jgi.p|Nanoce1779_2|597828, mRNA_6723 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597828
Unique NamemRNA_6723
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length976
Alignment locationscaffold_18:544453..545428 -

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Properties
Property NameValue
TranscriptId597914
TrackFilteredModels2
ProteinId597828
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:544453..545428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597828gene_6723Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597828mRNA_6723-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6723CDS_6723Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6723 ID=mRNA_6723|Name=jgi.p|Nanoce1779_2|597828|organism=Nannochloropsis oceanica|type=mRNA|length=976bp
AGGCGACTTTCCAGTGTCGACGTATGTTCTTCCCCGAGGCTGTACAGGCC
CTGTCGGCAGGGGCTTGGGTTGCTTTGCTGGTCACAACATTGGTCTTGTG
GATGAGCTGGCGCTTCAATCTCCAAGGCAGCTTCCAGGCCTACGTCTATG
ACAAGCGGTACGTGGAAGGGGTGTCGTTGTTGTGGTATCGACAGCAGTGG
GTAAAGTGGGGGGAAATGGAGGAATCAGAAACCCTCCTTTCCTGCACATG
AATTACCGCCCCCTTTTTTGAAATGGCGTGCGATGAAGCGCTCTACATCT
ATTTTTATTATACTGTGCCTTTGTACGGTAAGCACTGGCGGCCTTTGAAG
ACTTGGATTGAGAAAGAGGTCAGGTGGAAGTTTGGAAGTGACTTTGCCTT
TCCCTCCCCTCCTGCCTGTCCTCTGTCTCGGTCGCACACGCTCTAACACA
ATCTCATTCCCGTATATCGAGCTCCAGGTTCTCTCATAGACAGACGCTCG
TCTCGACTCGTCTTCCTCAACATGTTTCTTCTTTTCCCTCCATCCCCTCT
CCCTCCTCCCAAACCAGGGGCACCCGTCTCCCAGGCCCTATCAACAAATG
GCCTTTCGGATTCGTCTGGACCGTGCGTGAATGGCGCCGTCAAAACATCT
GGTGGATCAAATCCAAGGAGATCTTCGACATCCACGGCCACACTATTGGC
TTCCGCGTCTTCTCCTCCTACTCCATCCTAACCGCTGACCCCGACTGTGT
TCGTGCCATCGTCACGGGCTCCGCCGACCTCTTCCCCAAGGGTCATCTAT
ACAAACACTTGGGCCTTCTACCCGGCGGACTTTTCACGACCAACGGTCCG
CGCTGGCGGAGGGACAGAAGGCTGCTGAACCCTCACTTTAGCTTTAGTGC
GGTAGCTACCTATGTCCCAAGCTTCAATGCCCACGTTGACGAGTTCTTGG
GGGGTCTAAAGGGACGATGTGTGGGA
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protein sequence of jgi.p|Nanoce1779_2|597828

>mRNA_6723-protein ID=mRNA_6723-protein|Name=jgi.p|Nanoce1779_2|597828|organism=Nannochloropsis oceanica|type=polypeptide|length=76bp
MFFPEAVQALSAGAWVALLVTTLVLWMSWRFNLQGSFQAYVYDKRYVEGV
SLLWYRQQWVKWGEMEESETLLSCT*
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mRNA from alignment at scaffold_18:544453..545428-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6723 ID=mRNA_6723|Name=jgi.p|Nanoce1779_2|597828|organism=Nannochloropsis oceanica|type=mRNA|length=976bp|location=Sequence derived from alignment at scaffold_18:544453..545428- (Nannochloropsis oceanica)
AGGCGACTTTCCAGTGTCGACGTATGTTCTTCCCCGAGGCTGTACAGGCC
CTGTCGGCAGGGGCTTGGGTTGCTTTGCTGGTCACAACATTGGTCTTGTG
GATGAGCTGGCGCTTCAATCTCCAAGGCAGCTTCCAGGCCTACGTCTATG
ACAAGCGGTACGTGGAAGGGGTGTCGTTGTTGTGGTATCGACAGCAGTGG
GTAAAGTGGGGGGAAATGGAGGAATCAGAAACCCTCCTTTCCTGCACATG
AATTACCGCCCCCTTTTTTGAAATGGCGTGCGATGAAGCGCTCTACATCT
ATTTTTATTATACTGTGCCTTTGTACGGTAAGCACTGGCGGCCTTTGAAG
ACTTGGATTGAGAAAGAGGTCAGGTGGAAGTTTGGAAGTGACTTTGCCTT
TCCCTCCCCTCCTGCCTGTCCTCTGTCTCGGTCGCACACGCTCTAACACA
ATCTCATTCCCGTATATCGAGCTCCAGGTTCTCTCATAGACAGACGCTCG
TCTCGACTCGTCTTCCTCAACATGTTTCTTCTTTTCCCTCCATCCCCTCT
CCCTCCTCCCAAACCAGGGGCACCCGTCTCCCAGGCCCTATCAACAAATG
GCCTTTCGGATTCGTCTGGACCGTGCGTGAATGGCGCCGTCAAAACATCT
GGTGGATCAAATCCAAGGAGATCTTCGACATCCACGGCCACACTATTGGC
TTCCGCGTCTTCTCCTCCTACTCCATCCTAACCGCTGACCCCGACTGTGT
TCGTGCCATCGTCACGGGCTCCGCCGACCTCTTCCCCAAGGGTCATCTAT
ACAAACACTTGGGCCTTCTACCCGGCGGACTTTTCACGACCAACGGTCCG
CGCTGGCGGAGGGACAGAAGGCTGCTGAACCCTCACTTTAGCTTTAGTGC
GGTAGCTACCTATGTCCCAAGCTTCAATGCCCACGTTGACGAGTTCTTGG
GGGGTCTAAAGGGACGATGTGTGGGA
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Coding sequence (CDS) from alignment at scaffold_18:544453..545428-

>mRNA_6723 ID=mRNA_6723|Name=jgi.p|Nanoce1779_2|597828|organism=Nannochloropsis oceanica|type=CDS|length=228bp|location=Sequence derived from alignment at scaffold_18:544453..545428- (Nannochloropsis oceanica)
ATGTTCTTCCCCGAGGCTGTACAGGCCCTGTCGGCAGGGGCTTGGGTTGC
TTTGCTGGTCACAACATTGGTCTTGTGGATGAGCTGGCGCTTCAATCTCC
AAGGCAGCTTCCAGGCCTACGTCTATGACAAGCGGTACGTGGAAGGGGTG
TCGTTGTTGTGGTATCGACAGCAGTGGGTAAAGTGGGGGGAAATGGAGGA
ATCAGAAACCCTCCTTTCCTGCACATGA
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Synonyms
Publications