jgi.p|Nanoce1779_2|651801, mRNA_6731 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|651801
Unique NamemRNA_6731
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length738
Alignment locationscaffold_18:568037..568774 +

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Properties
Property NameValue
TranscriptId651887
TrackFilteredModels2
ProteinId651801
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:568037..568774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651801gene_6731Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651801mRNA_6731-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6731CDS_6731Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6731 ID=mRNA_6731|Name=jgi.p|Nanoce1779_2|651801|organism=Nannochloropsis oceanica|type=mRNA|length=738bp
ATGCAGCAGCCATCCGTGCAAAAAATAGCGGAGCGCCCCGCCACCTTGAC
GCCCGAGCCCGCAATTTTCTGCATTAAGACATTTATGCCGCATCCGGGTC
ATGAGCAGGATCTGGAAGTTCGACTGAAAGAGCACTGGGATGCGTTGCAC
GCGGCTGGCTTGACGGCACCCAACCAAGAGCCTTTGTTCCTCCGCAGCCG
CGCCGGAAGGGTCTTGGAAGTCTTTGAATGGAAAGATAAAGAATCAATTG
AAGAAGCTCACCGTCGAAGTGAGCTGCACAAAACATGGAAAAATTTATTG
GATATTGCAACAATGGTGCCGCTGGCGTCCTTGGGGGAGAGCAACGAGCC
TTACGCGCATTTCCATGTCCTCATTCCTGGGGTTCTACAGACCACGGGGG
CTATGGCCAAGATTGTTGCGGTCAAACCTCACACTGGAAAATTGAACGAC
CTGGTTGCCAAGCTAAAGAAGCACGACGTGGCGCTGTACAAGGCGGGGTA
TACGACAGAGCGGCCAGTGATGCACATGCGCGGAGAGAAGGAGGGACATT
TGGTGGAGATTGCGGAATGGACATCTTTGGAGAAGGTAAAGGAAGCTCAG
TCGAGCGAAATTGTGCAAGGCCTGTGGAATGACTTTAATGTGTCGGTGGA
GCATAATTGCCCTTTGACTTGCTTGCCTGAGGCAAAGGACCGGTACTCGC
TGTTTCCCGCCATAACCCTCCACACGTTGAGTGAGTGA
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protein sequence of jgi.p|Nanoce1779_2|651801

>mRNA_6731-protein ID=mRNA_6731-protein|Name=jgi.p|Nanoce1779_2|651801|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MQQPSVQKIAERPATLTPEPAIFCIKTFMPHPGHEQDLEVRLKEHWDALH
AAGLTAPNQEPLFLRSRAGRVLEVFEWKDKESIEEAHRRSELHKTWKNLL
DIATMVPLASLGESNEPYAHFHVLIPGVLQTTGAMAKIVAVKPHTGKLND
LVAKLKKHDVALYKAGYTTERPVMHMRGEKEGHLVEIAEWTSLEKVKEAQ
SSEIVQGLWNDFNVSVEHNCPLTCLPEAKDRYSLFPAITLHTLSE*
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mRNA from alignment at scaffold_18:568037..568774+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6731 ID=mRNA_6731|Name=jgi.p|Nanoce1779_2|651801|organism=Nannochloropsis oceanica|type=mRNA|length=738bp|location=Sequence derived from alignment at scaffold_18:568037..568774+ (Nannochloropsis oceanica)
ATGCAGCAGCCATCCGTGCAAAAAATAGCGGAGCGCCCCGCCACCTTGAC
GCCCGAGCCCGCAATTTTCTGCATTAAGACATTTATGCCGCATCCGGGTC
ATGAGCAGGATCTGGAAGTTCGACTGAAAGAGCACTGGGATGCGTTGCAC
GCGGCTGGCTTGACGGCACCCAACCAAGAGCCTTTGTTCCTCCGCAGCCG
CGCCGGAAGGGTCTTGGAAGTCTTTGAATGGAAAGATAAAGAATCAATTG
AAGAAGCTCACCGTCGAAGTGAGCTGCACAAAACATGGAAAAATTTATTG
GATATTGCAACAATGGTGCCGCTGGCGTCCTTGGGGGAGAGCAACGAGCC
TTACGCGCATTTCCATGTCCTCATTCCTGGGGTTCTACAGACCACGGGGG
CTATGGCCAAGATTGTTGCGGTCAAACCTCACACTGGAAAATTGAACGAC
CTGGTTGCCAAGCTAAAGAAGCACGACGTGGCGCTGTACAAGGCGGGGTA
TACGACAGAGCGGCCAGTGATGCACATGCGCGGAGAGAAGGAGGGACATT
TGGTGGAGATTGCGGAATGGACATCTTTGGAGAAGGTAAAGGAAGCTCAG
TCGAGCGAAATTGTGCAAGGCCTGTGGAATGACTTTAATGTGTCGGTGGA
GCATAATTGCCCTTTGACTTGCTTGCCTGAGGCAAAGGACCGGTACTCGC
TGTTTCCCGCCATAACCCTCCACACGTTGAGTGAGTGA
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Coding sequence (CDS) from alignment at scaffold_18:568037..568774+

>mRNA_6731 ID=mRNA_6731|Name=jgi.p|Nanoce1779_2|651801|organism=Nannochloropsis oceanica|type=CDS|length=738bp|location=Sequence derived from alignment at scaffold_18:568037..568774+ (Nannochloropsis oceanica)
ATGCAGCAGCCATCCGTGCAAAAAATAGCGGAGCGCCCCGCCACCTTGAC
GCCCGAGCCCGCAATTTTCTGCATTAAGACATTTATGCCGCATCCGGGTC
ATGAGCAGGATCTGGAAGTTCGACTGAAAGAGCACTGGGATGCGTTGCAC
GCGGCTGGCTTGACGGCACCCAACCAAGAGCCTTTGTTCCTCCGCAGCCG
CGCCGGAAGGGTCTTGGAAGTCTTTGAATGGAAAGATAAAGAATCAATTG
AAGAAGCTCACCGTCGAAGTGAGCTGCACAAAACATGGAAAAATTTATTG
GATATTGCAACAATGGTGCCGCTGGCGTCCTTGGGGGAGAGCAACGAGCC
TTACGCGCATTTCCATGTCCTCATTCCTGGGGTTCTACAGACCACGGGGG
CTATGGCCAAGATTGTTGCGGTCAAACCTCACACTGGAAAATTGAACGAC
CTGGTTGCCAAGCTAAAGAAGCACGACGTGGCGCTGTACAAGGCGGGGTA
TACGACAGAGCGGCCAGTGATGCACATGCGCGGAGAGAAGGAGGGACATT
TGGTGGAGATTGCGGAATGGACATCTTTGGAGAAGGTAAAGGAAGCTCAG
TCGAGCGAAATTGTGCAAGGCCTGTGGAATGACTTTAATGTGTCGGTGGA
GCATAATTGCCCTTTGACTTGCTTGCCTGAGGCAAAGGACCGGTACTCGC
TGTTTCCCGCCATAACCCTCCACACGTTGAGTGAGTGA
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Synonyms
Publications