jgi.p|Nanoce1779_2|672582, mRNA_6730 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|672582
Unique NamemRNA_6730
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length615
Alignment locationscaffold_18:566613..567227 -

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Properties
Property NameValue
TranscriptId672668
TrackFilteredModels2
ProteinId672582
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:566613..567227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672582gene_6730Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672582mRNA_6730-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6730CDS_6730Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6730 ID=mRNA_6730|Name=jgi.p|Nanoce1779_2|672582|organism=Nannochloropsis oceanica|type=mRNA|length=615bp
ATACATATGTATATATATGTGTGTGTGTGTATGCAGTCGTGCCAGTCCTC
TTTGTCCCTTCCCCTTCTTGCTTTCCTTGTCTCGTCCCCCCACCCTCCCT
CGATCCCTCGCATCTTACCATCCACCTTTTCTTCCGCACAAGACACAACA
TGTCAGCGATGAGTTCAACGGCATTGTTATGACACATGCCTGTCGCTTCG
ACGTGGCTAGCATCACTAAGACTTTCACAGCCACTCTCCTTCTCCTCCTC
CTCTCCCGCGGCACCCCCCCGTTCCTTGCCGGCAAGCCCAACAGCACCAA
TAACCCTATCGGTAACAACAGAAGCAGCGTGAATATTGGCACTCTAACCC
TAACCCCCTCCTATAGTTCTTCCTCCCCGCCCTCGTTTGCCCCCTTGCGT
TCCCTTGGGCTCGATACCATCCTTGCCGATGCCTTTGCCTCCCCATCCTT
CCTCCCCTCCCTCCTCGCTCCGCCCCACTGGCACAATGCCACCCTCCGCC
AGCTGCTTTCGCACACCTCAGGCATCGCCGATTACTGGTCTGAACCTTCA
TTTATTCAAGCATTCATTGATTCCCCTCAGCGGCTCTGGACACCCACAGA
AATCTTGACTTACGC
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protein sequence of jgi.p|Nanoce1779_2|672582

>mRNA_6730-protein ID=mRNA_6730-protein|Name=jgi.p|Nanoce1779_2|672582|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MCVCVCSRASPLCPFPFLLSLSRPPTLPRSLASYHPPFLPHKTQHVSDEF
NGIVMTHACRFDVASITKTFTATLLLLLLSRGTPPFLAGKPNSTNNPIGN
NRSSVNIGTLTLTPSYSSSSPPSFAPLRSLGLDTILADAFASPSFLPSLL
APPHWHNATLRQLLSHTSGIADYWSEPSFIQAFIDSPQRLWTPTEILTY
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mRNA from alignment at scaffold_18:566613..567227-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6730 ID=mRNA_6730|Name=jgi.p|Nanoce1779_2|672582|organism=Nannochloropsis oceanica|type=mRNA|length=615bp|location=Sequence derived from alignment at scaffold_18:566613..567227- (Nannochloropsis oceanica)
ATACATATGTATATATATGTGTGTGTGTGTATGCAGTCGTGCCAGTCCTC
TTTGTCCCTTCCCCTTCTTGCTTTCCTTGTCTCGTCCCCCCACCCTCCCT
CGATCCCTCGCATCTTACCATCCACCTTTTCTTCCGCACAAGACACAACA
TGTCAGCGATGAGTTCAACGGCATTGTTATGACACATGCCTGTCGCTTCG
ACGTGGCTAGCATCACTAAGACTTTCACAGCCACTCTCCTTCTCCTCCTC
CTCTCCCGCGGCACCCCCCCGTTCCTTGCCGGCAAGCCCAACAGCACCAA
TAACCCTATCGGTAACAACAGAAGCAGCGTGAATATTGGCACTCTAACCC
TAACCCCCTCCTATAGTTCTTCCTCCCCGCCCTCGTTTGCCCCCTTGCGT
TCCCTTGGGCTCGATACCATCCTTGCCGATGCCTTTGCCTCCCCATCCTT
CCTCCCCTCCCTCCTCGCTCCGCCCCACTGGCACAATGCCACCCTCCGCC
AGCTGCTTTCGCACACCTCAGGCATCGCCGATTACTGGTCTGAACCTTCA
TTTATTCAAGCATTCATTGATTCCCCTCAGCGGCTCTGGACACCCACAGA
AATCTTGACTTACGC
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Coding sequence (CDS) from alignment at scaffold_18:566613..567227-

>mRNA_6730 ID=mRNA_6730|Name=jgi.p|Nanoce1779_2|672582|organism=Nannochloropsis oceanica|type=CDS|length=597bp|location=Sequence derived from alignment at scaffold_18:566613..567227- (Nannochloropsis oceanica)
ATGTGTGTGTGTGTATGCAGTCGTGCCAGTCCTCTTTGTCCCTTCCCCTT
CTTGCTTTCCTTGTCTCGTCCCCCCACCCTCCCTCGATCCCTCGCATCTT
ACCATCCACCTTTTCTTCCGCACAAGACACAACATGTCAGCGATGAGTTC
AACGGCATTGTTATGACACATGCCTGTCGCTTCGACGTGGCTAGCATCAC
TAAGACTTTCACAGCCACTCTCCTTCTCCTCCTCCTCTCCCGCGGCACCC
CCCCGTTCCTTGCCGGCAAGCCCAACAGCACCAATAACCCTATCGGTAAC
AACAGAAGCAGCGTGAATATTGGCACTCTAACCCTAACCCCCTCCTATAG
TTCTTCCTCCCCGCCCTCGTTTGCCCCCTTGCGTTCCCTTGGGCTCGATA
CCATCCTTGCCGATGCCTTTGCCTCCCCATCCTTCCTCCCCTCCCTCCTC
GCTCCGCCCCACTGGCACAATGCCACCCTCCGCCAGCTGCTTTCGCACAC
CTCAGGCATCGCCGATTACTGGTCTGAACCTTCATTTATTCAAGCATTCA
TTGATTCCCCTCAGCGGCTCTGGACACCCACAGAAATCTTGACTTAC
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Synonyms
Publications