jgi.p|Nanoce1779_2|597865, mRNA_6732 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597865
Unique NamemRNA_6732
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1181
Alignment locationscaffold_18:569009..570817 -

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Properties
Property NameValue
TranscriptId597951
TrackFilteredModels2
ProteinId597865
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:569009..570817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597865gene_6732Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597865mRNA_6732-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6732CDS_6732Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6732 ID=mRNA_6732|Name=jgi.p|Nanoce1779_2|597865|organism=Nannochloropsis oceanica|type=mRNA|length=1181bp
GGTGATAGGTAGGCGGGAGAGTGGAAAGGAGGGAGGAAGAGAGGGACGGC
GAGGGAGGGCTTAGATGAGTATTGATGCACAGATAAAGGGATTCTTAAAA
TACTCACTCACACACTCCCTCCCGCTCCTTCCCCCTCTCGCTCGCCTCCT
CCATACAAGCCTCTTCTTCCATTTCTCGGGCCACGGAGGGTCGGTCCGGG
ATTTAAACGGCGACGAGGCCGACGGGATGGACGAGACGATCCTTCCCATT
GACCATGATCGGGCGGGACAGATCATAGACGATGAAATCCACGACGTCAT
GGTGCGGCCCCTCCAAAAAGGAGTGCGCTTGACGGCCATCTTCGACTCCT
GTCACAGTGGCTCAGTGATGGATTTGCCCTTCTCCTACAAAGTCGATGGC
TCCCTGCAAATTATTCAAGTTGACAACACCGCCGTGGTCGTGAACGGCCT
CGCCAACGTGGGCCTCCACCTCCTGACAGGCAACAAGACGGCCGCGCTCT
TTTCGGGGTTGGAGGCCGTGGGAAAATTGATCATGGGACCCAAGAATGAC
GAGGCGGCCCGTCGACGGACAGAGCAGAATAATCAGAGCGAGGCCGACGT
GATCCAATTCGGGGGTTGTCGGGATGATCAGACCAGTGCCGACGCCCATA
TCGACGGGCAGGCGAGTGGGGCCATGTCGTGGGCGTTTATTAAGGCCTTG
AGCCAGAGTCCGCACCAGCAATACGCGGAATTACTGAAGAATATGAGACA
ATTGTTGAAGTATAGGTATACCCAGATTCCCCAGATTTCGACCAGCCATA
AGGTTGATTTGTTTACGCCCTTCAATATGTAATTCGACGAGGGGCGGGAG
GGAGGGAAGGAGGGGAGGGGAATCGAGGTTTCTTGCAGGAGGAGGGGCGT
TGCAGCATGGGTGGCGTAGCGTACATAAGGTCCGTAGATTGACACAGGGG
TTGAATAAAGGAGACGAATACATGAGTGGTATGCATTCGTGCGTGTAGTA
AAGAACATTGAGAAACTTGTTTTAGTGTGTCCTTGTCCTAGCGTTCTGGA
GGGGAAATCATAGAGTAGGGGCGGAGAAATGATGTTGATAATTGCATGTG
CACAAAAGAGAGGGGTAGAAAAAGAAAATTACAGAAACGGGGATATACTC
ATGTCTGCTAAATACTAACGTCTCTTTGCAA
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protein sequence of jgi.p|Nanoce1779_2|597865

>mRNA_6732-protein ID=mRNA_6732-protein|Name=jgi.p|Nanoce1779_2|597865|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MSIDAQIKGFLKYSLTHSLPLLPPLARLLHTSLFFHFSGHGGSVRDLNGD
EADGMDETILPIDHDRAGQIIDDEIHDVMVRPLQKGVRLTAIFDSCHSGS
VMDLPFSYKVDGSLQIIQVDNTAVVVNGLANVGLHLLTGNKTAALFSGLE
AVGKLIMGPKNDEAARRRTEQNNQSEADVIQFGGCRDDQTSADAHIDGQA
SGAMSWAFIKALSQSPHQQYAELLKNMRQLLKYRYTQIPQISTSHKVDLF
TPFNM*
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mRNA from alignment at scaffold_18:569009..570817-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6732 ID=mRNA_6732|Name=jgi.p|Nanoce1779_2|597865|organism=Nannochloropsis oceanica|type=mRNA|length=1809bp|location=Sequence derived from alignment at scaffold_18:569009..570817- (Nannochloropsis oceanica)
GGTGATAGGTAGGCGGGAGAGTGGAAAGGAGGGAGGAAGAGAGGGACGGC
GAGGGAGGGCTTAGATGAGTATTGATGCACAGATAAAGGGATTCTTAAAA
TACTCACTCACACACTCCCTCCCGCTCCTTCCCCCTCTCGCTCGCCTCCT
CCATACAAGCCTCTTCTTCCATTTCTCGGGCCACGGAGGGTCGGTCCGGG
ATTTAAACGGCGACGAGGCCGACGGGATGGACGAGACGATCCTTCCCATT
GACCATGATCGGGCGGGACAGATCATAGACGATGAAATCCACGACGTCAT
GGTGCGGCCCCTCCAAAAAGGAGTGCGCTTGACGGCCATCTTCGACTCCT
GTCACAGGTACGTGTCTCTCCCTCCCTCACTTCCCTCCCTCCCTCCTTCC
TTCCCGCCTTCCCGCTCTCGGATCGTCTTCCTTCGATCCTTTCTTCGTTG
TCGTCATCCGCCGTTGGATTTTTTTTCCTGAGTTCGCAAGGACTTCAATT
CCTCCCTCCCTCCCTCCCTGCCTTCATCCATCCATTCCTCCCTCCCTGCT
TCCTTCCTTCCTGCAGTGGCTCAGTGATGGATTTGCCCTTCTCCTACAAA
GTCGATGGCTCCCTGCAAATTATTCAAGTTGACAACACCGCCGTGGTAAG
CAATGGGGGAGGGAGGGGGGGCGGGCAGGGATGTGCAGCTGTACGATTGT
CAAGTGCGTGGTCTTGTTTTCTCACCCTTCATCCACACGTGATGAGATCC
TTCCGAAGGCTCCGATGCTCCCATCAGTCCTCTTGCCTGACCTTACCCCT
CTCTCTTCCTTCCTTGCTCGTAGCACTGACTCTCCCTGCCTGTCTGATCC
TCCTCCCCTTCCATGGATCGTAGTATACCCTCCCCGTCTGATCCTTCCCC
CCTCCTTCCCTATCGTAGTACTGACTCTCCCCGTCTGATCCTCCCCCCCT
TCCATGGATCGTAGTATACCCTCCCCGTCTAATCCTTCCCCCCTCCTTCT
CTATCGTAGTACTGACTCTCCCTGCCTGTCTGATCCTCCCCTCCTCCTCC
TTCGCCTCCTTTAGGTCGTGAACGGCCTCGCCAACGTGGGCCTCCACCTC
CTGACAGGCAACAAGACGGCCGCGCTCTTTTCGGGGTTGGAGGCCGTGGG
AAAATTGATCATGGGACCCAAGAATGACGAGGCGGCCCGTCGACGGACAG
AGCAGAATAATCAGAGCGAGGCCGACGTGATCCAATTCGGGGGTTGTCGG
GATGATCAGACCAGTGCCGACGCCCATATCGACGGGCAGGCGAGTGGGGC
CATGTCGTGGGCGTTTATTAAGGCCTTGAGCCAGAGTCCGCACCAGCAAT
ACGCGGAATTACTGAAGAATATGAGACAATTGTTGAAGTATAGGTATACC
CAGATTCCCCAGATTTCGACCAGCCATAAGGTTGATTTGTTTACGCCCTT
CAATATGTAATTCGACGAGGGGCGGGAGGGAGGGAAGGAGGGGAGGGGAA
TCGAGGTTTCTTGCAGGAGGAGGGGCGTTGCAGCATGGGTGGCGTAGCGT
ACATAAGGTCCGTAGATTGACACAGGGGTTGAATAAAGGAGACGAATACA
TGAGTGGTATGCATTCGTGCGTGTAGTAAAGAACATTGAGAAACTTGTTT
TAGTGTGTCCTTGTCCTAGCGTTCTGGAGGGGAAATCATAGAGTAGGGGC
GGAGAAATGATGTTGATAATTGCATGTGCACAAAAGAGAGGGGTAGAAAA
AGAAAATTACAGAAACGGGGATATACTCATGTCTGCTAAATACTAACGTC
TCTTTGCAA
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Coding sequence (CDS) from alignment at scaffold_18:569009..570817-

>mRNA_6732 ID=mRNA_6732|Name=jgi.p|Nanoce1779_2|597865|organism=Nannochloropsis oceanica|type=CDS|length=2304bp|location=Sequence derived from alignment at scaffold_18:569009..570817- (Nannochloropsis oceanica)
GTCGTGAACGGCCTCGCCAACGTGGGCCTCCACCTCCTGACAGGCAACAA
GACGGCCGCGCTCTTTTCGGGGTTGGAGGCCGTGGGAAAATTGATCATGG
GACCCAAGAATGACGAGGCGGCCCGTCGACGGACAGAGCAGAATAATCAG
AGCGAGGCCGACGTGATCCAATTCGGGGGTTGTCGGGATGATCAGACCAG
TGCCGACGCCCATATCGACGGGCAGGCGAGTGGGGCCATGTCGTGGGCGT
TTATTAAGGCCTTGAGCCAGAGTCCGCACCAGCAATACGCGGAATTACTG
AAGAATATGAGACAATTGTTGAAGTATAGGTATACCCAGATTCCCCAGAT
TTCGACCAGCCATAAGGTTGATTTGTTTACGCCCTTCAATATGTAATGGC
TCAGTGATGGATTTGCCCTTCTCCTACAAAGTCGATGGCTCCCTGCAAAT
TATTCAAGTTGACAACACCGCCGTGATGAGTATTGATGCACAGATAAAGG
GATTCTTAAAATACTCACTCACACACTCCCTCCCGCTCCTTCCCCCTCTC
GCTCGCCTCCTCCATACAAGCCTCTTCTTCCATTTCTCGGGCCACGGAGG
GTCGGTCCGGGATTTAAACGGCGACGAGGCCGACGGGATGGACGAGACGA
TCCTTCCCATTGACCATGATCGGGCGGGACAGATCATAGACGATGAAATC
CACGACGTCATGGTGCGGCCCCTCCAAAAAGGAGTGCGCTTGACGGCCAT
CTTCGACTCCTGTCACAGGTCGTGAACGGCCTCGCCAACGTGGGCCTCCA
CCTCCTGACAGGCAACAAGACGGCCGCGCTCTTTTCGGGGTTGGAGGCCG
TGGGAAAATTGATCATGGGACCCAAGAATGACGAGGCGGCCCGTCGACGG
ACAGAGCAGAATAATCAGAGCGAGGCCGACGTGATCCAATTCGGGGGTTG
TCGGGATGATCAGACCAGTGCCGACGCCCATATCGACGGGCAGGCGAGTG
GGGCCATGTCGTGGGCGTTTATTAAGGCCTTGAGCCAGAGTCCGCACCAG
CAATACGCGGAATTACTGAAGAATATGAGACAATTGTTGAAGTATAGGTA
TACCCAGATTCCCCAGATTTCGACCAGCCATAAGGTTGATTTGTTTACGC
CCTTCAATATGTAATGGCTCAGTGATGGATTTGCCCTTCTCCTACAAAGT
CGATGGCTCCCTGCAAATTATTCAAGTTGACAACACCGCCGTGATGAGTA
TTGATGCACAGATAAAGGGATTCTTAAAATACTCACTCACACACTCCCTC
CCGCTCCTTCCCCCTCTCGCTCGCCTCCTCCATACAAGCCTCTTCTTCCA
TTTCTCGGGCCACGGAGGGTCGGTCCGGGATTTAAACGGCGACGAGGCCG
ACGGGATGGACGAGACGATCCTTCCCATTGACCATGATCGGGCGGGACAG
ATCATAGACGATGAAATCCACGACGTCATGGTGCGGCCCCTCCAAAAAGG
AGTGCGCTTGACGGCCATCTTCGACTCCTGTCACAGGTCGTGAACGGCCT
CGCCAACGTGGGCCTCCACCTCCTGACAGGCAACAAGACGGCCGCGCTCT
TTTCGGGGTTGGAGGCCGTGGGAAAATTGATCATGGGACCCAAGAATGAC
GAGGCGGCCCGTCGACGGACAGAGCAGAATAATCAGAGCGAGGCCGACGT
GATCCAATTCGGGGGTTGTCGGGATGATCAGACCAGTGCCGACGCCCATA
TCGACGGGCAGGCGAGTGGGGCCATGTCGTGGGCGTTTATTAAGGCCTTG
AGCCAGAGTCCGCACCAGCAATACGCGGAATTACTGAAGAATATGAGACA
ATTGTTGAAGTATAGGTATACCCAGATTCCCCAGATTTCGACCAGCCATA
AGGTTGATTTGTTTACGCCCTTCAATATGTAATGGCTCAGTGATGGATTT
GCCCTTCTCCTACAAAGTCGATGGCTCCCTGCAAATTATTCAAGTTGACA
ACACCGCCGTGATGAGTATTGATGCACAGATAAAGGGATTCTTAAAATAC
TCACTCACACACTCCCTCCCGCTCCTTCCCCCTCTCGCTCGCCTCCTCCA
TACAAGCCTCTTCTTCCATTTCTCGGGCCACGGAGGGTCGGTCCGGGATT
TAAACGGCGACGAGGCCGACGGGATGGACGAGACGATCCTTCCCATTGAC
CATGATCGGGCGGGACAGATCATAGACGATGAAATCCACGACGTCATGGT
GCGGCCCCTCCAAAAAGGAGTGCGCTTGACGGCCATCTTCGACTCCTGTC
ACAG
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Synonyms
Publications