jgi.p|Nanoce1779_2|597826, mRNA_6722 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597826
Unique NamemRNA_6722
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1025
Alignment locationscaffold_18:543428..544452 +

Link to JBrowse

Properties
Property NameValue
TranscriptId597912
TrackFilteredModels2
ProteinId597826
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:543428..544452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597826gene_6722Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597826mRNA_6722-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6722CDS_6722Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6722 ID=mRNA_6722|Name=jgi.p|Nanoce1779_2|597826|organism=Nannochloropsis oceanica|type=mRNA|length=1025bp
TCCCCTCCCTTCGCATGCCCCTGCTGCCCCTCCGCCCAGCGATCGGGCCA
GAACTCGTCCGGACGTTCCCATAGCGCGGGAGAGCGATGCAATGTATACA
CAGAGACACCGACGTGCCAGCCTTTAGGGATAAGGTAGCCCCCTAAATGA
AGGTCCTTGAGAGTGCGACGACTAAACATCGTGACAGGGGGATGCATCCG
CAAGGACTCCTTGAGGACGGAGCGGAGGAAGGGCATGCGTTCTACGTGGG
TGGCGTCGATGGCCGAAGAATATGAGGTCGAAGCAGGCTGGAAAGATCCA
CAGACTTCATCAATTTCAGCGCGGAGCCTCTGGACGAGATCGGGCCGCTC
CCCGAGCTCCATTAAAGTCCAGGTGAGCATCGCGGAAGTGGTCTCATGTC
CCGCCACCAGCATCGTCATACTATGCGCCAAAAGCTCCTGTGTGTACCAC
GTACCTTCCTCGTGCACCGCCATCATCAGATCCAGCAAGTTCCCACGTGT
CTCCTCCATTCCTCCCTCCCTCCCAGCTTCCCGATCCTCCGCACGTTTCC
GGCGTTCAGCGATGGCCTTGTCGATGACGCCCCGGAGCACGCGGGTCGCG
TCCTTGGCTTGGGAGTACCGACGGGGGAAGTACTTGAAGAAGGGTAAGGG
GTCCGTGAGACGTTTGGCGACCTCGGTGAAAGCGATGCGGAGGGCCTCGG
CGATGACGTCTCCTTCGTCCCGGGCATTGTCCAGTAGACGGTCCATGCCG
CGGCTACCATCATCGCCCCCTTCCCTAGAGGAAGGGCTACAGGAGGGAGA
AGGGGAGGAAGGAGGAACTAGACCAGTATCCGAGGCCCGGGCGTGTCGGT
AGCGGACTTGTCGAACCGCGTGTAGGTCATGGCCGAAGCCGGCGTCAAAA
ATAATATCTAGCGTCAGCCGATTAAAACCTTGCACCATATCCACCACCAC
CCCCTCCTCCCTCTCTTCCTCCTTTCTACCGCTTATTTCTCCTCTCGCTG
CTACCCCATTCTCCTTCCCTCCCTC
back to top

protein sequence of jgi.p|Nanoce1779_2|597826

>mRNA_6722-protein ID=mRNA_6722-protein|Name=jgi.p|Nanoce1779_2|597826|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MRSTWVASMAEEYEVEAGWKDPQTSSISARSLWTRSGRSPSSIKVQVSIA
EVVSCPATSIVILCAKSSCVYHVPSSCTAIIRSSKFPRVSSIPPSLPASR
SSARFRRSAMALSMTPRSTRVASLAWEYRRGKYLKKGKGSVRRLATSVKA
MRRASAMTSPSSRALSSRRSMPRLPSSPPSLEEGLQEGEGEEGGTRPVSE
ARACR*
back to top

mRNA from alignment at scaffold_18:543428..544452+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6722 ID=mRNA_6722|Name=jgi.p|Nanoce1779_2|597826|organism=Nannochloropsis oceanica|type=mRNA|length=1025bp|location=Sequence derived from alignment at scaffold_18:543428..544452+ (Nannochloropsis oceanica)
TCCCCTCCCTTCGCATGCCCCTGCTGCCCCTCCGCCCAGCGATCGGGCCA
GAACTCGTCCGGACGTTCCCATAGCGCGGGAGAGCGATGCAATGTATACA
CAGAGACACCGACGTGCCAGCCTTTAGGGATAAGGTAGCCCCCTAAATGA
AGGTCCTTGAGAGTGCGACGACTAAACATCGTGACAGGGGGATGCATCCG
CAAGGACTCCTTGAGGACGGAGCGGAGGAAGGGCATGCGTTCTACGTGGG
TGGCGTCGATGGCCGAAGAATATGAGGTCGAAGCAGGCTGGAAAGATCCA
CAGACTTCATCAATTTCAGCGCGGAGCCTCTGGACGAGATCGGGCCGCTC
CCCGAGCTCCATTAAAGTCCAGGTGAGCATCGCGGAAGTGGTCTCATGTC
CCGCCACCAGCATCGTCATACTATGCGCCAAAAGCTCCTGTGTGTACCAC
GTACCTTCCTCGTGCACCGCCATCATCAGATCCAGCAAGTTCCCACGTGT
CTCCTCCATTCCTCCCTCCCTCCCAGCTTCCCGATCCTCCGCACGTTTCC
GGCGTTCAGCGATGGCCTTGTCGATGACGCCCCGGAGCACGCGGGTCGCG
TCCTTGGCTTGGGAGTACCGACGGGGGAAGTACTTGAAGAAGGGTAAGGG
GTCCGTGAGACGTTTGGCGACCTCGGTGAAAGCGATGCGGAGGGCCTCGG
CGATGACGTCTCCTTCGTCCCGGGCATTGTCCAGTAGACGGTCCATGCCG
CGGCTACCATCATCGCCCCCTTCCCTAGAGGAAGGGCTACAGGAGGGAGA
AGGGGAGGAAGGAGGAACTAGACCAGTATCCGAGGCCCGGGCGTGTCGGT
AGCGGACTTGTCGAACCGCGTGTAGGTCATGGCCGAAGCCGGCGTCAAAA
ATAATATCTAGCGTCAGCCGATTAAAACCTTGCACCATATCCACCACCAC
CCCCTCCTCCCTCTCTTCCTCCTTTCTACCGCTTATTTCTCCTCTCGCTG
CTACCCCATTCTCCTTCCCTCCCTC
back to top

Coding sequence (CDS) from alignment at scaffold_18:543428..544452+

>mRNA_6722 ID=mRNA_6722|Name=jgi.p|Nanoce1779_2|597826|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_18:543428..544452+ (Nannochloropsis oceanica)
ATGCGTTCTACGTGGGTGGCGTCGATGGCCGAAGAATATGAGGTCGAAGC
AGGCTGGAAAGATCCACAGACTTCATCAATTTCAGCGCGGAGCCTCTGGA
CGAGATCGGGCCGCTCCCCGAGCTCCATTAAAGTCCAGGTGAGCATCGCG
GAAGTGGTCTCATGTCCCGCCACCAGCATCGTCATACTATGCGCCAAAAG
CTCCTGTGTGTACCACGTACCTTCCTCGTGCACCGCCATCATCAGATCCA
GCAAGTTCCCACGTGTCTCCTCCATTCCTCCCTCCCTCCCAGCTTCCCGA
TCCTCCGCACGTTTCCGGCGTTCAGCGATGGCCTTGTCGATGACGCCCCG
GAGCACGCGGGTCGCGTCCTTGGCTTGGGAGTACCGACGGGGGAAGTACT
TGAAGAAGGGTAAGGGGTCCGTGAGACGTTTGGCGACCTCGGTGAAAGCG
ATGCGGAGGGCCTCGGCGATGACGTCTCCTTCGTCCCGGGCATTGTCCAG
TAGACGGTCCATGCCGCGGCTACCATCATCGCCCCCTTCCCTAGAGGAAG
GGCTACAGGAGGGAGAAGGGGAGGAAGGAGGAACTAGACCAGTATCCGAG
GCCCGGGCGTGTCGGTAG
back to top
Synonyms
Publications