jgi.p|Nanoce1779_2|597825, mRNA_6721 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597825
Unique NamemRNA_6721
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1164
Alignment locationscaffold_18:542264..543427 -

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Properties
Property NameValue
TranscriptId597911
TrackFilteredModels2
ProteinId597825
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:542264..543427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597825gene_6721Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597825mRNA_6721-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6721CDS_6721Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6721 ID=mRNA_6721|Name=jgi.p|Nanoce1779_2|597825|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp
GGAGGGAGGAAAGGAGCGAGTGAGAGCTGTGAGCCTTGATGGGGGAGGGG
CGGGAGTGTCTCCGCCACGCACGCCTGTGTCCGTGCATCGGGCAGCAGCG
GTAGCCAATGCAGAAGGAGGTGCTCCAGCGACCTTCCTCTCTTCCCCTAA
ACCCGCTTCTTCTTCAACCCCTACGACCGGCAGCAGCAGCGGAGCCAGAA
GCAGCAGCAGCAGCAGTCATAGCAGGAGGGCCAGTACCAGCAGTATTCCT
ATGCCCCTCCCCAAAGGCCCGCTCAAGTCCCCATTTCAATATGTACCCTT
CTCCCTAGGCCCGCGGAATTGCATCGGGCAACGATTTGGGACCATGGAAG
CGAGCATTATATTAGCAAGGCTGTTGCGAGAGTGGGATGTAACGCTGCTA
GATCGAGCGGCCACGGTGCAGCGACTGGAGCTGCTGACAGTGAGGCCTGA
TAGGCTGCTCTGTAAATTGACACCAAGGAAGGTTTCCCCTGGTGCGACTC
CGTCCGGTGCTGCTGCTTTTTCCTCCTTTTTTGCAGTAGGGGCTGGAATG
ACTTGTGGGGGAGATAGAAATATAGCGCAGGCTTGCATTCCGTAAATTAA
GAGTGCCTGTGTCGAATGAGTCGGGAGAGACTGCACTATACCCGAGGTTG
GAAAATAGGGGGGAAAGCCGAAGAGGGGAAGAGGCGGAAGGACAGAGGAA
GAATGAAGTAATGAGTCAAATTTTTCGACTCGACTTATTTTTCTTTTGAA
TGAAATAAATATGTAAGCCCTGTATGTAAAGGAAAAGTGCAGGCTATTGT
AAAGTACTCAAACAAAAATATGACGCGGTTGTTAAAATAAAAGCTGACGA
TAAGCACGAGAAGACGAGGAGGAGCGACACTAATGTGACGGTGGTCGAAA
GCAGCCTGACAACATCGGGAGGAAAGATTTATACAGCAAATAAGTCAAAC
ACAAGTTAATAATACATTTAAAGTGAAATAATATGTGTATGTGCGTATAC
ATTCGAGCCATTTTCACAAAGTACAAACAAAGAAAGAAATGGGTGGATGG
AATGACATCCTCTATGGCGCAGTCACTGATAATGTAATGAAATGCAGTCC
AACAGGTGAGGGCACACCATATCAAATCAGATCAAACAAAGAACAAATTA
TGATGAGTATTAGC
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protein sequence of jgi.p|Nanoce1779_2|597825

>mRNA_6721-protein ID=mRNA_6721-protein|Name=jgi.p|Nanoce1779_2|597825|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MPLPKGPLKSPFQYVPFSLGPRNCIGQRFGTMEASIILARLLREWDVTLL
DRAATVQRLELLTVRPDRLLCKLTPRKVSPGATPSGAAAFSSFFAVGAGM
TCGGDRNIAQACIP*
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mRNA from alignment at scaffold_18:542264..543427-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6721 ID=mRNA_6721|Name=jgi.p|Nanoce1779_2|597825|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp|location=Sequence derived from alignment at scaffold_18:542264..543427- (Nannochloropsis oceanica)
GGAGGGAGGAAAGGAGCGAGTGAGAGCTGTGAGCCTTGATGGGGGAGGGG
CGGGAGTGTCTCCGCCACGCACGCCTGTGTCCGTGCATCGGGCAGCAGCG
GTAGCCAATGCAGAAGGAGGTGCTCCAGCGACCTTCCTCTCTTCCCCTAA
ACCCGCTTCTTCTTCAACCCCTACGACCGGCAGCAGCAGCGGAGCCAGAA
GCAGCAGCAGCAGCAGTCATAGCAGGAGGGCCAGTACCAGCAGTATTCCT
ATGCCCCTCCCCAAAGGCCCGCTCAAGTCCCCATTTCAATATGTACCCTT
CTCCCTAGGCCCGCGGAATTGCATCGGGCAACGATTTGGGACCATGGAAG
CGAGCATTATATTAGCAAGGCTGTTGCGAGAGTGGGATGTAACGCTGCTA
GATCGAGCGGCCACGGTGCAGCGACTGGAGCTGCTGACAGTGAGGCCTGA
TAGGCTGCTCTGTAAATTGACACCAAGGAAGGTTTCCCCTGGTGCGACTC
CGTCCGGTGCTGCTGCTTTTTCCTCCTTTTTTGCAGTAGGGGCTGGAATG
ACTTGTGGGGGAGATAGAAATATAGCGCAGGCTTGCATTCCGTAAATTAA
GAGTGCCTGTGTCGAATGAGTCGGGAGAGACTGCACTATACCCGAGGTTG
GAAAATAGGGGGGAAAGCCGAAGAGGGGAAGAGGCGGAAGGACAGAGGAA
GAATGAAGTAATGAGTCAAATTTTTCGACTCGACTTATTTTTCTTTTGAA
TGAAATAAATATGTAAGCCCTGTATGTAAAGGAAAAGTGCAGGCTATTGT
AAAGTACTCAAACAAAAATATGACGCGGTTGTTAAAATAAAAGCTGACGA
TAAGCACGAGAAGACGAGGAGGAGCGACACTAATGTGACGGTGGTCGAAA
GCAGCCTGACAACATCGGGAGGAAAGATTTATACAGCAAATAAGTCAAAC
ACAAGTTAATAATACATTTAAAGTGAAATAATATGTGTATGTGCGTATAC
ATTCGAGCCATTTTCACAAAGTACAAACAAAGAAAGAAATGGGTGGATGG
AATGACATCCTCTATGGCGCAGTCACTGATAATGTAATGAAATGCAGTCC
AACAGGTGAGGGCACACCATATCAAATCAGATCAAACAAAGAACAAATTA
TGATGAGTATTAGC
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Coding sequence (CDS) from alignment at scaffold_18:542264..543427-

>mRNA_6721 ID=mRNA_6721|Name=jgi.p|Nanoce1779_2|597825|organism=Nannochloropsis oceanica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_18:542264..543427- (Nannochloropsis oceanica)
ATGCCCCTCCCCAAAGGCCCGCTCAAGTCCCCATTTCAATATGTACCCTT
CTCCCTAGGCCCGCGGAATTGCATCGGGCAACGATTTGGGACCATGGAAG
CGAGCATTATATTAGCAAGGCTGTTGCGAGAGTGGGATGTAACGCTGCTA
GATCGAGCGGCCACGGTGCAGCGACTGGAGCTGCTGACAGTGAGGCCTGA
TAGGCTGCTCTGTAAATTGACACCAAGGAAGGTTTCCCCTGGTGCGACTC
CGTCCGGTGCTGCTGCTTTTTCCTCCTTTTTTGCAGTAGGGGCTGGAATG
ACTTGTGGGGGAGATAGAAATATAGCGCAGGCTTGCATTCCGTAA
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Synonyms
Publications