jgi.p|Nanoce1779_2|597823, mRNA_6720 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597823
Unique NamemRNA_6720
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length993
Alignment locationscaffold_18:541176..542168 +

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Properties
Property NameValue
TranscriptId597909
TrackFilteredModels2
ProteinId597823
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:541176..542168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597823gene_6720Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597823mRNA_6720-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6720CDS_6720Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6720 ID=mRNA_6720|Name=jgi.p|Nanoce1779_2|597823|organism=Nannochloropsis oceanica|type=mRNA|length=993bp
CAGGCAGCTGCAGGCAGCACCAGCAACGGGAGAACCACCACCAGCAGCCC
CCCCCTGCGGCTGGTAGTCGCAATAGCAAGGTTAATCTCTCCACCAATCA
TCCTTGCACTTCACTCTCTCCATCACCAGTAACGTAATGCTGGCGGGCAA
GCGGTGTCTGGTGGTAGGCCTGGCCAACCACAGATCCCTGGCGTGGGGAT
GCGCTCAAGCATGGCGAGCGGCAGGGGCTCAAGTCCTGGTGAGCTCCCTT
CCTCGATTCCAGCCTTCAATAGCCAAGCTCCTGGCGTCCTCTTGGCCCGA
AGCCAAGGCGCAGGGGCCGGAGCAATATAGCTTGGCGTGCGACGTAATGG
ACCCCGAGAGCGTCAAGGCCATGATGGCACGAGTATCCGAACGCTTTGAT
GGTGAGCTGGACGTCTTGCTTCATGCCGTGGCGTATGCCTCAGCACCGGC
TATGAACGGTCCTTTTATAGGGACCACGGCAGAAGACTTCGCCCAGGCTC
ATCTTGTGAGCTCTCATTCCTTGATCACTCTCGCCCGGGAAGCCCTTCCA
CTCCTCACAGATCCCAAACGTGATTCCGAACCAACGCCTTCAGCAATAAG
AGCAAGAAAGAGGAACAGCAGCATCCTCACCCTCTCCTACCTTGGTGCCC
AACGCGCCATCCTCCCCTATAAAGTCATGGGACCCGCCAAAGCCTCCCTC
GAAGCCACCGTCCGTCTCTTGGCCGCTGAACTCGGCCCTCCCCCTAATCA
GGTACGCGTGAATGCCGTAGGTCCTGGACCGATTCACACGTTGTCTGCCA
GGGGAATACCGGGCTTTGGGGAGATGTGTAAAGAGGCTGCGGCACGAGCA
CCGTTGAGAAGAAATGCGGATTTGGAAGACGTAGGGGGGGCGGCAGTATT
TTTGGCGAGTGATGCAGCGAAGGCAATTACCGGGCAGGTCTTGTATGTGG
ATGGGGGGTTGAACGTCATGTGATTATGCTTTGATTGAGCGGG
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protein sequence of jgi.p|Nanoce1779_2|597823

>mRNA_6720-protein ID=mRNA_6720-protein|Name=jgi.p|Nanoce1779_2|597823|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MLAGKRCLVVGLANHRSLAWGCAQAWRAAGAQVLVSSLPRFQPSIAKLLA
SSWPEAKAQGPEQYSLACDVMDPESVKAMMARVSERFDGELDVLLHAVAY
ASAPAMNGPFIGTTAEDFAQAHLVSSHSLITLAREALPLLTDPKRDSEPT
PSAIRARKRNSSILTLSYLGAQRAILPYKVMGPAKASLEATVRLLAAELG
PPPNQVRVNAVGPGPIHTLSARGIPGFGEMCKEAAARAPLRRNADLEDVG
GAAVFLASDAAKAITGQVLYVDGGLNVM*
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mRNA from alignment at scaffold_18:541176..542168+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6720 ID=mRNA_6720|Name=jgi.p|Nanoce1779_2|597823|organism=Nannochloropsis oceanica|type=mRNA|length=993bp|location=Sequence derived from alignment at scaffold_18:541176..542168+ (Nannochloropsis oceanica)
CAGGCAGCTGCAGGCAGCACCAGCAACGGGAGAACCACCACCAGCAGCCC
CCCCCTGCGGCTGGTAGTCGCAATAGCAAGGTTAATCTCTCCACCAATCA
TCCTTGCACTTCACTCTCTCCATCACCAGTAACGTAATGCTGGCGGGCAA
GCGGTGTCTGGTGGTAGGCCTGGCCAACCACAGATCCCTGGCGTGGGGAT
GCGCTCAAGCATGGCGAGCGGCAGGGGCTCAAGTCCTGGTGAGCTCCCTT
CCTCGATTCCAGCCTTCAATAGCCAAGCTCCTGGCGTCCTCTTGGCCCGA
AGCCAAGGCGCAGGGGCCGGAGCAATATAGCTTGGCGTGCGACGTAATGG
ACCCCGAGAGCGTCAAGGCCATGATGGCACGAGTATCCGAACGCTTTGAT
GGTGAGCTGGACGTCTTGCTTCATGCCGTGGCGTATGCCTCAGCACCGGC
TATGAACGGTCCTTTTATAGGGACCACGGCAGAAGACTTCGCCCAGGCTC
ATCTTGTGAGCTCTCATTCCTTGATCACTCTCGCCCGGGAAGCCCTTCCA
CTCCTCACAGATCCCAAACGTGATTCCGAACCAACGCCTTCAGCAATAAG
AGCAAGAAAGAGGAACAGCAGCATCCTCACCCTCTCCTACCTTGGTGCCC
AACGCGCCATCCTCCCCTATAAAGTCATGGGACCCGCCAAAGCCTCCCTC
GAAGCCACCGTCCGTCTCTTGGCCGCTGAACTCGGCCCTCCCCCTAATCA
GGTACGCGTGAATGCCGTAGGTCCTGGACCGATTCACACGTTGTCTGCCA
GGGGAATACCGGGCTTTGGGGAGATGTGTAAAGAGGCTGCGGCACGAGCA
CCGTTGAGAAGAAATGCGGATTTGGAAGACGTAGGGGGGGCGGCAGTATT
TTTGGCGAGTGATGCAGCGAAGGCAATTACCGGGCAGGTCTTGTATGTGG
ATGGGGGGTTGAACGTCATGTGATTATGCTTTGATTGAGCGGG
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Coding sequence (CDS) from alignment at scaffold_18:541176..542168+

>mRNA_6720 ID=mRNA_6720|Name=jgi.p|Nanoce1779_2|597823|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at scaffold_18:541176..542168+ (Nannochloropsis oceanica)
ATGCTGGCGGGCAAGCGGTGTCTGGTGGTAGGCCTGGCCAACCACAGATC
CCTGGCGTGGGGATGCGCTCAAGCATGGCGAGCGGCAGGGGCTCAAGTCC
TGGTGAGCTCCCTTCCTCGATTCCAGCCTTCAATAGCCAAGCTCCTGGCG
TCCTCTTGGCCCGAAGCCAAGGCGCAGGGGCCGGAGCAATATAGCTTGGC
GTGCGACGTAATGGACCCCGAGAGCGTCAAGGCCATGATGGCACGAGTAT
CCGAACGCTTTGATGGTGAGCTGGACGTCTTGCTTCATGCCGTGGCGTAT
GCCTCAGCACCGGCTATGAACGGTCCTTTTATAGGGACCACGGCAGAAGA
CTTCGCCCAGGCTCATCTTGTGAGCTCTCATTCCTTGATCACTCTCGCCC
GGGAAGCCCTTCCACTCCTCACAGATCCCAAACGTGATTCCGAACCAACG
CCTTCAGCAATAAGAGCAAGAAAGAGGAACAGCAGCATCCTCACCCTCTC
CTACCTTGGTGCCCAACGCGCCATCCTCCCCTATAAAGTCATGGGACCCG
CCAAAGCCTCCCTCGAAGCCACCGTCCGTCTCTTGGCCGCTGAACTCGGC
CCTCCCCCTAATCAGGTACGCGTGAATGCCGTAGGTCCTGGACCGATTCA
CACGTTGTCTGCCAGGGGAATACCGGGCTTTGGGGAGATGTGTAAAGAGG
CTGCGGCACGAGCACCGTTGAGAAGAAATGCGGATTTGGAAGACGTAGGG
GGGGCGGCAGTATTTTTGGCGAGTGATGCAGCGAAGGCAATTACCGGGCA
GGTCTTGTATGTGGATGGGGGGTTGAACGTCATGTGA
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Synonyms
Publications