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Properties
| Property Name | Value |
|---|
| TranscriptId | 573827 |
| Track | FilteredModels2 |
| ProteinId | 573741 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:156327..158450 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_672 ID=mRNA_672|Name=jgi.p|Nanoce1779_2|573741|organism=Nannochloropsis oceanica|type=mRNA|length=1945bp
AGAAAGAGGCCTAAGTAAAGATAAGATGGACGGGCGTCGGGTAGGGGTCC
TGGGTGGTGGGCAACTGGGCCGCATGATGGCCGAGGCGGGGCATCGGCTA
GGAATTCAGCTCAACATCCTCGATCCTGCCGGCAAGGACTCCCCCGCCGG
CCAAGTGGCAGGCACAAGCATCAATGGCAGCTTCCGGGACGAGGACAAGG
TCTTAGAGCTCGCTGGTATATCCGATCTCCTCACCGTTGAAATCGAGCAC
ATCAACTGCGATGCGCTAGATGCTGCAATCGCCCAGGGCACCCCAGTTCA
ACCCTTGCCTCAAACTTTAAGGGTCATTCAGGATAAGTACGCACAGAAGG
TTTATTTGGCGGCGCGTGGGATTCCGTTGCCGGAATTTTGTGATGTGCCC
AATTTGGAGGCTGCTTATGCGGCGGGACGGGAGTTTGGATATCCTCTGAT
GTTGAAAGCGAAGCGACTAGCATATGATGGGAAGGGGAATGCGGTCGCCA
AGACGAAAGAGGACGTCGCTGGGGCGTTCGAGCAGTTGGGGGGCGGTGAT
GTGTACGCTGAGAAATGGGCGCCATTTGTGAAGGAACTGGCCGTGATGGT
CGTGAGATCGGCGTCGGAAGTCCGACCGTACCCTGTTGTGGAGACGGTGC
AAAAAGATAATATCTGCCATACCACCATCACGCCTGCCCAGCTCTCTGCC
ACAGCGAGCGACAAGGCTTTGGCGGTGGCCTCGCAGGCAATTGCGGCGTT
AGAGGGGGCAGGTATCTTTGGGGTGGAGTTGTTTCTGATGCCTGACGACA
CGATTTTGTTGAATGAGATCGCCCCAAGGCCGCATAATTCTGGCCATTAC
ACAATAGAGGCCTGTGAAACCGATCAATTTGAAAACCACTTGCGGGCCGT
TCTGGACTTGCCGCTTGGGGGTACGGCATTGAAGGTGGGGGCGGCGGTGA
TGTTGAATATATTGGGGGAGGGCAACACGCAGGAGACGAAGAAGATGATG
CAAAAAGCCCTGGCGATTCCTGGAGCGGGGATACATTGGTATGGAAAGGG
GGAGGCGAAGAAGGGGAGGAAGATGGCACATATCACCTTCACAGGACACT
CTCTTTTTGAAATCAAGGCCCGTACGGCAGTATATGGGGCATTCCTTGGT
TCCTTGTCACTCGCACCGTCGGTGGGGATAATCATGGGGTCTGATTCGGA
CCTTCCCTGCATGAAGGACGCGGCTGACATCCTGGAGACCTTTGCAGTGC
CGTACGAGCTTACCATCGTTTCGGCCCATCGTACGCCTACCCGGATGTAC
ACATATGCCCAAGAAGCCGCACAACGAGGGCTGCAAGTCATAATTGCCGG
GGCAGGGGGCGCCGCGCATTTACCTGGGATGGTGGCCGCTTTGACCCCTC
TCCCCGTCATTGGTGTTCCTGTCAAGACAGCGGCGCTGTCGGGCGTGGAC
TCGCTGTATTCGATTTGTCAGATGCCGAAAGGAATCCCGGTGGCGACGGT
CGCAATTGGAAACGCTGCGAATGCTGGGTTGTTGGCTGTGAGGATTTTGG
GGAGTGCCAGGCCGGAATTGTTGAACAAGATGGAGGTCTGGTTGAGAGGG
CAGGAAGGGCAGGTGCTTGCGAAGGCGGAAAAGCTGGAAAAAGGTGGGTG
GCGGGAGTATTTACATGGAGCCAAGTAGGGGGGAAAAGAGGGAGGGATAG
GGATGGTGATGATTTTGATGGTGGTCATGATGAAGATGATGAGGATGTGC
GTACTCGAAAGGGAAAATTTTGCGGACGCGATATTGATTCATTTAGATAT
TTTATGATTTGAACGAAAATTATACTATGTTGGAAGAGGACGAAGATCAG
GAAGACAGTCGGACAAGGCAAATGCTTCCTTCGCCGAAAGAGCACACCAA
AGAAGAGAAAATAAGAAAGCAAAATAGCGGAAAAGGAAAAACGTA back to topprotein sequence of jgi.p|Nanoce1779_2|573741 >mRNA_672-protein ID=mRNA_672-protein|Name=jgi.p|Nanoce1779_2|573741|organism=Nannochloropsis oceanica|type=polypeptide|length=551bp
MDGRRVGVLGGGQLGRMMAEAGHRLGIQLNILDPAGKDSPAGQVAGTSIN
GSFRDEDKVLELAGISDLLTVEIEHINCDALDAAIAQGTPVQPLPQTLRV
IQDKYAQKVYLAARGIPLPEFCDVPNLEAAYAAGREFGYPLMLKAKRLAY
DGKGNAVAKTKEDVAGAFEQLGGGDVYAEKWAPFVKELAVMVVRSASEVR
PYPVVETVQKDNICHTTITPAQLSATASDKALAVASQAIAALEGAGIFGV
ELFLMPDDTILLNEIAPRPHNSGHYTIEACETDQFENHLRAVLDLPLGGT
ALKVGAAVMLNILGEGNTQETKKMMQKALAIPGAGIHWYGKGEAKKGRKM
AHITFTGHSLFEIKARTAVYGAFLGSLSLAPSVGIIMGSDSDLPCMKDAA
DILETFAVPYELTIVSAHRTPTRMYTYAQEAAQRGLQVIIAGAGGAAHLP
GMVAALTPLPVIGVPVKTAALSGVDSLYSICQMPKGIPVATVAIGNAANA
GLLAVRILGSARPELLNKMEVWLRGQEGQVLAKAEKLEKGGWREYLHGAK
* back to topmRNA from alignment at scaffold_2:156327..158450- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_672 ID=mRNA_672|Name=jgi.p|Nanoce1779_2|573741|organism=Nannochloropsis oceanica|type=mRNA|length=2124bp|location=Sequence derived from alignment at scaffold_2:156327..158450- (Nannochloropsis oceanica)
AGAAAGAGGCCTAAGTAAAGATAAGATGGACGGGCGTCGGGTAGGGGTCC
TGGGTGGTGGGCAACTGGGCCGCATGATGGCCGAGGCGGGGCATCGGCTA
GGAATTCAGCTCAACATCCTCGATCCTGGTACGTACGGGGGGGAGGTGGA
CAAGATGGGGAAAAAGACTTGATCGCAAAGTCTCTCCTTTCTCTTTTAAT
TTGAGCTCTATCCTGAGGCCCCATGTTGTTAAGTCCCATTTTCCGCCCAA
CAAGCCCTTTCACCCCCTCCCCTCCCGTTTATTTTTGGACCCATCATCAC
TTCACAGCCGGCAAGGACTCCCCCGCCGGCCAAGTGGCAGGCACAAGCAT
CAATGGCAGCTTCCGGGACGAGGACAAGGTCTTAGAGCTCGCTGGTATAT
CCGATCTCCTCACCGTTGAAATCGAGCACATCAACTGCGATGCGCTAGAT
GCTGCAATCGCCCAGGGCACCCCAGTTCAACCCTTGCCTCAAACTTTAAG
GGTCATTCAGGATAAGTACGCACAGAAGGTTTATTTGGCGGCGCGTGGGA
TTCCGTTGCCGGAATTTTGTGATGTGCCCAATTTGGAGGCTGCTTATGCG
GCGGGACGGGAGTTTGGATATCCTCTGATGTTGAAAGCGAAGCGACTAGC
ATATGATGGGAAGGGGAATGCGGTCGCCAAGACGAAAGAGGACGTCGCTG
GGGCGTTCGAGCAGTTGGGGGGCGGTGATGTGTACGCTGAGAAATGGGCG
CCATTTGTGAAGGAACTGGCCGTGATGGTCGTGAGATCGGCGTCGGAAGT
CCGACCGTACCCTGTTGTGGAGACGGTGCAAAAAGATAATATCTGCCATA
CCACCATCACGCCTGCCCAGCTCTCTGCCACAGCGAGCGACAAGGCTTTG
GCGGTGGCCTCGCAGGCAATTGCGGCGTTAGAGGGGGCAGGTATCTTTGG
GGTGGAGTTGTTTCTGATGCCTGACGACACGATTTTGTTGAATGAGATCG
CCCCAAGGCCGCATAATTCTGGCCATTACACAATAGAGGCCTGTGAAACC
GATCAATTTGAAAACCACTTGCGGGCCGTTCTGGACTTGCCGCTTGGGGG
TACGGCATTGAAGGTGGGGGCGGCGGTGATGTTGAATATATTGGGGGAGG
GCAACACGCAGGAGACGAAGAAGATGATGCAAAAAGCCCTGGCGATTCCT
GGAGCGGGGATACATTGGTATGGAAAGGGGGAGGCGAAGAAGGGGAGGAA
GATGGCACATATCACCTTCACAGGACACTCTCTTTTTGAAATCAAGGCCC
GTACGGCAGTATATGGGGCATTCCTTGGTTCCTTGTCACTCGCACCGTCG
GTGGGGATAATCATGGGGTCTGATTCGGACCTTCCCTGCATGAAGGACGC
GGCTGACATCCTGGAGACCTTTGCAGTGCCGTACGAGCTTACCATCGTTT
CGGCCCATCGTACGCCTACCCGGATGTACACATATGCCCAAGAAGCCGCA
CAACGAGGGCTGCAAGTCATAATTGCCGGGGCAGGGGGCGCCGCGCATTT
ACCTGGGATGGTGGCCGCTTTGACCCCTCTCCCCGTCATTGGTGTTCCTG
TCAAGACAGCGGCGCTGTCGGGCGTGGACTCGCTGTATTCGATTTGTCAG
ATGCCGAAAGGAATCCCGGTGGCGACGGTCGCAATTGGAAACGCTGCGAA
TGCTGGGTTGTTGGCTGTGAGGATTTTGGGGAGTGCCAGGCCGGAATTGT
TGAACAAGATGGAGGTCTGGTTGAGAGGGCAGGAAGGGCAGGTGCTTGCG
AAGGCGGAAAAGCTGGAAAAAGGTGGGTGGCGGGAGTATTTACATGGAGC
CAAGTAGGGGGGAAAAGAGGGAGGGATAGGGATGGTGATGATTTTGATGG
TGGTCATGATGAAGATGATGAGGATGTGCGTACTCGAAAGGGAAAATTTT
GCGGACGCGATATTGATTCATTTAGATATTTTATGATTTGAACGAAAATT
ATACTATGTTGGAAGAGGACGAAGATCAGGAAGACAGTCGGACAAGGCAA
ATGCTTCCTTCGCCGAAAGAGCACACCAAAGAAGAGAAAATAAGAAAGCA
AAATAGCGGAAAAGGAAAAACGTA back to topCoding sequence (CDS) from alignment at scaffold_2:156327..158450- >mRNA_672 ID=mRNA_672|Name=jgi.p|Nanoce1779_2|573741|organism=Nannochloropsis oceanica|type=CDS|length=3306bp|location=Sequence derived from alignment at scaffold_2:156327..158450- (Nannochloropsis oceanica)
CCGGCAAGGACTCCCCCGCCGGCCAAGTGGCAGGCACAAGCATCAATGGC
AGCTTCCGGGACGAGGACAAGGTCTTAGAGCTCGCTGGTATATCCGATCT
CCTCACCGTTGAAATCGAGCACATCAACTGCGATGCGCTAGATGCTGCAA
TCGCCCAGGGCACCCCAGTTCAACCCTTGCCTCAAACTTTAAGGGTCATT
CAGGATAAGTACGCACAGAAGGTTTATTTGGCGGCGCGTGGGATTCCGTT
GCCGGAATTTTGTGATGTGCCCAATTTGGAGGCTGCTTATGCGGCGGGAC
GGGAGTTTGGATATCCTCTGATGTTGAAAGCGAAGCGACTAGCATATGAT
GGGAAGGGGAATGCGGTCGCCAAGACGAAAGAGGACGTCGCTGGGGCGTT
CGAGCAGTTGGGGGGCGGTGATGTGTACGCTGAGAAATGGGCGCCATTTG
TGAAGGAACTGGCCGTGATGGTCGTGAGATCGGCGTCGGAAGTCCGACCG
TACCCTGTTGTGGAGACGGTGCAAAAAGATAATATCTGCCATACCACCAT
CACGCCTGCCCAGCTCTCTGCCACAGCGAGCGACAAGGCTTTGGCGGTGG
CCTCGCAGGCAATTGCGGCGTTAGAGGGGGCAGGTATCTTTGGGGTGGAG
TTGTTTCTGATGCCTGACGACACGATTTTGTTGAATGAGATCGCCCCAAG
GCCGCATAATTCTGGCCATTACACAATAGAGGCCTGTGAAACCGATCAAT
TTGAAAACCACTTGCGGGCCGTTCTGGACTTGCCGCTTGGGGGTACGGCA
TTGAAGGTGGGGGCGGCGGTGATGTTGAATATATTGGGGGAGGGCAACAC
GCAGGAGACGAAGAAGATGATGCAAAAAGCCCTGGCGATTCCTGGAGCGG
GGATACATTGGTATGGAAAGGGGGAGGCGAAGAAGGGGAGGAAGATGGCA
CATATCACCTTCACAGGACACTCTCTTTTTGAAATCAAGGCCCGTACGGC
AGTATATGGGGCATTCCTTGGTTCCTTGTCACTCGCACCGTCGGTGGGGA
TAATCATGGGGTCTGATTCGGACCTTCCCTGCATGAAGGACGCGGCTGAC
ATCCTGGAGACCTTTGCAGTGCCGTACGAGCTTACCATCGTTTCGGCCCA
TCGTACGCCTACCCGGATGTACACATATGCCCAAGAAGCCGCACAACGAG
GGCTGCAAGTCATAATTGCCGGGGCAGGGGGCGCCGCGCATTTACCTGGG
ATGGTGGCCGCTTTGACCCCTCTCCCCGTCATTGGTGTTCCTGTCAAGAC
AGCGGCGCTGTCGGGCGTGGACTCGCTGTATTCGATTTGTCAGATGCCGA
AAGGAATCCCGGTGGCGACGGTCGCAATTGGAAACGCTGCGAATGCTGGG
TTGTTGGCTGTGAGGATTTTGGGGAGTGCCAGGCCGGAATTGTTGAACAA
GATGGAGGTCTGGTTGAGAGGGCAGGAAGGGCAGGTGCTTGCGAAGGCGG
AAAAGCTGGAAAAAGGTGGGTGGCGGGAGTATTTACATGGAGCCAAGTAG
ATGGACGGGCGTCGGGTAGGGGTCCTGGGTGGTGGGCAACTGGGCCGCAT
GATGGCCGAGGCGGGGCATCGGCTAGGAATTCAGCTCAACATCCTCGATC
CTGCCGGCAAGGACTCCCCCGCCGGCCAAGTGGCAGGCACAAGCATCAAT
GGCAGCTTCCGGGACGAGGACAAGGTCTTAGAGCTCGCTGGTATATCCGA
TCTCCTCACCGTTGAAATCGAGCACATCAACTGCGATGCGCTAGATGCTG
CAATCGCCCAGGGCACCCCAGTTCAACCCTTGCCTCAAACTTTAAGGGTC
ATTCAGGATAAGTACGCACAGAAGGTTTATTTGGCGGCGCGTGGGATTCC
GTTGCCGGAATTTTGTGATGTGCCCAATTTGGAGGCTGCTTATGCGGCGG
GACGGGAGTTTGGATATCCTCTGATGTTGAAAGCGAAGCGACTAGCATAT
GATGGGAAGGGGAATGCGGTCGCCAAGACGAAAGAGGACGTCGCTGGGGC
GTTCGAGCAGTTGGGGGGCGGTGATGTGTACGCTGAGAAATGGGCGCCAT
TTGTGAAGGAACTGGCCGTGATGGTCGTGAGATCGGCGTCGGAAGTCCGA
CCGTACCCTGTTGTGGAGACGGTGCAAAAAGATAATATCTGCCATACCAC
CATCACGCCTGCCCAGCTCTCTGCCACAGCGAGCGACAAGGCTTTGGCGG
TGGCCTCGCAGGCAATTGCGGCGTTAGAGGGGGCAGGTATCTTTGGGGTG
GAGTTGTTTCTGATGCCTGACGACACGATTTTGTTGAATGAGATCGCCCC
AAGGCCGCATAATTCTGGCCATTACACAATAGAGGCCTGTGAAACCGATC
AATTTGAAAACCACTTGCGGGCCGTTCTGGACTTGCCGCTTGGGGGTACG
GCATTGAAGGTGGGGGCGGCGGTGATGTTGAATATATTGGGGGAGGGCAA
CACGCAGGAGACGAAGAAGATGATGCAAAAAGCCCTGGCGATTCCTGGAG
CGGGGATACATTGGTATGGAAAGGGGGAGGCGAAGAAGGGGAGGAAGATG
GCACATATCACCTTCACAGGACACTCTCTTTTTGAAATCAAGGCCCGTAC
GGCAGTATATGGGGCATTCCTTGGTTCCTTGTCACTCGCACCGTCGGTGG
GGATAATCATGGGGTCTGATTCGGACCTTCCCTGCATGAAGGACGCGGCT
GACATCCTGGAGACCTTTGCAGTGCCGTACGAGCTTACCATCGTTTCGGC
CCATCGTACGCCTACCCGGATGTACACATATGCCCAAGAAGCCGCACAAC
GAGGGCTGCAAGTCATAATTGCCGGGGCAGGGGGCGCCGCGCATTTACCT
GGGATGGTGGCCGCTTTGACCCCTCTCCCCGTCATTGGTGTTCCTGTCAA
GACAGCGGCGCTGTCGGGCGTGGACTCGCTGTATTCGATTTGTCAGATGC
CGAAAGGAATCCCGGTGGCGACGGTCGCAATTGGAAACGCTGCGAATGCT
GGGTTGTTGGCTGTGAGGATTTTGGGGAGTGCCAGGCCGGAATTGTTGAA
CAAGATGGAGGTCTGGTTGAGAGGGCAGGAAGGGCAGGTGCTTGCGAAGG
CGGAAAAGCTGGAAAAAGGTGGGTGGCGGGAGTATTTACATGGAGCCAAG
TAGATGGACGGGCGTCGGGTAGGGGTCCTGGGTGGTGGGCAACTGGGCCG
CATGATGGCCGAGGCGGGGCATCGGCTAGGAATTCAGCTCAACATCCTCG
ATCCTG back to top
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