jgi.p|Nanoce1779_2|597872, mRNA_6733 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597872
Unique NamemRNA_6733
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1709
Alignment locationscaffold_18:572012..573952 -

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Properties
Property NameValue
TranscriptId597958
TrackFilteredModels2
ProteinId597872
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:572012..573952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597872gene_6733Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597872mRNA_6733-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6733CDS_6733Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6733 ID=mRNA_6733|Name=jgi.p|Nanoce1779_2|597872|organism=Nannochloropsis oceanica|type=mRNA|length=1709bp
ACAGGCTTGCCACCGGTGCTGGCAATGGCGGCAACTATAAGATACGTCCG
TCATCCCTGCCTCGTTCCCCTGCTTGTCCTCCTCAACCTTCTCTTGGCCA
GCACACCCTGTGCCTTTTCCTTCATCCCCTCCCTTTCCCACCTAAAGCCG
CTTCGTTCTTCGCCGCTTTCATCCTCTCCTCCCCGCGACCGCCGCCAGCA
CGGCGTCCTCCAAATGCGCACCAAGCCGTCTGGGGAGGAACGCGAGCGTG
GCGTTGCCGAAAAAGAGCTCCGGGAAAAGCAAAGCCAAGTGTTGTTATCG
CAACGCATTCAGCACATTCGTCGCTTGCGGGCCTCGAGACGCGAGGACAT
AATGGAAACTGAATGGTATAATCCCCAAAAACCCAACCCGGATTGGCGGA
ACGCCGCGGAAGGAAGCAAGGGTAGAGAAGGAGGGGAGGCAGCTGCGATG
GAGGAATTGAGTGCCATGTTGGAATTCAAGGTGGAGCGTGGCTCGGGGGG
GAGTGTGGTGAATGTCTACGCCAAGGAGGAGGAAGCTGCGAAAGCTCAAG
CGCAAAGGATGGGAGGAGGCAATTTCCCAGCAGCGGTAGCGGCAGCGGCG
GCAGCGGGTGTGGTTGTGCCGTTGTCCTCTCCACTTCCTTATTCTTTTTC
TTCGCCTTCGTCATCAGTGCCAGGAGGGGAGCAGCAGCATCAACAACAGC
AGCAGCAAGAGCATCAGCAGCCGGAGGTGTTGATAGGCAAGGCTTTGAAG
CGGCACGATTACGCGCCTCTTTCGGCTTGGCGATGCCTCCAGCGGTCTGA
AAATGCTGGAGAAGGACAAGTGCAAGTCACGTACAACAGTGTGCGGGGCA
CCAGCAAGTACGTCATCGTCCTGGTCGACCCCAGCCAATCCGCACTCACG
CTCACAGAAGGACTCAAACGCATGCGGATCATCCCTCCCTCTCTCGCCGC
CGTCGTGGGTGTGACAATTCTACCTCCTCAGGACGCGCAGCGCCTGGCCA
AAAAAAGCGGGTTGCCACCCTTCTCCTCCCCCTCCTCCTCCTCCTCTCCC
TCCTCCTCTCCCTCCCTCCTCAGCGACCCTTCTCATCAATGGATGGATGC
CCATGGCATTCCTCGCTTGTCGATGCGTCCGCTTTTCTTGGTGTTGGATG
GCGCGAAAGGCACCGTGCTGCTGGTGGTCCGTGACCCTGTTGCGGGGGCG
TTGAACGACTTGGTAATGGAGGTAATAGGGGACTGGCGAGGTAGGGGATG
AGGAGTAAGGTAGAGCCCACACGACGGCGATGCCTCGAGCTCGTTCAGTC
GCTGCCGACACTATTGTACACGTCTTCGATCCCTTAACCCTGGATGGGCC
CTAAATTGTAATCAACTAAAGCAAAGAACAAAATGAAAGAAATAATACTT
GGGAAAAGAAGAAAAAGGGAAGTGCGTGATGGAAAAAAGAATTGTGTCGA
GTACCTTGGGCACACAGAGGAGGATAAGTTAAAAGTCCCCTGGTTATTTT
TCTGACTCCTCTGATTTGTTAAGGACACCAAAAGTTGAGGCGCTGGAGGG
GGAGGGAAGGGTAGTTAAACGTCAGCCTTTTTTATGGGGGTTCTCTTCCA
AAATAAGACCCAGATGAACCATCAGTGCACAGCTAAGCACGTGTAGGCGG
GTTTCTTTTGTTTAACCAATGGACGTATCACATTACTCTCGTTTTGGCCC
TGATATCTC
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protein sequence of jgi.p|Nanoce1779_2|597872

>mRNA_6733-protein ID=mRNA_6733-protein|Name=jgi.p|Nanoce1779_2|597872|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MAATIRYVRHPCLVPLLVLLNLLLASTPCAFSFIPSLSHLKPLRSSPLSS
SPPRDRRQHGVLQMRTKPSGEERERGVAEKELREKQSQVLLSQRIQHIRR
LRASRREDIMETEWYNPQKPNPDWRNAAEGSKGREGGEAAAMEELSAMLE
FKVERGSGGSVVNVYAKEEEAAKAQAQRMGGGNFPAAVAAAAAAGVVVPL
SSPLPYSFSSPSSSVPGGEQQHQQQQQQEHQQPEVLIGKALKRHDYAPLS
AWRCLQRSENAGEGQVQVTYNSVRGTSKYVIVLVDPSQSALTLTEGLKRM
RIIPPSLAAVVGVTILPPQDAQRLAKKSGLPPFSSPSSSSSPSSSPSLLS
DPSHQWMDAHGIPRLSMRPLFLVLDGAKGTVLLVVRDPVAGALNDLVMEV
IGDWRGRG*
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mRNA from alignment at scaffold_18:572012..573952-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6733 ID=mRNA_6733|Name=jgi.p|Nanoce1779_2|597872|organism=Nannochloropsis oceanica|type=mRNA|length=1941bp|location=Sequence derived from alignment at scaffold_18:572012..573952- (Nannochloropsis oceanica)
ACAGGCTTGCCACCGGTGCTGGCAATGGCGGCAACTATAAGATACGTCCG
TCATCCCTGCCTCGTTCCCCTGCTTGTCCTCCTCAACCTTCTCTTGGCCA
GCACACCCTGTGCCTTTTCCTTCATCCCCTCCCTTTCCCACCTAAAGCCG
CTTCGTTCTTCGCCGCTTTCATCCTCTCCTCCCCGCGACCGCCGCCAGCA
CGGCGTCCTCCAAATGCGCACCAAGCCGTCTGGGGAGGAACGCGAGCGTG
GCGTTGCCGAAAAAGAGCTCCGGGAAAAGCAAAGCCAAGTGTTGTTATCG
CAACGCATTCAGCACATTCGTCGCTTGCGGGCCTCGAGACGCGAGGACAT
AATGGAAACTGAATGGTATAATCCCCAAAAACCCAACCCGGATTGGCGGA
ACGCCGCGGAAGGAAGCAAGGGTAGAGAAGGAGGGGAGGCAGCTGCGATG
GAGGAATTGAGTGCCATGTTGGAATTCAAGGTGGAGCGTGGCTCGGGGGG
GAGTGTGGTGAATGTCTACGCCAAGGAGGAGGAAGCTGCGAAAGCTCAAG
CGCAAAGGATGGGAGGAGGCAATTTCCCAGCAGCGGTAGCGGCAGCGGCG
GCAGCGGGTGTGGTTGTGCCGTTGTCCTCTCCACTTCCTTATTCTTTTTC
TTCGCCTTCGTCATCAGTGCCAGGAGGGGAGCAGCAGCATCAACAACAGC
AGCAGCAAGAGCATCAGCAGCCGGAGGTGTTGATAGGCAAGGCTTTGAAG
CGGCACGATTACGCGCCTCTTTCGGCTTGGCGATGCCTCCAGCGGTCTGA
AAATGCTGGAGAAGGACAAGTGCAAGTCACGTACAACAGTGTGCGGGTGA
GATATATGGAGTGGCAAGGGAGGGATGCAGGGAGGGAGGGGGGGAGAGTG
TCGAGAAGGAGGTCATGAGATGCTAGCGCGCTTTGAATGGTGATGGTATA
TTGTAGCACACGAATGTAGATCATACATATATCTTTGAATAGATACTCTT
CATGTCTCCTCCGCCCGCATCTTACCCTTCCTCAATTAGTCTTTCCCTGC
ATCCCTCCTTCTTTACACCGCCGCACAGGGCACCAGCAAGTACGTCATCG
TCCTGGTCGACCCCAGCCAATCCGCACTCACGCTCACAGAAGGACTCAAA
CGCATGCGGATCATCCCTCCCTCTCTCGCCGCCGTCGTGGGTGTGACAAT
TCTACCTCCTCAGGACGCGCAGCGCCTGGCCAAAAAAAGCGGGTTGCCAC
CCTTCTCCTCCCCCTCCTCCTCCTCCTCTCCCTCCTCCTCTCCCTCCCTC
CTCAGCGACCCTTCTCATCAATGGATGGATGCCCATGGCATTCCTCGCTT
GTCGATGCGTCCGCTTTTCTTGGTGTTGGATGGCGCGAAAGGCACCGTGC
TGCTGGTGGTCCGTGACCCTGTTGCGGGGGCGTTGAACGACTTGGTAATG
GAGGTAATAGGGGACTGGCGAGGTAGGGGATGAGGAGTAAGGTAGAGCCC
ACACGACGGCGATGCCTCGAGCTCGTTCAGTCGCTGCCGACACTATTGTA
CACGTCTTCGATCCCTTAACCCTGGATGGGCCCTAAATTGTAATCAACTA
AAGCAAAGAACAAAATGAAAGAAATAATACTTGGGAAAAGAAGAAAAAGG
GAAGTGCGTGATGGAAAAAAGAATTGTGTCGAGTACCTTGGGCACACAGA
GGAGGATAAGTTAAAAGTCCCCTGGTTATTTTTCTGACTCCTCTGATTTG
TTAAGGACACCAAAAGTTGAGGCGCTGGAGGGGGAGGGAAGGGTAGTTAA
ACGTCAGCCTTTTTTATGGGGGTTCTCTTCCAAAATAAGACCCAGATGAA
CCATCAGTGCACAGCTAAGCACGTGTAGGCGGGTTTCTTTTGTTTAACCA
ATGGACGTATCACATTACTCTCGTTTTGGCCCTGATATCTC
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Coding sequence (CDS) from alignment at scaffold_18:572012..573952-

>mRNA_6733 ID=mRNA_6733|Name=jgi.p|Nanoce1779_2|597872|organism=Nannochloropsis oceanica|type=CDS|length=2454bp|location=Sequence derived from alignment at scaffold_18:572012..573952- (Nannochloropsis oceanica)
GGCACCAGCAAGTACGTCATCGTCCTGGTCGACCCCAGCCAATCCGCACT
CACGCTCACAGAAGGACTCAAACGCATGCGGATCATCCCTCCCTCTCTCG
CCGCCGTCGTGGGTGTGACAATTCTACCTCCTCAGGACGCGCAGCGCCTG
GCCAAAAAAAGCGGGTTGCCACCCTTCTCCTCCCCCTCCTCCTCCTCCTC
TCCCTCCTCCTCTCCCTCCCTCCTCAGCGACCCTTCTCATCAATGGATGG
ATGCCCATGGCATTCCTCGCTTGTCGATGCGTCCGCTTTTCTTGGTGTTG
GATGGCGCGAAAGGCACCGTGCTGCTGGTGGTCCGTGACCCTGTTGCGGG
GGCGTTGAACGACTTGGTAATGGAGGTAATAGGGGACTGGCGAGGTAGGG
GATGAATGGCGGCAACTATAAGATACGTCCGTCATCCCTGCCTCGTTCCC
CTGCTTGTCCTCCTCAACCTTCTCTTGGCCAGCACACCCTGTGCCTTTTC
CTTCATCCCCTCCCTTTCCCACCTAAAGCCGCTTCGTTCTTCGCCGCTTT
CATCCTCTCCTCCCCGCGACCGCCGCCAGCACGGCGTCCTCCAAATGCGC
ACCAAGCCGTCTGGGGAGGAACGCGAGCGTGGCGTTGCCGAAAAAGAGCT
CCGGGAAAAGCAAAGCCAAGTGTTGTTATCGCAACGCATTCAGCACATTC
GTCGCTTGCGGGCCTCGAGACGCGAGGACATAATGGAAACTGAATGGTAT
AATCCCCAAAAACCCAACCCGGATTGGCGGAACGCCGCGGAAGGAAGCAA
GGGTAGAGAAGGAGGGGAGGCAGCTGCGATGGAGGAATTGAGTGCCATGT
TGGAATTCAAGGTGGAGCGTGGCTCGGGGGGGAGTGTGGTGAATGTCTAC
GCCAAGGAGGAGGAAGCTGCGAAAGCTCAAGCGCAAAGGATGGGAGGAGG
CAATTTCCCAGCAGCGGTAGCGGCAGCGGCGGCAGCGGGTGTGGTTGTGC
CGTTGTCCTCTCCACTTCCTTATTCTTTTTCTTCGCCTTCGTCATCAGTG
CCAGGAGGGGAGCAGCAGCATCAACAACAGCAGCAGCAAGAGCATCAGCA
GCCGGAGGTGTTGATAGGCAAGGCTTTGAAGCGGCACGATTACGCGCCTC
TTTCGGCTTGGCGATGCCTCCAGCGGTCTGAAAATGCTGGAGAAGGACAA
GTGCAAGTCACGTACAACAGTGTGCGGGGCACCAGCAAGTACGTCATCGT
CCTGGTCGACCCCAGCCAATCCGCACTCACGCTCACAGAAGGACTCAAAC
GCATGCGGATCATCCCTCCCTCTCTCGCCGCCGTCGTGGGTGTGACAATT
CTACCTCCTCAGGACGCGCAGCGCCTGGCCAAAAAAAGCGGGTTGCCACC
CTTCTCCTCCCCCTCCTCCTCCTCCTCTCCCTCCTCCTCTCCCTCCCTCC
TCAGCGACCCTTCTCATCAATGGATGGATGCCCATGGCATTCCTCGCTTG
TCGATGCGTCCGCTTTTCTTGGTGTTGGATGGCGCGAAAGGCACCGTGCT
GCTGGTGGTCCGTGACCCTGTTGCGGGGGCGTTGAACGACTTGGTAATGG
AGGTAATAGGGGACTGGCGAGGTAGGGGATGAATGGCGGCAACTATAAGA
TACGTCCGTCATCCCTGCCTCGTTCCCCTGCTTGTCCTCCTCAACCTTCT
CTTGGCCAGCACACCCTGTGCCTTTTCCTTCATCCCCTCCCTTTCCCACC
TAAAGCCGCTTCGTTCTTCGCCGCTTTCATCCTCTCCTCCCCGCGACCGC
CGCCAGCACGGCGTCCTCCAAATGCGCACCAAGCCGTCTGGGGAGGAACG
CGAGCGTGGCGTTGCCGAAAAAGAGCTCCGGGAAAAGCAAAGCCAAGTGT
TGTTATCGCAACGCATTCAGCACATTCGTCGCTTGCGGGCCTCGAGACGC
GAGGACATAATGGAAACTGAATGGTATAATCCCCAAAAACCCAACCCGGA
TTGGCGGAACGCCGCGGAAGGAAGCAAGGGTAGAGAAGGAGGGGAGGCAG
CTGCGATGGAGGAATTGAGTGCCATGTTGGAATTCAAGGTGGAGCGTGGC
TCGGGGGGGAGTGTGGTGAATGTCTACGCCAAGGAGGAGGAAGCTGCGAA
AGCTCAAGCGCAAAGGATGGGAGGAGGCAATTTCCCAGCAGCGGTAGCGG
CAGCGGCGGCAGCGGGTGTGGTTGTGCCGTTGTCCTCTCCACTTCCTTAT
TCTTTTTCTTCGCCTTCGTCATCAGTGCCAGGAGGGGAGCAGCAGCATCA
ACAACAGCAGCAGCAAGAGCATCAGCAGCCGGAGGTGTTGATAGGCAAGG
CTTTGAAGCGGCACGATTACGCGCCTCTTTCGGCTTGGCGATGCCTCCAG
CGGTCTGAAAATGCTGGAGAAGGACAAGTGCAAGTCACGTACAACAGTGT
GCGG
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Synonyms
Publications