Properties
| Property Name | Value |
|---|
| TranscriptId | 672660 |
| Track | FilteredModels2 |
| ProteinId | 672574 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:539043..542168 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6719 ID=mRNA_6719|Name=jgi.p|Nanoce1779_2|672574|organism=Nannochloropsis oceanica|type=mRNA|length=2741bp
CCCGCTCAATCAAAGCATAATCACATGACGTTCAACCCCCCATCCACATA
CAAGACCTGCCCGGTAATTGCCTTCGCTGCATCACTCGCCAAAAATACTG
CCGCCCCCCCTACGTCTTCCAAATCCGCATTTCTTCTCAACGGTGCTCGT
GCCGCAGCCTCTTTACACATCTCCCCAAAGCCCGGTATTCCCCTGGCAGA
CAACGTGTGAATCGGTCCAGGACCTACGGCATTCACGCGTACCTGATTAG
GGGGAGGGCCGAGTTCAGCGGCCAAGAGACGGACGGTGGCTTCGAGGGAG
GCTTTGGCGGGTCCCATGACTTTATAGGGGAGGATGGCGCGTTGGGCACC
AAGGTAGGAGAGGGTGAGGATGCTGCTGTTCCTCTTTCTTGCTCTTATTG
CTGAAGGCGTTGGTTCGGAATCACGTTTGGGATCTGTGAGGAGTGGAAGG
GCTTCCCGGGCGAGAGTGATCAAGGAATGAGAGCTCACAAGATGAGCCTG
GGCGAAGTCTTCTGCCGTGGTCCCTATAAAAGGACCGTTCATAGCCGGTG
CTGAGGCATACGCCACGGCATGAAGCAAGACGTCCAGCTCACCATCAAAG
CGTTCGGATACTCGTGCCATCATGGCCTTGACGCTCTCGGGGTCCATTAC
GTCGCACGCCAAGCTATATTGCTCCGGCCCCTGCGCCTTGGCTTCGGGCC
AAGAGGACGCCAGGAGCTTGGCTATTGAAGGCTGGAATCGAGGAAGGGAG
CTCACCAGGACTTGAGCCCCTGCCGCTCGCCATGCTTGAGCGCATCCCCA
CGCCAGGGATCTGTGGTTGGCCAGGCCTACCACCAGACACCGCTTGCCCG
CCAGCATTACGTTACTGGTGATGGAGAGAGTGAAGTGCAAGGATGATTGG
TGGAGAGATTAACCTTGCTATTGCGACTACCAGCCGCAGGGGGGGGCTGC
TGGTGGTGGTTCTCCCGTTGCTGGTGCTGCCTGCAGCTGCCGTATCACTT
TATGCAATAGAGCTACATGTACCGTCACGTCGGTCGACGTTTTGCAGCTT
CCACCTTTATCTCTTCCTCGTCTCGGACCGCTGACGCCCGCACTTGCCTC
CCCCACTCCCCCTCCCTCCCCCGTCTTCCCATGCTCCTCGCGGCCGCCGC
TGCCTCGGCCACCATGCACACTACGCGACTTCCTTCCCCGCGTGCACGGG
AGATGACCACAAATAGCTCGGCCACAGCCCATGCCGCGCACAAGGCCCAC
GCCGCCTCGGCCGAGAGTGCGAGCGAGTTTCTGGACGACCCAGACCTGCT
TCGAGACCAAGCCTACGTGAATGGGCAATGGGTGGGCAGCGCCACGGGTG
CGAACACGTACGAAGTCAAAGACCCGGCTACACACGTTGTCATTGCCAAA
GTCCCCTCCATGGGGGCGGCCGACACGCGGGTTGCCATCGACGCGGCCGC
CGCGGCCTGGAACGGGTGGCGACACAAGACAGGCAAAGAACGAGGAGATG
TGCTCCGACGGTGGCATGATCTGATGCAGCTCCACATGACAGACCTGGCC
AAAATTCTAACATTAGAAAATGGAAAGCCCTTAGCGGAATCTCGGGGCGA
GATTGGGTATGCGGCGAGTTTTGTCGAGTTTTATGCCGAGGAAGCCAAGC
GGACATATGGTGAAATGATCCCTTCCCCTACCCCTGGTCGACGGCTCGTA
ACCGTCAAGCAACCGGTCGGTGTGGCCGCCCTCATTTCCCCCTGGAACTT
TCCCAGTGCCATGATCACACGCAAGGCCGCCCCTGCCCTCGCGGCGGGCT
GTCCGGTGGTCATTAAGCCTGCTGAGGACACGCCTTTATCTGCCTTGGCC
TTGGCAGAGCTCGCTGAACGTGCCGGCGTCCCTCCAGGGGTCCTGAACGT
GGTCACCTGCCCGAGAAAGCATGCAGCAGACGTGGGGCTTGAATTAAGCA
CCAACAGGGTCGTGCGTAAGGTGTCCTTCACGGGTTCCACGGCGGTGGGA
AAGATCTTGATGAGGGACTGCGCGTCGACCGTGAAGAAGCTTTCGCTTGA
ATTGGGGGGGAATGCCCCGTTGCTTGTGTTTGATGATGCGAACCTCGAAC
ACGCCTTGAATGGTGTGATAGTAGCCAAGTTCCGCAATGCGGGCCAGACG
TGCGTGTCTCCCAACCGACTGTTGGTCCAGGCGGGGATTTATGAGGAGTT
CGTCACGCGCCTGGCGGAGCGGGTGTCGGAATTGCACGTTGGGCATGGGC
TGCAGCCGGGTGCACAGGTCGGCCCCTTGATCAACCACGCGGCGCTTCAA
AAGGTTCAAGATCACGTGAGCGACGCGGTGCAAAAAGGCGCAAAACTTCT
GACTGGGGGAGAGGTCCACGCGTTGGGAGGCACGTTTTTTGAGCCCACGG
TATTGACAAATTGTAAGGATGATATGTCGGTGTTTAAAGAAGAGACCTTT
GGCCCTGTCTGTTCTGTGTTCCGTTTTGAGAGTGAGGAGGAGGGGGTCAG
GATGGCCAACAGCACGGAATTTGGCTTAGCCGCCTATGTGTTTACAGGGG
AGATGGGTAAAGGGTGGAGGGTGGCAGAGGGGATCGAGGCGGGTATGGTC
GGAGTGAATGAGGGCATGATCTCGACGGCGGTGGCGCCGTTTGGAGGGGT
GAAAGAAAGCGGGCTGGGGAGGGAGGGAGCGAGGGGCGGGATTGACGAGT
ATATGGAGACGAAGTATCTGTGTCTGGGCGGGATTGGATAG back to topprotein sequence of jgi.p|Nanoce1779_2|672574 >mRNA_6719-protein ID=mRNA_6719-protein|Name=jgi.p|Nanoce1779_2|672574|organism=Nannochloropsis oceanica|type=polypeptide|length=575bp
MYRHVGRRFAASTFISSSSRTADARTCLPHSPSLPRLPMLLAAAAASATM
HTTRLPSPRAREMTTNSSATAHAAHKAHAASAESASEFLDDPDLLRDQAY
VNGQWVGSATGANTYEVKDPATHVVIAKVPSMGAADTRVAIDAAAAAWNG
WRHKTGKERGDVLRRWHDLMQLHMTDLAKILTLENGKPLAESRGEIGYAA
SFVEFYAEEAKRTYGEMIPSPTPGRRLVTVKQPVGVAALISPWNFPSAMI
TRKAAPALAAGCPVVIKPAEDTPLSALALAELAERAGVPPGVLNVVTCPR
KHAADVGLELSTNRVVRKVSFTGSTAVGKILMRDCASTVKKLSLELGGNA
PLLVFDDANLEHALNGVIVAKFRNAGQTCVSPNRLLVQAGIYEEFVTRLA
ERVSELHVGHGLQPGAQVGPLINHAALQKVQDHVSDAVQKGAKLLTGGEV
HALGGTFFEPTVLTNCKDDMSVFKEETFGPVCSVFRFESEEEGVRMANST
EFGLAAYVFTGEMGKGWRVAEGIEAGMVGVNEGMISTAVAPFGGVKESGL
GREGARGGIDEYMETKYLCLGGIG* back to topmRNA from alignment at scaffold_18:539043..542168- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6719 ID=mRNA_6719|Name=jgi.p|Nanoce1779_2|672574|organism=Nannochloropsis oceanica|type=mRNA|length=3126bp|location=Sequence derived from alignment at scaffold_18:539043..542168- (Nannochloropsis oceanica)
CCCGCTCAATCAAAGCATAATCACATGACGTTCAACCCCCCATCCACATA
CAAGACCTGCCCGGTAATTGCCTTCGCTGCATCACTCGCCAAAAATACTG
CCGCCCCCCCTACGTCTTCCAAATCCGCATTTCTTCTCAACGGTGCTCGT
GCCGCAGCCTCTTTACACATCTCCCCAAAGCCCGGTATTCCCCTGGCAGA
CAACGTGTGAATCGGTCCAGGACCTACGGCATTCACGCGTACCTGATTAG
GGGGAGGGCCGAGTTCAGCGGCCAAGAGACGGACGGTGGCTTCGAGGGAG
GCTTTGGCGGGTCCCATGACTTTATAGGGGAGGATGGCGCGTTGGGCACC
AAGGTAGGAGAGGGTGAGGATGCTGCTGTTCCTCTTTCTTGCTCTTATTG
CTGAAGGCGTTGGTTCGGAATCACGTTTGGGATCTGTGAGGAGTGGAAGG
GCTTCCCGGGCGAGAGTGATCAAGGAATGAGAGCTCACAAGATGAGCCTG
GGCGAAGTCTTCTGCCGTGGTCCCTATAAAAGGACCGTTCATAGCCGGTG
CTGAGGCATACGCCACGGCATGAAGCAAGACGTCCAGCTCACCATCAAAG
CGTTCGGATACTCGTGCCATCATGGCCTTGACGCTCTCGGGGTCCATTAC
GTCGCACGCCAAGCTATATTGCTCCGGCCCCTGCGCCTTGGCTTCGGGCC
AAGAGGACGCCAGGAGCTTGGCTATTGAAGGCTGGAATCGAGGAAGGGAG
CTCACCAGGACTTGAGCCCCTGCCGCTCGCCATGCTTGAGCGCATCCCCA
CGCCAGGGATCTGTGGTTGGCCAGGCCTACCACCAGACACCGCTTGCCCG
CCAGCATTACGTTACTGGTGATGGAGAGAGTGAAGTGCAAGGATGATTGG
TGGAGAGATTAACCTTGCTATTGCGACTACCAGCCGCAGGGGGGGGCTGC
TGGTGGTGGTTCTCCCGTTGCTGGTGCTGCCTGCAGCTGCCTGTGCCAGT
GGTTTGTGTATTTAAGGGTAGGCAGCGAGTAGCAAGACGGGGTTGAAGCA
TGGCGCGGCGGCTTTCTTCTTTCTCCCTGTTCTGCGCGTCACCAAAGTCT
CACTATGGTCAACCATTTACACACCCACCCTACCTACCGTATCACTTTAT
GCAATAGAGCTACATGTACCGTCACGTCGGTCGACGTTTTGCAGCTTCCA
CCTTTATCTCTTCCTCGTCTCGGACCGCTGACGCCCGCACTTGCCTCCCC
CACTCCCCCTCCCTCCCCCGTCTTCCCATGCTCCTCGCGGCCGCCGCTGC
CTCGGCCACCATGCACACTACGCGACTTCCTTCCCCGCGTGCACGGGAGA
TGACCACAAATAGCTCGGCCACAGCCCATGCCGCGCACAAGGCCCACGCC
GCCTCGGCCGAGAGTGCGAGCGAGTTTCTGGACGACCCAGACCTGCTTCG
AGACCAAGCCTACGTGAATGGGCAATGGGTGGGCAGCGCCACGGGTGCGA
ACACGTACGAAGTCAAAGACCCGGCTACACACGTTGTCATTGCCAAAGTC
CCCTCCATGGGGGCGGCCGACACGCGGGTTGCCATCGACGCGGCCGCCGC
GGCCTGGAACGGGTGGCGACACAAGACAGGCAAAGAACGAGGAGATGTGC
TCCGACGGTGGCATGATCTGATGCAGCTCCACATGACAGACCTGGCCAAA
ATTCTAACATTAGAAAATGGAAAGCCCTTAGCGGAATCTCGGGGCGAGAT
TGGGTATGCGGCGAGTTTTGTCGAGTTTTATGCCGAGGAAGCCAAGCGGA
CATATGGTGAAATGATCCCTTCCCCTACCCCTGGTCGACGGCTCGTAACC
GTCAAGCAACCGGTCGGTGTGGCCGCCCTCATTTCCCCCTGGAACTTTCC
CAGTGCCATGATCACACGCAAGGCCGCCCCTGCCCTCGCGGCGGGCTGTC
CGGTGGTCATTAAGCCTGCTGAGGACACGCCTTTATCTGCCTTGGCCTTG
GCAGAGCTCGCTGAACGTGCCGGCGTCCCTCCAGGGGTCCTGAACGTGGT
CACCTGCCCGAGAAAGCATGCAGCAGACGTGGGGCTTGAATTAAGCACCA
ACAGGGTCGTGCGTAAGGTGTCCTTCACGGGTTCCACGGCGGTGGGAAAG
ATCTTGATGAGGGACTGCGCGTCGACCGTGAAGAAGCTTTCGCTTGAATT
GGGGGGGAATGCCCCGTTGCTTGTGTTTGATGATGCGAACCTCGAACACG
CCTTGAATGGTGTGATAGTAGCCAAGTTCCGCAATGCGGGCCAGACGTGC
GTGTCTCCCAACCGACTGTTGGTCCAGGCGGGGATTTATGAGGAGTTCGT
CACGCGCCTGGCGGAGCGGGTGTCGGAATTGCACGTTGGGCATGGGCTGC
AGCCGGGTGCACAGGTAAGGAGGCCATGATCTTCGAGGATTATTGGTTTC
CGGGTCACCACCTTGTTCCCCCCTCCATTTTCTTCATTCTTTTCACGGGC
GATTTTTGGGGTCCCTGGTTAACGTCCTTCCTCTGTTTCTTTCCATCCGT
TGCTTGCCGTCACCGCGCTAGCTGCTAGATCAACTTCAAGTCCCCTCCCT
CCCTCCCTCACTTCCTCCCTCCCCTCCTCCCCTCCTCCTCTCCTCCCCTC
AGGTCGGCCCCTTGATCAACCACGCGGCGCTTCAAAAGGTTCAAGATCAC
GTGAGCGACGCGGTGCAAAAAGGCGCAAAACTTCTGACTGGGGGAGAGGT
CCACGCGTTGGGAGGCACGTTTTTTGAGCCCACGGTATTGACAAATTGTA
AGGATGATATGTCGGTGTTTAAAGAAGAGACCTTTGGCCCTGTCTGTTCT
GTGTTCCGTTTTGAGAGTGAGGAGGAGGGGGTCAGGATGGCCAACAGCAC
GGAATTTGGCTTAGCCGCCTATGTGTTTACAGGGGAGATGGGTAAAGGGT
GGAGGGTGGCAGAGGGGATCGAGGCGGGTATGGTCGGAGTGAATGAGGGC
ATGATCTCGACGGCGGTGGCGCCGTTTGGAGGGGTGAAAGAAAGCGGGCT
GGGGAGGGAGGGAGCGAGGGGCGGGATTGACGAGTATATGGAGACGAAGT
ATCTGTGTCTGGGCGGGATTGGATAG back to topCoding sequence (CDS) from alignment at scaffold_18:539043..542168- >mRNA_6719 ID=mRNA_6719|Name=jgi.p|Nanoce1779_2|672574|organism=Nannochloropsis oceanica|type=CDS|length=3450bp|location=Sequence derived from alignment at scaffold_18:539043..542168- (Nannochloropsis oceanica)
GTCGGCCCCTTGATCAACCACGCGGCGCTTCAAAAGGTTCAAGATCACGT
GAGCGACGCGGTGCAAAAAGGCGCAAAACTTCTGACTGGGGGAGAGGTCC
ACGCGTTGGGAGGCACGTTTTTTGAGCCCACGGTATTGACAAATTGTAAG
GATGATATGTCGGTGTTTAAAGAAGAGACCTTTGGCCCTGTCTGTTCTGT
GTTCCGTTTTGAGAGTGAGGAGGAGGGGGTCAGGATGGCCAACAGCACGG
AATTTGGCTTAGCCGCCTATGTGTTTACAGGGGAGATGGGTAAAGGGTGG
AGGGTGGCAGAGGGGATCGAGGCGGGTATGGTCGGAGTGAATGAGGGCAT
GATCTCGACGGCGGTGGCGCCGTTTGGAGGGGTGAAAGAAAGCGGGCTGG
GGAGGGAGGGAGCGAGGGGCGGGATTGACGAGTATATGGAGACGAAGTAT
CTGTGTCTGGGCGGGATTGGATAGATGTACCGTCACGTCGGTCGACGTTT
TGCAGCTTCCACCTTTATCTCTTCCTCGTCTCGGACCGCTGACGCCCGCA
CTTGCCTCCCCCACTCCCCCTCCCTCCCCCGTCTTCCCATGCTCCTCGCG
GCCGCCGCTGCCTCGGCCACCATGCACACTACGCGACTTCCTTCCCCGCG
TGCACGGGAGATGACCACAAATAGCTCGGCCACAGCCCATGCCGCGCACA
AGGCCCACGCCGCCTCGGCCGAGAGTGCGAGCGAGTTTCTGGACGACCCA
GACCTGCTTCGAGACCAAGCCTACGTGAATGGGCAATGGGTGGGCAGCGC
CACGGGTGCGAACACGTACGAAGTCAAAGACCCGGCTACACACGTTGTCA
TTGCCAAAGTCCCCTCCATGGGGGCGGCCGACACGCGGGTTGCCATCGAC
GCGGCCGCCGCGGCCTGGAACGGGTGGCGACACAAGACAGGCAAAGAACG
AGGAGATGTGCTCCGACGGTGGCATGATCTGATGCAGCTCCACATGACAG
ACCTGGCCAAAATTCTAACATTAGAAAATGGAAAGCCCTTAGCGGAATCT
CGGGGCGAGATTGGGTATGCGGCGAGTTTTGTCGAGTTTTATGCCGAGGA
AGCCAAGCGGACATATGGTGAAATGATCCCTTCCCCTACCCCTGGTCGAC
GGCTCGTAACCGTCAAGCAACCGGTCGGTGTGGCCGCCCTCATTTCCCCC
TGGAACTTTCCCAGTGCCATGATCACACGCAAGGCCGCCCCTGCCCTCGC
GGCGGGCTGTCCGGTGGTCATTAAGCCTGCTGAGGACACGCCTTTATCTG
CCTTGGCCTTGGCAGAGCTCGCTGAACGTGCCGGCGTCCCTCCAGGGGTC
CTGAACGTGGTCACCTGCCCGAGAAAGCATGCAGCAGACGTGGGGCTTGA
ATTAAGCACCAACAGGGTCGTGCGTAAGGTGTCCTTCACGGGTTCCACGG
CGGTGGGAAAGATCTTGATGAGGGACTGCGCGTCGACCGTGAAGAAGCTT
TCGCTTGAATTGGGGGGGAATGCCCCGTTGCTTGTGTTTGATGATGCGAA
CCTCGAACACGCCTTGAATGGTGTGATAGTAGCCAAGTTCCGCAATGCGG
GCCAGACGTGCGTGTCTCCCAACCGACTGTTGGTCCAGGCGGGGATTTAT
GAGGAGTTCGTCACGCGCCTGGCGGAGCGGGTGTCGGAATTGCACGTTGG
GCATGGGCTGCAGCCGGGTGCACAGGTCGGCCCCTTGATCAACCACGCGG
CGCTTCAAAAGGTTCAAGATCACGTGAGCGACGCGGTGCAAAAAGGCGCA
AAACTTCTGACTGGGGGAGAGGTCCACGCGTTGGGAGGCACGTTTTTTGA
GCCCACGGTATTGACAAATTGTAAGGATGATATGTCGGTGTTTAAAGAAG
AGACCTTTGGCCCTGTCTGTTCTGTGTTCCGTTTTGAGAGTGAGGAGGAG
GGGGTCAGGATGGCCAACAGCACGGAATTTGGCTTAGCCGCCTATGTGTT
TACAGGGGAGATGGGTAAAGGGTGGAGGGTGGCAGAGGGGATCGAGGCGG
GTATGGTCGGAGTGAATGAGGGCATGATCTCGACGGCGGTGGCGCCGTTT
GGAGGGGTGAAAGAAAGCGGGCTGGGGAGGGAGGGAGCGAGGGGCGGGAT
TGACGAGTATATGGAGACGAAGTATCTGTGTCTGGGCGGGATTGGATAGA
TGTACCGTCACGTCGGTCGACGTTTTGCAGCTTCCACCTTTATCTCTTCC
TCGTCTCGGACCGCTGACGCCCGCACTTGCCTCCCCCACTCCCCCTCCCT
CCCCCGTCTTCCCATGCTCCTCGCGGCCGCCGCTGCCTCGGCCACCATGC
ACACTACGCGACTTCCTTCCCCGCGTGCACGGGAGATGACCACAAATAGC
TCGGCCACAGCCCATGCCGCGCACAAGGCCCACGCCGCCTCGGCCGAGAG
TGCGAGCGAGTTTCTGGACGACCCAGACCTGCTTCGAGACCAAGCCTACG
TGAATGGGCAATGGGTGGGCAGCGCCACGGGTGCGAACACGTACGAAGTC
AAAGACCCGGCTACACACGTTGTCATTGCCAAAGTCCCCTCCATGGGGGC
GGCCGACACGCGGGTTGCCATCGACGCGGCCGCCGCGGCCTGGAACGGGT
GGCGACACAAGACAGGCAAAGAACGAGGAGATGTGCTCCGACGGTGGCAT
GATCTGATGCAGCTCCACATGACAGACCTGGCCAAAATTCTAACATTAGA
AAATGGAAAGCCCTTAGCGGAATCTCGGGGCGAGATTGGGTATGCGGCGA
GTTTTGTCGAGTTTTATGCCGAGGAAGCCAAGCGGACATATGGTGAAATG
ATCCCTTCCCCTACCCCTGGTCGACGGCTCGTAACCGTCAAGCAACCGGT
CGGTGTGGCCGCCCTCATTTCCCCCTGGAACTTTCCCAGTGCCATGATCA
CACGCAAGGCCGCCCCTGCCCTCGCGGCGGGCTGTCCGGTGGTCATTAAG
CCTGCTGAGGACACGCCTTTATCTGCCTTGGCCTTGGCAGAGCTCGCTGA
ACGTGCCGGCGTCCCTCCAGGGGTCCTGAACGTGGTCACCTGCCCGAGAA
AGCATGCAGCAGACGTGGGGCTTGAATTAAGCACCAACAGGGTCGTGCGT
AAGGTGTCCTTCACGGGTTCCACGGCGGTGGGAAAGATCTTGATGAGGGA
CTGCGCGTCGACCGTGAAGAAGCTTTCGCTTGAATTGGGGGGGAATGCCC
CGTTGCTTGTGTTTGATGATGCGAACCTCGAACACGCCTTGAATGGTGTG
ATAGTAGCCAAGTTCCGCAATGCGGGCCAGACGTGCGTGTCTCCCAACCG
ACTGTTGGTCCAGGCGGGGATTTATGAGGAGTTCGTCACGCGCCTGGCGG
AGCGGGTGTCGGAATTGCACGTTGGGCATGGGCTGCAGCCGGGTGCACAG back to top
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