jgi.p|Nanoce1779_2|623760, mRNA_6726 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|623760
Unique NamemRNA_6726
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length777
Alignment locationscaffold_18:552144..553509 -

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Properties
Property NameValue
TranscriptId623846
TrackFilteredModels2
ProteinId623760
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:552144..553509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|623760gene_6726Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|623760mRNA_6726-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6726CDS_6726Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6726 ID=mRNA_6726|Name=jgi.p|Nanoce1779_2|623760|organism=Nannochloropsis oceanica|type=mRNA|length=777bp
ATGACGACCAACATCTCCAAGAAGCGCAAGTTCATTGCGGATGGTGTGTT
CTATGCCGAGCTGAACGAGCTCCTGACCCGCGAGCTGGCCGAGGACGGTT
ACGCCGGTGTGGAAGTCCGCGTGGTACCCCTGCGCACGGAGATCATTATT
CGTGCCACCCGGACGCAAAACGTGCTTGGCGAGAAGGGCCAACGCATTCG
CGAGCTGACCACCGTCATCCAAAAGCGATTCAACTTCCCCGACGGTGTGG
TGGAGCTTTTCGCCGAGAAGGTGGCTTCGCGTGGGTTGTGCGCGCAGGCG
CAGGCCGAGTCCCTGAAGTACAAGCTCTTGGGCGGCCTGGCCGTGCGTCG
TGCCTGTTATGGTGTCCTCCGCTTCGTGATGGAGCAAGGCGCCAAGGGGG
CTGAGGTTGTTGTCTCTGGTAAGCTCCGCGCGCAGCGTGCTAAGAGCATG
AAGTTCCAAGACGGGTACATGATCAAGTCCGGGCAGGCCAAGCGGGAGTA
CGTGGACTACGCCGTGCGACACGTGCTGATGCGCCAGGGAGTGCTGGGTG
TCAAGGTCAAGATCATGCTTCCCCACGACCCTCAAGGGAAGATCGGCCCG
AAGGCCAAGCTTTCGGATGTGGTGGTGGTGCACGAGCCGAAGGAGGAGTT
GGATTTGCCCATGCCGGAGCCGAAAGGCAAGGAATGGAATGTCGTGGTTG
ACAGTCAAAAGGGCAAGGGAGCATGGCATACAAAGGACGTCTGCGAATTG
AAGAAGGAAAAGAAGCAAAAAAAATAG
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protein sequence of jgi.p|Nanoce1779_2|623760

>mRNA_6726-protein ID=mRNA_6726-protein|Name=jgi.p|Nanoce1779_2|623760|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MTTNISKKRKFIADGVFYAELNELLTRELAEDGYAGVEVRVVPLRTEIII
RATRTQNVLGEKGQRIRELTTVIQKRFNFPDGVVELFAEKVASRGLCAQA
QAESLKYKLLGGLAVRRACYGVLRFVMEQGAKGAEVVVSGKLRAQRAKSM
KFQDGYMIKSGQAKREYVDYAVRHVLMRQGVLGVKVKIMLPHDPQGKIGP
KAKLSDVVVVHEPKEELDLPMPEPKGKEWNVVVDSQKGKGAWHTKDVCEL
KKEKKQKK*
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mRNA from alignment at scaffold_18:552144..553509-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6726 ID=mRNA_6726|Name=jgi.p|Nanoce1779_2|623760|organism=Nannochloropsis oceanica|type=mRNA|length=1366bp|location=Sequence derived from alignment at scaffold_18:552144..553509- (Nannochloropsis oceanica)
ATGACGACCAACATCTCCAAGAAGCGCAAGTTCATTGCGGATGGTGTGTT
CTATGCCGAGCTGAACGAGGTAAGTGCGGGGAAGTGCGCGCGTCGAGGAA
AGGAAGGGGAGAGCTGAAGCAAGGGTAGTTAATCGAGCGGGAGGCAAAAA
GCATGCTGCAACGACCTGGTCTCCTGAACGTGAAGTGCTCACCTTGTCGT
TATGGCAGGATCAGGACGTATGTGTGGAGGATATGTGTGGTGGGACGAGC
TGTGGTGGGAGATTTTGGCAGACGTGGATTGGGAATCGAGGATGGCTTCA
AGATGACGGAGCAACACTGTGAAAGCACCCGAGGAGGAAGGATAAAAAGC
TGGGAGGGACAGAGGACTGTTAGAAGCGAAGAGGAGTTGTATCGCGAGCG
AAATGTATTATCAGTCCAGACATTCATCTTTTCTGACCCTCCCTTCCTTG
GTATTTCCCCATACCATCCCCTCATCCACCCCACAGCTCCTGACCCGCGA
GCTGGCCGAGGACGGTTACGCCGGTGTGGAAGTCCGCGTGGTACCCCTGC
GCACGGAGATCATTATTCGTGCCACCCGGACGCAAAACGTGCTTGGCGAG
AAGGGCCAACGCATTCGCGAGCTGACCACCGTCATCCAAAAGCGATTCAA
CTTCCCCGACGGTGTGGTGGAGCTTTTCGCCGAGAAGGTGGCTTCGCGTG
GGTTGTGCGCGCAGGCGCAGGCCGAGTCCCTGAAGTACAAGCTCTTGGGC
GGCCTGGCCGTGCGTCGTGCCTGTTATGGTGTCCTCCGCTTCGTGATGGA
GCAAGGCGCCAAGGGGGCTGAGGTTGTTGTCTCTGGTAAGCTCCGCGCGC
AGCGTGCTAAGAGCATGAAGTTCCAAGACGGGTACATGATCAAGTCCGGG
CAGGCCAAGCGGGAGTACGTGGACTACGCCGTGCGACACGTGCTGATGCG
CCAGGGAGTGCTGGGTGTCAAGGTCAAGATCATGCTTCCCCACGACCCTC
AAGGGAAGATCGGCCCGAAGGCCAAGCTTTCGGATGTGGTGGTGGTGCAC
GAGCCGAAGGAGGAGTTGGATTTGCCCATGCCGGAGCCGGTGGCGATGCC
CTACGGAGGGATGGCAGGAGGGATGGCGCCGGCTCCCATGGCCACCTATT
AAGTTGGTGGGTAGTTTGATGTGATCGGCTGAAAGGAGGGATGAGATCGC
TGTCTTGTTTGCTTGGTCCTGCGACTAGAGTCCGGAATTGTATGTCTTTC
CATTTCCTCAGAAAGGCAAGGAATGGAATGTCGTGGTTGACAGTCAAAAG
GGCAAGGGAGCATGGCATACAAAGGACGTCTGCGAATTGAAGAAGGAAAA
GAAGCAAAAAAAATAG
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Coding sequence (CDS) from alignment at scaffold_18:552144..553509-

>mRNA_6726 ID=mRNA_6726|Name=jgi.p|Nanoce1779_2|623760|organism=Nannochloropsis oceanica|type=CDS|length=2331bp|location=Sequence derived from alignment at scaffold_18:552144..553509- (Nannochloropsis oceanica)
AAAGGCAAGGAATGGAATGTCGTGGTTGACAGTCAAAAGGGCAAGGGAGC
ATGGCATACAAAGGACGTCTGCGAATTGAAGAAGGAAAAGAAGCAAAAAA
AATAGCTCCTGACCCGCGAGCTGGCCGAGGACGGTTACGCCGGTGTGGAA
GTCCGCGTGGTACCCCTGCGCACGGAGATCATTATTCGTGCCACCCGGAC
GCAAAACGTGCTTGGCGAGAAGGGCCAACGCATTCGCGAGCTGACCACCG
TCATCCAAAAGCGATTCAACTTCCCCGACGGTGTGGTGGAGCTTTTCGCC
GAGAAGGTGGCTTCGCGTGGGTTGTGCGCGCAGGCGCAGGCCGAGTCCCT
GAAGTACAAGCTCTTGGGCGGCCTGGCCGTGCGTCGTGCCTGTTATGGTG
TCCTCCGCTTCGTGATGGAGCAAGGCGCCAAGGGGGCTGAGGTTGTTGTC
TCTGGTAAGCTCCGCGCGCAGCGTGCTAAGAGCATGAAGTTCCAAGACGG
GTACATGATCAAGTCCGGGCAGGCCAAGCGGGAGTACGTGGACTACGCCG
TGCGACACGTGCTGATGCGCCAGGGAGTGCTGGGTGTCAAGGTCAAGATC
ATGCTTCCCCACGACCCTCAAGGGAAGATCGGCCCGAAGGCCAAGCTTTC
GGATGTGGTGGTGGTGCACGAGCCGAAGGAGGAGTTGGATTTGCCCATGC
CGGAGCCGATGACGACCAACATCTCCAAGAAGCGCAAGTTCATTGCGGAT
GGTGTGTTCTATGCCGAGCTGAACGAGAAAGGCAAGGAATGGAATGTCGT
GGTTGACAGTCAAAAGGGCAAGGGAGCATGGCATACAAAGGACGTCTGCG
AATTGAAGAAGGAAAAGAAGCAAAAAAAATAGCTCCTGACCCGCGAGCTG
GCCGAGGACGGTTACGCCGGTGTGGAAGTCCGCGTGGTACCCCTGCGCAC
GGAGATCATTATTCGTGCCACCCGGACGCAAAACGTGCTTGGCGAGAAGG
GCCAACGCATTCGCGAGCTGACCACCGTCATCCAAAAGCGATTCAACTTC
CCCGACGGTGTGGTGGAGCTTTTCGCCGAGAAGGTGGCTTCGCGTGGGTT
GTGCGCGCAGGCGCAGGCCGAGTCCCTGAAGTACAAGCTCTTGGGCGGCC
TGGCCGTGCGTCGTGCCTGTTATGGTGTCCTCCGCTTCGTGATGGAGCAA
GGCGCCAAGGGGGCTGAGGTTGTTGTCTCTGGTAAGCTCCGCGCGCAGCG
TGCTAAGAGCATGAAGTTCCAAGACGGGTACATGATCAAGTCCGGGCAGG
CCAAGCGGGAGTACGTGGACTACGCCGTGCGACACGTGCTGATGCGCCAG
GGAGTGCTGGGTGTCAAGGTCAAGATCATGCTTCCCCACGACCCTCAAGG
GAAGATCGGCCCGAAGGCCAAGCTTTCGGATGTGGTGGTGGTGCACGAGC
CGAAGGAGGAGTTGGATTTGCCCATGCCGGAGCCGATGACGACCAACATC
TCCAAGAAGCGCAAGTTCATTGCGGATGGTGTGTTCTATGCCGAGCTGAA
CGAGAAAGGCAAGGAATGGAATGTCGTGGTTGACAGTCAAAAGGGCAAGG
GAGCATGGCATACAAAGGACGTCTGCGAATTGAAGAAGGAAAAGAAGCAA
AAAAAATAGCTCCTGACCCGCGAGCTGGCCGAGGACGGTTACGCCGGTGT
GGAAGTCCGCGTGGTACCCCTGCGCACGGAGATCATTATTCGTGCCACCC
GGACGCAAAACGTGCTTGGCGAGAAGGGCCAACGCATTCGCGAGCTGACC
ACCGTCATCCAAAAGCGATTCAACTTCCCCGACGGTGTGGTGGAGCTTTT
CGCCGAGAAGGTGGCTTCGCGTGGGTTGTGCGCGCAGGCGCAGGCCGAGT
CCCTGAAGTACAAGCTCTTGGGCGGCCTGGCCGTGCGTCGTGCCTGTTAT
GGTGTCCTCCGCTTCGTGATGGAGCAAGGCGCCAAGGGGGCTGAGGTTGT
TGTCTCTGGTAAGCTCCGCGCGCAGCGTGCTAAGAGCATGAAGTTCCAAG
ACGGGTACATGATCAAGTCCGGGCAGGCCAAGCGGGAGTACGTGGACTAC
GCCGTGCGACACGTGCTGATGCGCCAGGGAGTGCTGGGTGTCAAGGTCAA
GATCATGCTTCCCCACGACCCTCAAGGGAAGATCGGCCCGAAGGCCAAGC
TTTCGGATGTGGTGGTGGTGCACGAGCCGAAGGAGGAGTTGGATTTGCCC
ATGCCGGAGCCGATGACGACCAACATCTCCAAGAAGCGCAAGTTCATTGC
GGATGGTGTGTTCTATGCCGAGCTGAACGAG
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Synonyms
Publications