=jgi.p|Nanoce1779_2|126058|organism=Nannochloropsis oceanica|type=mRNA|length=1883bp|location=Sequence derived from alignment at scaffold_18:574082..575964+ (Nannochloropsis oceanica)
CTATCCTACGTATACGATATAGTCAAGCATCGTCATCCTGCCTGCGTCAA
GGCACCTCTCTTTCTCAATCGCTCACGGCGACCGTAACAGATCGATCCAA
TCACCCTCCCAAAAGGACTTCAATACCCCCACCCTCCACAAATATTGACA
GGCATGGCTCCCAGCGTGTCACGACCAAGACCACCGGCTCTGGTCTCACT
CTCAGTCATGTTCCTGGCCCTCTCCTCCGGCCCCATAAGAGTGAAGGCCT
CCCGCAAGCCCAGCAGCGGCAGTAAAGAGGACAGAAAAAAAGCACGAGCC
GCGCCCACCCCCCAACAGAAGGAGCAGGCACCACCACCATCAGCGGAAAA
AATCAAATTCAAGCTCGCAGACTTTCTTGATCCATACGGGGAATGGGGAG
AAGACGAGAAAGGAAGGGAGGGCAGTGGTCAGTATGGTCCGGGGACCGCG
GAAGGGACGTTCGTGATGATGGAGAGTGGGAAGATGATGGAGGACTGGGA
GGAGCTGATGCGGATGGAGCCCCCCAAGCCGTTGCGAGAGTACATGGACT
GCTTGACCCTTTCTCCGTTTGGCTTGCCACCACCTTCCACCGCTGACTAT
TTGGAAAGAGAAGAAGAAAAAGAAGTAGGAGGAGGAGGAGGAGGAGGAGA
AGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGTGAGCCTGTCTACCTTG
TGGTGGACGACGCCCCCACTGGCCGTGTTACACTCGATGTGGACTGCCTT
CTTCATGCTATCCCTGAGCTCCCTGCCCCCGCTTCCTCCTCCTTCTCTTC
CTTCCCTTCCTTCTCTGCCTCCCAACCCTTCCCTCGCACGGCCACTGAGC
GTTTCCCCTTCCTCCTCGACCCCAGCCTATACACCTGTACTCCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCTTCCTTCTCTTCCGCCTCCAGCCCCAC
CACCATCACCTGCTTCGGGCGCGCCGCCCCCGTCCTCCTCGAAGCCGCCT
TCACCCGTTTGGACATTCATCGCTCCTCCTCCTCCTCGCGCTCCTCCGGC
CCTTCCCGATGGCAACACCACCAAGCCAGAAATGACTGGGAGGTAGGAGG
AGAAGAGGATTACGACAGTGCGGTTCATACCTACAGCAATGCGCAGTTGG
ACATGCAGGATGATTTTGCCGACCTCTGCGCCTTTTACCCGTCAATGAAG
GATGCGGAGACGTGCCTCGATCTTCTGAGTGGATGGGCCGAGTTTTCTCA
AGACCATCCTCCTCCTCCTCCTCCTTCCTCCTCTTCTCTATCGCAGCAGC
AACGGATAAAGGGTGGGGAAGGGAATAAGAAGAAGAAGGAGAAGGACAAG
AAGAAGAGGAGGGATCTAGATTGGATGGCAGAGGAGGGGGGGGAGGAGGA
GGTAAGGGAGGCATGGAGGGACGACGTCCTCCACTGGCTGTACATGGAGG
AAAATGATTTCTTTTCAGGTAAGACGGAGGGGCCGAGGGACGGAGAGAGT
GAGGGAGGACAGGGGGAGGAAAATATTGAAACGAAAAGAGAGTCTTCACT
TACCCTTCTCCTCCCTCATATCTATATATATATGTACACTCATTATTCCC
CTCCCTCTGTCTCCCTCTTTCCTTCCATACGTAGGAAAACTCTACCAGGA
AGTGGATACCGCGCGAGAGGACGACGCCCGACGCATGGCCAATGGGGAGC
CTTCCTACTACGAGGAGGTATATGGGAAGAAAGAGAGGGAGGAGGAGGAG
GAAGGGTGGGAAAGCGTGGAGGAGGTGGAGGGAGAGTGGGAGGATGAGGA
TGAGGATGAGAATGATGACGACGATGATGTTTGGGACTGGAGAGGGCTTG
AGGGGGCGGGTGTGAAGAGGGGGGAGGAGGGGG

Coding sequence (CDS) from alignment at scaffold_18:574082..575964+

>mRNA_6734 ID=mRNA_6734|Name=jgi.p|Nanoce1779_2|126058|organism=Nannochloropsis oceanica|type=CDS|length=1644bp|location=Sequence derived from alignment at scaffold_18:574082..575964+ (Nannochloropsis oceanica)
ATGGCTCCCAGCGTGTCACGACCAAGACCACCGGCTCTGGTCTCACTCTC
AGTCATGTTCCTGGCCCTCTCCTCCGGCCCCATAAGAGTGAAGGCCTCCC
GCAAGCCCAGCAGCGGCAGTAAAGAGGACAGAAAAAAAGCACGAGCCGCG
CCCACCCCCCAACAGAAGGAGCAGGCACCACCACCATCAGCGGAAAAAAT
CAAATTCAAGCTCGCAGACTTTCTTGATCCATACGGGGAATGGGGAGAAG
ACGAGAAAGGAAGGGAGGGCAGTGGTCAGTATGGTCCGGGGACCGCGGAA
GGGACGTTCGTGATGATGGAGAGTGGGAAGATGATGGAGGACTGGGAGGA
GCTGATGCGGATGGAGCCCCCCAAGCCGTTGCGAGAGTACATGGACTGCT
TGACCCTTTCTCCGTTTGGCTTGCCACCACCTTCCACCGCTGACTATTTG
GAAAGAGAAGAAGAAAAAGAAGTAGGAGGAGGAGGAGGAGGAGGAGAAGG
AGGAGGAGGAGGAGAAGGAGGAGGAGGAGGTGAGCCTGTCTACCTTGTGG
TGGACGACGCCCCCACTGGCCGTGTTACACTCGATGTGGACTGCCTTCTT
CATGCTATCCCTGAGCTCCCTGCCCCCGCTTCCTCCTCCTTCTCTTCCTT
CCCTTCCTTCTCTGCCTCCCAACCCTTCCCTCGCACGGCCACTGAGCGTT
TCCCCTTCCTCCTCGACCCCAGCCTATACACCTGTACTCCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCTTCCTTCTCTTCCGCCTCCAGCCCCACCAC
CATCACCTGCTTCGGGCGCGCCGCCCCCGTCCTCCTCGAAGCCGCCTTCA
CCCGTTTGGACATTCATCGCTCCTCCTCCTCCTCGCGCTCCTCCGGCCCT
TCCCGATGGCAACACCACCAAGCCAGAAATGACTGGGAGGTAGGAGGAGA
AGAGGATTACGACAGTGCGGTTCATACCTACAGCAATGCGCAGTTGGACA
TGCAGGATGATTTTGCCGACCTCTGCGCCTTTTACCCGTCAATGAAGGAT
GCGGAGACGTGCCTCGATCTTCTGAGTGGATGGGCCGAGTTTTCTCAAGA
CCATCCTCCTCCTCCTCCTCCTTCCTCCTCTTCTCTATCGCAGCAGCAAC
GGATAAAGGGTGGGGAAGGGAATAAGAAGAAGAAGGAGAAGGACAAGAAG
AAGAGGAGGGATCTAGATTGGATGGCAGAGGAGGGGGGGGAGGAGGAGGT
AAGGGAGGCATGGAGGGACGACGTCCTCCACTGGCTGTACATGGAGGAAA
ATGATTTCTTTTCAGGTAAGACGGAGGGGCCGAGGGACGGAGAGAGTGAG
GGAGGACAGGGGGAGGAAAATATTGAAACGAAAAGAGAGTCTTCACTTAC
CCTTCTCCTCCCTCATATCTATATATATATGTACACTCATTATTCCCCTC
CCTCTGTCTCCCTCTTTCCTTCCATACGTAGGAAAACTCTACCAGGAAGT
GGATACCGCGCGAGAGGACGACGCCCGACGCATGGCCAATGGGGAGCCTT
CCTACTACGAGGAGGTATATGGGAAGAAAGAGAGGGAGGAGGAGGAGGAA
GGGTGGGAAAGCGTGGAGGAGGTGGAGGGAGAGTGGGAGGATGA

Synonyms

Publications