jgi.p|Nanoce1779_2|651794, mRNA_6728 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|651794
Unique Name	mRNA_6728
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1417
Alignment location	scaffold_18:558966..560503 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	651880
Track	FilteredModels2
ProteinId	651794

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:558966..560503 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|651794	gene_6728	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|651794	mRNA_6728-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6728	CDS_6728	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:558966..560503+
coding sequence from alignment at scaffold_18:558966..560503+

mRNA sequence

>mRNA_6728 ID=mRNA_6728|Name=jgi.p|Nanoce1779_2|651794|organism=Nannochloropsis oceanica|type=mRNA|length=1417bp
GCGCTTTAACCCCCTGTCGCAAAAGCAAGCAATGCAAGCCCGTTCATTTC
ACTCTCCCTAAACGAACCCAACCATAGACAATAATGAATGACCAGCTCAA
CGAACGCCTTTTTAGAAAACTTAGAGTGCAGTAGCATATGCTATGTTGCC
AACTTCTCCTGGTTGGTTGCGCGGTGTCTCGCTTTGACGCCCCTTCCCCC
TGTCACGAGCAGGTCCAAACCCGTTACCAGATAAAGACGCGCCTGTACAC
AAAAAAATATAGCACGCGTGGATGATCTTAATGATGCTGTTTGTGATTTA
TGATGATGGGCATGGTCTCAATTTATCTCTACGCTGACCTGCACCTATTC
GAATTTTCTCCCCCATTCCCCCATTCACAGCAGCAGCCATGCCACTATCA
AACGATGTTCCCACCCCTCCGCCCCCTCCGCCCCCCGAAGAACTCGAAGC
CTACTGCCGAAGCGCCGAAAAAGCGGCACGTGCTGCAGGCGAGCTCATCA
TGGCCTCCCTACGTGAGCGTCAGACGAACCCTCGCCTTGTTATCGAGAGC
AAGGGCGGTGTGGATCTGGTCACAGAAGTCGATCGACAATGCGAAGAAGG
CATTTTCCAAGCTCTTCGGACCAAGTATCCTACGCATCATTTTGTCGGGG
AAGAGTCTACCTATCTCTCCGGCCCATCCTCCGCCTCCTCCCCTCCTCCT
TTCGGCTCCCCTGGTGAAGCAGCTCCCACCTGGATCTGCGATCCCATCGA
TGGCACAACCAACTTTGTCCATGGCCACCCACTTGTCGCAGTCGCCATTG
CCCTCAGCGTCCACCAAACTATCGTCGTCGGCGTGGTCTTCATCCCCTAC
CTGAACGAGATGTACACTGCGTGGCGAGGGGGAGGAGGCACACGCTGCAA
TGATACCCCCCTCTGCGTGGGCAGGGCCACGGGTATACATGATGCTTTGC
TCGTTAACAATATAGGGTCGTCCCGTGACTGGCGTTTCTCCCATCTGTCC
TTCGCACGCCTCCATTACCTAATGACGAGGGGAGAGCCCGGACCATTGCA
GGGTCTGCGGATGTCGGGCTCGGCCTGTGTGAATCTTGCCATGGTGGCCG
CGGGTAAGGTTGACGTGTATTTGGAAGATGGTTATGGAGGTGTGTGGGAT
GTGGCCGCCGGGAAAATACTCGTAGAGGAGGCGGGGGGGGTCGTTGTAGG
CTTGGGCGGAGAGGCTTGGGAGTTGAATTTAGGGAAGGGCAGGGTGGTGG
CCGGTAATAAAGGTGTGGTGATGGACGTGGTACGAAAGGTAGGGGAGGCG
GACAGGAGGTACCGGTGGAGGGAGCGAGGGAAGACGGGCGTGGTTGGAGT
GGGGATGGGGTTATTTTTGTGGGGGATGAAATGGTACGTGTCGAAGAGAA
GTGGAGAGAGAACATAA

protein sequence of jgi.p|Nanoce1779_2|651794

>mRNA_6728-protein ID=mRNA_6728-protein|Name=jgi.p|Nanoce1779_2|651794|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MPLSNDVPTPPPPPPPEELEAYCRSAEKAARAAGELIMASLRERQTNPRL
VIESKGGVDLVTEVDRQCEEGIFQALRTKYPTHHFVGEESTYLSGPSSAS
SPPPFGSPGEAAPTWICDPIDGTTNFVHGHPLVAVAIALSVHQTIVVGVV
FIPYLNEMYTAWRGGGGTRCNDTPLCVGRATGIHDALLVNNIGSSRDWRF
SHLSFARLHYLMTRGEPGPLQGLRMSGSACVNLAMVAAGKVDVYLEDGYG
GVWDVAAGKILVEEAGGVVVGLGGEAWELNLGKGRVVAGNKGVVMDVVRK
VGEADRRYRWRERGKTGVVGVGMGLFLWGMKWYVSKRSGERT*

mRNA from alignment at scaffold_18:558966..560503+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6728 ID=mRNA_6728|Name=jgi.p|Nanoce1779_2|651794|organism=Nannochloropsis oceanica|type=mRNA|length=1538bp|location=Sequence derived from alignment at scaffold_18:558966..560503+ (Nannochloropsis oceanica)
GCGCTTTAACCCCCTGTCGCAAAAGCAAGCAATGCAAGCCCGTTCATTTC
ACTCTCCCTAAACGAACCCAACCATAGACAATAATGAATGACCAGCTCAA
CGAACGCCTTTTTAGAAAACTTAGAGTGCAGTAGCATATGCTATGTTGCC
AACTTCTCCTGGTTGGTTGCGCGGTGTCTCGCTTTGACGCCCCTTCCCCC
TGTCACGAGCAGGTCCAAACCCGTTACCAGATAAAGACGCGCCTGTACAC
AAAAAAATATAGCACGCGTGGATGATCTTAATGATGCTGTTTGTGATTTA
TGATGATGGGCATGGTCTCAATTTATCTCTACGCTGACCTGCACCTATTC
GAATTTTCTCCCCCATTCCCCCATTCACAGCAGCAGCCATGCCACTATCA
AACGATGTTCCCACCCCTCCGCCCCCTCCGCCCCCCGAAGAACTCGAAGC
CTACTGCCGAAGCGCCGAAAAAGCGGCACGTGCTGCAGGCGAGCTCATCA
TGGCCTCCCTACGTGAGCGTCAGACGAACCCTCGCCTTGTTATCGAGAGC
AAGGGCGGTGTGGATCTGGTCACAGAAGTCGATCGACAATGCGAAGAAGG
CATTTTCCAAGCTCTTCGGACCAAGTATCCTACGCATCATTTTGTCGGGG
AAGAGTCTACCTATCTCTCCGGCCCATCCTCCGCCTCCTCCCCTCCTCCT
TTCGGCTCCCCTGGTGAAGCAGCTCCCACCTGGATCTGCGATCCCATCGA
TGGTACACTTGATGCACTCATTTTCAAACCCCACTTCCTCCCCTTCTCCC
GCCCCTCCGAAATCACACTTTCCATAAACTCACTTTTTATTATCCTCTCG
TCTCACTCCTACCTCTCTAACAGGCACAACCAACTTTGTCCATGGCCACC
CACTTGTCGCAGTCGCCATTGCCCTCAGCGTCCACCAAACTATCGTCGTC
GGCGTGGTCTTCATCCCCTACCTGAACGAGATGTACACTGCGTGGCGAGG
GGGAGGAGGCACACGCTGCAATGATACCCCCCTCTGCGTGGGCAGGGCCA
CGGGTATACATGATGCTTTGCTCGTTAACAATATAGGGTCGTCCCGTGAC
TGGCGTTTCTCCCATCTGTCCTTCGCACGCCTCCATTACCTAATGACGAG
GGGAGAGCCCGGACCATTGCAGGGTCTGCGGATGTCGGGCTCGGCCTGTG
TGAATCTTGCCATGGTGGCCGCGGGTAAGGTTGACGTGTATTTGGAAGAT
GGTTATGGAGGTGTGTGGGATGTGGCCGCCGGGAAAATACTCGTAGAGGA
GGCGGGGGGGGTCGTTGTAGGCTTGGGCGGAGAGGCTTGGGAGTTGAATT
TAGGGAAGGGCAGGGTGGTGGCCGGTAATAAAGGTGTGGTGATGGACGTG
GTACGAAAGGTAGGGGAGGCGGACAGGAGGTACCGGTGGAGGGAGCGAGG
GAAGACGGGCGTGGTTGGAGTGGGGATGGGGTTATTTTTGTGGGGGATGA
AATGGTACGTGTCGAAGAGAAGTGGAGAGAGAACATAA

Coding sequence (CDS) from alignment at scaffold_18:558966..560503+

>mRNA_6728 ID=mRNA_6728|Name=jgi.p|Nanoce1779_2|651794|organism=Nannochloropsis oceanica|type=CDS|length=2058bp|location=Sequence derived from alignment at scaffold_18:558966..560503+ (Nannochloropsis oceanica)
ATGCCACTATCAAACGATGTTCCCACCCCTCCGCCCCCTCCGCCCCCCGA
AGAACTCGAAGCCTACTGCCGAAGCGCCGAAAAAGCGGCACGTGCTGCAG
GCGAGCTCATCATGGCCTCCCTACGTGAGCGTCAGACGAACCCTCGCCTT
GTTATCGAGAGCAAGGGCGGTGTGGATCTGGTCACAGAAGTCGATCGACA
ATGCGAAGAAGGCATTTTCCAAGCTCTTCGGACCAAGTATCCTACGCATC
ATTTTGTCGGGGAAGAGTCTACCTATCTCTCCGGCCCATCCTCCGCCTCC
TCCCCTCCTCCTTTCGGCTCCCCTGGTGAAGCAGCTCCCACCTGGATCTG
CGATCCCATCGATGGCACAACCAACTTTGTCCATGGCCACCCACTTGTCG
CAGTCGCCATTGCCCTCAGCGTCCACCAAACTATCGTCGTCGGCGTGGTC
TTCATCCCCTACCTGAACGAGATGTACACTGCGTGGCGAGGGGGAGGAGG
CACACGCTGCAATGATACCCCCCTCTGCGTGGGCAGGGCCACGGGTATAC
ATGATGCTTTGCTCGTTAACAATATAGGGTCGTCCCGTGACTGGCGTTTC
TCCCATCTGTCCTTCGCACGCCTCCATTACCTAATGACGAGGGGAGAGCC
CGGACCATTGCAGGGTCTGCGGATGTCGGGCTCGGCCTGTGTGAATCTTG
CCATGGTGGCCGCGGGTAAGGTTGACGTGTATTTGGAAGATGGTTATGGA
GGTGTGTGGGATGTGGCCGCCGGGAAAATACTCGTAGAGGAGGCGGGGGG
GGTCGTTGTAGGCTTGGGCGGAGAGGCTTGGGAGTTGAATTTAGGGAAGG
GCAGGGTGGTGGCCGGTAATAAAGGTGTGGTGATGGACGTGGTACGAAAG
GTAGGGGAGGCGGACAGGAGGTACCGGTGGAGGGAGCGAGGGAAGACGGG
CGTGGTTGGAGTGGGGATGGGGTTATTTTTGTGGGGGATGAAATGGTACG
TGTCGAAGAGAAGTGGAGAGAGAACATAAATGCCACTATCAAACGATGTT
CCCACCCCTCCGCCCCCTCCGCCCCCCGAAGAACTCGAAGCCTACTGCCG
AAGCGCCGAAAAAGCGGCACGTGCTGCAGGCGAGCTCATCATGGCCTCCC
TACGTGAGCGTCAGACGAACCCTCGCCTTGTTATCGAGAGCAAGGGCGGT
GTGGATCTGGTCACAGAAGTCGATCGACAATGCGAAGAAGGCATTTTCCA
AGCTCTTCGGACCAAGTATCCTACGCATCATTTTGTCGGGGAAGAGTCTA
CCTATCTCTCCGGCCCATCCTCCGCCTCCTCCCCTCCTCCTTTCGGCTCC
CCTGGTGAAGCAGCTCCCACCTGGATCTGCGATCCCATCGATGGCACAAC
CAACTTTGTCCATGGCCACCCACTTGTCGCAGTCGCCATTGCCCTCAGCG
TCCACCAAACTATCGTCGTCGGCGTGGTCTTCATCCCCTACCTGAACGAG
ATGTACACTGCGTGGCGAGGGGGAGGAGGCACACGCTGCAATGATACCCC
CCTCTGCGTGGGCAGGGCCACGGGTATACATGATGCTTTGCTCGTTAACA
ATATAGGGTCGTCCCGTGACTGGCGTTTCTCCCATCTGTCCTTCGCACGC
CTCCATTACCTAATGACGAGGGGAGAGCCCGGACCATTGCAGGGTCTGCG
GATGTCGGGCTCGGCCTGTGTGAATCTTGCCATGGTGGCCGCGGGTAAGG
TTGACGTGTATTTGGAAGATGGTTATGGAGGTGTGTGGGATGTGGCCGCC
GGGAAAATACTCGTAGAGGAGGCGGGGGGGGTCGTTGTAGGCTTGGGCGG
AGAGGCTTGGGAGTTGAATTTAGGGAAGGGCAGGGTGGTGGCCGGTAATA
AAGGTGTGGTGATGGACGTGGTACGAAAGGTAGGGGAGGCGGACAGGAGG
TACCGGTGGAGGGAGCGAGGGAAGACGGGCGTGGTTGGAGTGGGGATGGG
GTTATTTTTGTGGGGGATGAAATGGTACGTGTCGAAGAGAAGTGGAGAGA
GAACATAA

Synonyms

Publications